Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002853

Physical Location & Seq

Genomic Coordinates Forward (+)

25602911 .. 25605059

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGGCTTCTCTGTTGCACCTCCTCTTCTTCCTCTTCCTTCAACCTCTCTTCTCCATTGCCAATGTCCACAAACTCAACCAACTCAGATCAGAGCTCATCTCCCAACCAACACCTCTAAATGACACCCCACCAACCCTTTACTTTGAAGTAACCAAACCCATTAAACTACCCAAAACCAAGCCTTGTTCCCAGCTCATTCTCCAGCATGACTTTGCCTACACTTATGGAAAAGCCCCAGTCTTTGCTAACTACCACCCTCCCTCAAATTGCCCATCTCAGAATTTCTCCAAGATTGTTCTTGAATGGAAAGCTACTAGTAAAGGAAGGCAATTTGACCGCATTTTTGGGGTTTGGCTTTCTGGGGTTGAGCTTCTCAGGAGCTGCTCCGCAGAGCCGAGGCCTAATGGGATTGTTTGGAGGGTTGAGAAGGACATCACCAGGTACTATTCATTACTCCAGAAGAATCAGACACTTGCTGTTTATCTTGGCAATTTGATTGATAAAACCTATACTGGGGTTTACCATGTCAATGTTAGTATTCATTTTTATCCTGCTGAAGAGAACTTGATTGATCATGACCAAAAGTTGGCATCTTGGGCGGATTTGATTCTGCCCATTTCTAGAAATTTGCCTTTGAAGGATGGGTTGTGGTTTGAAATTGAGAATTCAACTGATACCAAGTTGAAGGAATTTGAGATTCCTCGAAATGCTTATAGGGCTGTGTTGGAAGTGTATGTTTCCTTTCATGAGAATGATGAATCCTGGTATGCAAATCCTACTAATGAGTACATTGCTGCAAACAACCTTAGCGTGCCCGGAAATGGACCCTTTAGGGAGGTTGTGGTCAGTATAGATGGTCATGTTGTTGGTGCTGTGTGGCCTTTTACAGTGATATTCACAGGAGGGGTCAATCCTCTCCTGTGGCGACCCATTACTGCAATTGGCTCATACGATCTTCCTTCTTATGACATCGAAATCACACCGTTGTTAGGGAACATATTGGATGGGAAGAGCCACAAGATTGGGTTTAATGTTACAAATGCCTTGAATGTTTGGTACATAGATGCAAATTTGCATATTTGGTTGGACAAACAGAGCAGAAGAACTGAGGGACAGCTTGTGAAGCACACAAGCTTGCCCCTTGTTATTTCACTGGTGTCAGATTTCAAGGGTTTAAATGGCACATTTATCACAAGGGTGAGCAGGTCTGTCTCATCAACTGGGTGGGTGAAGTCATCGAATGGGAATATTACAACCCAGTCAATTCAAAATTTTACTACAATAGTGAACCAGAACATCCATTTCAATGACACTGTTCATATCATGCCGCCTTCCTCCATCGTTCACTCACTCTCTTCACACAAAACATTTCCCCTTTACTTGTACACTGACTACTTGGAACAAAAAAATAATACATATTTATTGGTGACAAATGTCAGTCTGGGAGTTATTGAGAAGAAAACTGCAAGTGCTGGTTCTCGATTCATGAAGAGCTCTCTCAGAAATTTGCAGAATGCAGAGGGTCATATGGTTGTAAAAGATAATTTGGTAGTCAGTGGAGTCGGGAATACACAGCAAATGTACAGATATCATGGTGGAAAATTCTGTTACTTTAGGAATATAAGCAGCTCAAACTACACCATACTTTATGATAAGGTTGAGAATACATGCAACAACAAACCTAAGTCTAACTGGGATTTTGGTTTGAGAAGACTGTGGCCTTTTGGTGCTGGATTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNGaseA

Protein Analysis

580

Amino Acids

65.78

Weight (kDa)

8.94

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNGaseA	PF12222	59 - 376	1.8e-103	Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
PNGase_A_C	PF25156	395 - 459	3.8e-06	PNGase_A C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14920
fragaria_vesca	FvH4_3g18311 FvH4_3g18320 FvH4_3g18320
malus_domestica	MD03G1242900.v1.1 MD03G1243300.v1.1 MD03G1243400.v1.1
prunus_persica	Prupe.4G164900_v2.0.a1
pyrus_communis	pycom11g23210
rosa_chinensis	RchiOBHm_Chr5g0030951 RchiOBHm_Chr5g0030961 RchiOBHm_Chr5g0030971
rosa_laevigata	RLG00000033274 RLG00000033275 RLG00000033276
rosa_multiflora	Rmu_sc0001974.1_g000004 Rmu_sc0001974.1_g000008 Rmu_sc0001974.1_g000009 Rmu_sc0040817.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049310 Rroxscaffold_1G00049320
rosa_rugosa	Rorug05G0121600 Rorug05G0121700 Rorug05G0121900
rosa_samantha	Rh5AG214900 Rh5AG215000 Rh5AG215200 Rh5BG213900 Rh5BG214000 Rh5BG214200 Rh5CG237800 Rh5CG237900 Rh5CG238100 Rh5DG218500 Rh5DG218600 Rh5DG218800
rosa_wichuraiana	Rw5G019660 Rw5G019670 Rw5G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1194
AccB7I	CCANNNNNTGG	1 cut(s)	586
AciI	CCGC	4 cut(s)	337, 387, 599, 1328
AcsI	RAATTY	8 cut(s)	280, 625, 664, 689, 1069, 1270, 1504, 1601
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	5 cut(s)	443, 788, 1058, 1385, 1583
AfiI	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	437, 761
AleI	CACNNNNGTG	1 cut(s)	1196
AluBI	AGCT	9 cut(s)	94, 193, 311, 370, 381, 1117, 1134, 1494, 1629
AluI	AGCT	9 cut(s)	94, 193, 311, 370, 381, 1117, 1134, 1494, 1629
Alw21I	GWGCWC	2 cut(s)	96, 1496
Alw26I	GTCTC	1 cut(s)	1216
AlwNI	CAGNNNCTG	1 cut(s)	381
AoxI	GGCC	3 cut(s)	398, 878, 1718
ApeKI	GCWGC	3 cut(s)	381, 794, 1626
ApoI	RAATTY	8 cut(s)	280, 625, 664, 689, 1069, 1270, 1504, 1601
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	4 cut(s)	427, 1210, 1240, 1438
AvaII	GGWCC	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	816
BanII	GRGCYC	2 cut(s)	96, 1496
BbsI	GAAGAC	1 cut(s)	1717
Bbv12I	GWGCWC	2 cut(s)	96, 1496
BbvI	GCAGC	3 cut(s)	368, 781, 1638
BccI	CCATC	5 cut(s)	280, 635, 848, 998, 1346
BciT130I	CCWGG	2 cut(s)	439, 763
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	816
BcoDI	GTCTC	1 cut(s)	1216
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	2 cut(s)	315, 621
BfuAI	ACCTGC	1 cut(s)	1194
BisI	GCNGC	4 cut(s)	382, 795, 1328, 1627
BlsI	GCNGC	4 cut(s)	383, 796, 1329, 1628
Bme1390I	CCNGG	3 cut(s)	439, 763, 816
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	3 cut(s)	439, 763, 816
BmrI	ACTGGG	5 cut(s)	230, 522, 1230, 1252, 1702
BmsI	GCATC	2 cut(s)	599, 1054
BmuI	ACTGGG	5 cut(s)	230, 522, 1230, 1252, 1702
BoxI	GACNNNNGTC	1 cut(s)	1433
BpiI	GAAGAC	1 cut(s)	1717
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	185, 440
Bpu10I	CCTNAGC	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	816
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
Bse1I	ACTGG	6 cut(s)	236, 517, 1158, 1225, 1258, 1697
Bse3DI	GCAATG	2 cut(s)	54, 789
BseBI	CCWGG	2 cut(s)	439, 763
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	646, 1009, 1296
BseLI	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
BseMI	GCAATG	2 cut(s)	54, 789
BseMII	CTCAG	5 cut(s)	97, 290, 388, 1098, 1513
BseNI	ACTGG	6 cut(s)	236, 517, 1158, 1225, 1258, 1697
BseRI	GAGGAG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	3 cut(s)	368, 781, 1638
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	3 cut(s)	400, 880, 1720
BsiHKAI	GWGCWC	2 cut(s)	96, 1496
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	1125
BslI	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
BsmAI	GTCTC	1 cut(s)	1216
BsmFI	GGGAC	1 cut(s)	1125
BsmI	GAATGC	1 cut(s)	1519
BsnI	GGCC	3 cut(s)	400, 880, 1720
Bsp1286I	GDGCHC	3 cut(s)	96, 816, 1496
Bsp1407I	TGTACA	2 cut(s)	1383, 1581
Bsp143I	GATC	3 cut(s)	86, 571, 952
BspACI	CCGC	4 cut(s)	337, 387, 599, 1328
BspANI	GGCC	3 cut(s)	400, 880, 1720
BspCNI	CTCAG	5 cut(s)	96, 289, 387, 1099, 1512
BspHI	TCATGA	3 cut(s)	574, 745, 1485
BspLI	GGNNCC	1 cut(s)	826
BspMI	ACCTGC	1 cut(s)	1194
BspQI	GCTCTTC	2 cut(s)	1004, 1484
BsrDI	GCAATG	2 cut(s)	54, 789
BsrGI	TGTACA	2 cut(s)	1383, 1581
BsrI	ACTGG	6 cut(s)	236, 517, 1158, 1225, 1258, 1697
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	3 cut(s)	86, 571, 952
Bst2UI	CCWGG	2 cut(s)	439, 763
Bst4CI	ACNGT	4 cut(s)	889, 984, 1315, 1716
Bst6I	CTCTTC	7 cut(s)	29, 38, 53, 552, 1004, 1360, 1484
BstAUI	TGTACA	2 cut(s)	1383, 1581
BstC8I	GCNNGC	2 cut(s)	812, 1136
BstDEI	CTNAG	7 cut(s)	83, 276, 374, 806, 1107, 1499, 1683
BstF5I	GGATG	3 cut(s)	646, 1009, 1296
BstKTI	GATC	3 cut(s)	89, 574, 955
BstMAI	GTCTC	1 cut(s)	1216
BstMBI	GATC	3 cut(s)	86, 571, 952
BstMWI	GCNNNNNNNGC	3 cut(s)	596, 716, 1123
BstNI	CCWGG	2 cut(s)	439, 763
BstNSI	RCATGY	1 cut(s)	1671
BstPAI	GACNNNNGTC	1 cut(s)	1433
BstSCI	CCNGG	3 cut(s)	437, 761, 814
BstSLI	GKGCMC	1 cut(s)	816
BstV1I	GCAGC	3 cut(s)	368, 781, 1638
BstV2I	GAAGAC	1 cut(s)	1717
BstXI	CCANNNNNNTGG	1 cut(s)	1022
BsuRI	GGCC	3 cut(s)	400, 880, 1720
BtsCI	GGATG	3 cut(s)	646, 1009, 1296
BtsIMutI	CAGTG	5 cut(s)	894, 1151, 1311, 1386, 1561
BveI	ACCTGC	1 cut(s)	1194
Cac8I	GCNNGC	2 cut(s)	812, 1136
CaiI	CAGNNNCTG	1 cut(s)	381
CciI	TCATGA	3 cut(s)	574, 745, 1485
Cfr13I	GGNCC	1 cut(s)	824
CsiI	ACCWGGT	1 cut(s)	437
Csp6I	GTAC	5 cut(s)	442, 787, 1057, 1384, 1582
CviAII	CATG	9 cut(s)	206, 524, 575, 746, 860, 1324, 1486, 1592, 1668
CviQI	GTAC	5 cut(s)	442, 787, 1057, 1384, 1582
DdeI	CTNAG	7 cut(s)	83, 276, 374, 806, 1107, 1499, 1683
DpnI	GATC	3 cut(s)	88, 573, 954
DpnII	GATC	3 cut(s)	86, 571, 952
DraI	TTTAAA	1 cut(s)	1176
Eam1104I	CTCTTC	7 cut(s)	29, 38, 53, 552, 1004, 1360, 1484
EarI	CTCTTC	7 cut(s)	29, 38, 53, 552, 1004, 1360, 1484
EciI	GGCGGA	1 cut(s)	614
Ecl136II	GAGCTC	2 cut(s)	94, 1494
Eco147I	AGGCCT	1 cut(s)	400
Eco24I	GRGCYC	2 cut(s)	96, 1496
Eco32I	GATATC	1 cut(s)	1589
Eco47I	GGWCC	1 cut(s)	824
Eco53kI	GAGCTC	2 cut(s)	94, 1494
Eco57I	CTGAAG	1 cut(s)	576
EcoICRI	GAGCTC	2 cut(s)	94, 1494
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	437, 761
EcoRV	GATATC	1 cut(s)	1589
EcoT38I	GRGCYC	2 cut(s)	96, 1496
FaeI	CATG	9 cut(s)	209, 527, 578, 749, 863, 1327, 1489, 1595, 1671
FaqI	GGGAC	1 cut(s)	1125
FatI	CATG	9 cut(s)	205, 523, 574, 745, 859, 1323, 1485, 1591, 1667
FauNDI	CATATG	1 cut(s)	1527
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	4 cut(s)	382, 795, 1328, 1627
FokI	GGATG	3 cut(s)	653, 1016, 1283
FriOI	GRGCYC	2 cut(s)	96, 1496
Fsp4HI	GCNGC	4 cut(s)	382, 795, 1328, 1627
FspBI	CTAG	2 cut(s)	315, 621
GluI	GCNGC	4 cut(s)	382, 795, 1328, 1627
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	2 cut(s)	185, 440
HaeIII	GGCC	3 cut(s)	400, 880, 1720
HapII	CCGG	1 cut(s)	816
Hin1II	CATG	9 cut(s)	209, 527, 578, 749, 863, 1327, 1489, 1595, 1671
HindIII	AAGCTT	1 cut(s)	1132
HinfI	GANTC	6 cut(s)	463, 607, 697, 758, 1482, 1560
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	4 cut(s)	427, 1210, 1240, 1438
Hpy166II	GTNNAC	5 cut(s)	67, 520, 1288, 1345, 1386
Hpy188I	TCNGA	6 cut(s)	86, 91, 279, 468, 1162, 1502
Hpy188III	TCNNGA	9 cut(s)	299, 376, 457, 575, 621, 746, 1479, 1486, 1564
Hpy8I	GTNNAC	5 cut(s)	67, 520, 1288, 1345, 1386
HpyAV	CCTTC	7 cut(s)	47, 318, 421, 631, 679, 969, 1341
HpyCH4III	ACNGT	4 cut(s)	889, 984, 1315, 1716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	596, 716, 1123
HpyF3I	CTNAG	7 cut(s)	83, 276, 374, 806, 1107, 1499, 1683
Hsp92II	CATG	9 cut(s)	209, 527, 578, 749, 863, 1327, 1489, 1595, 1671
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	86, 571, 952
LguI	GCTCTTC	2 cut(s)	1004, 1484
LmnI	GCTCC	2 cut(s)	378, 389
Lsp1109I	GCAGC	3 cut(s)	368, 781, 1638
LweI	GCATC	2 cut(s)	599, 1054
MabI	ACCWGGT	1 cut(s)	437
MaeI	CTAG	2 cut(s)	315, 621
MaeIII	GTNAC	4 cut(s)	148, 1033, 1426, 1607
MalI	GATC	3 cut(s)	88, 573, 954
MboI	GATC	3 cut(s)	86, 571, 952
MfeI	CAATTG	1 cut(s)	939
MhlI	GDGCHC	3 cut(s)	96, 816, 1496
MlyI	GAGTC	1 cut(s)	1569
MmeI	TCCRAC	2 cut(s)	705, 1065
MseI	TTAA	3 cut(s)	162, 1029, 1175
MslI	CAYNNNNRTG	4 cut(s)	528, 750, 1196, 1305
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	3 cut(s)	439, 763, 816
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	1519
MvaI	CCWGG	2 cut(s)	439, 763
MwoI	GCNNNNNNNGC	3 cut(s)	596, 716, 1123
NciI	CCSGG	1 cut(s)	816
NdeI	CATATG	1 cut(s)	1527
NdeII	GATC	3 cut(s)	86, 571, 952
NlaIII	CATG	9 cut(s)	209, 527, 578, 749, 863, 1327, 1489, 1595, 1671
NlaIV	GGNNCC	1 cut(s)	826
NmeAIII	GCCGAG	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	1426
NspI	RCATGY	1 cut(s)	1671
OliI	CACNNNNGTG	1 cut(s)	1196
PagI	TCATGA	3 cut(s)	574, 745, 1485
PceI	AGGCCT	1 cut(s)	400
PciSI	GCTCTTC	2 cut(s)	1004, 1484
PctI	GAATGC	1 cut(s)	1519
PfeI	GAWTC	5 cut(s)	463, 607, 697, 758, 1482
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	4 cut(s)	383, 796, 1329, 1628
PleI	GAGTC	1 cut(s)	1568
PpsI	GAGTC	1 cut(s)	1568
PshAI	GACNNNNGTC	1 cut(s)	1433
Psp124BI	GAGCTC	2 cut(s)	96, 1496
Psp6I	CCWGG	2 cut(s)	437, 761
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	437, 761
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	824
PstNI	CAGNNNCTG	1 cut(s)	381
RsaI	GTAC	5 cut(s)	443, 788, 1058, 1385, 1583
RsaNI	GTAC	5 cut(s)	442, 787, 1057, 1384, 1582
RseI	CAYNNNNRTG	4 cut(s)	528, 750, 1196, 1305
SacI	GAGCTC	2 cut(s)	96, 1496
SapI	GCTCTTC	2 cut(s)	1004, 1484
SaqAI	TTAA	3 cut(s)	162, 1029, 1175
SatI	GCNGC	4 cut(s)	382, 795, 1328, 1627
Sau3AI	GATC	3 cut(s)	86, 571, 952
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	1 cut(s)	1569
ScrFI	CCNGG	3 cut(s)	439, 763, 816
SduI	GDGCHC	3 cut(s)	96, 816, 1496
SexAI	ACCWGGT	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	599, 1054
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	4 cut(s)	528, 750, 1196, 1305
SpeI	ACTAGT	1 cut(s)	314
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	4 cut(s)	337, 387, 599, 1328
SspI	AATATT	1 cut(s)	1249
SspMI	CTAG	2 cut(s)	315, 621
SstI	GAGCTC	2 cut(s)	96, 1496
StuI	AGGCCT	1 cut(s)	400
StyD4I	CCNGG	3 cut(s)	437, 761, 814
TaaI	ACNGT	4 cut(s)	889, 984, 1315, 1716
TaqI	TCGA	4 cut(s)	703, 972, 1238, 1480
TatI	WGTACW	3 cut(s)	786, 1383, 1581
TauI	GCSGC	1 cut(s)	1330
TfiI	GAWTC	5 cut(s)	463, 607, 697, 758, 1482
Tru1I	TTAA	3 cut(s)	162, 1029, 1175
Tru9I	TTAA	3 cut(s)	162, 1029, 1175
TscAI	CASTG	5 cut(s)	894, 1158, 1318, 1393, 1561
TseFI	GTSAC	1 cut(s)	1426
TseI	GCWGC	3 cut(s)	381, 794, 1626
Tsp45I	GTSAC	1 cut(s)	1426
TspDTI	ATGAA	7 cut(s)	438, 530, 734, 771, 1307, 1474, 1502
TspRI	CASTG	5 cut(s)	894, 1158, 1318, 1393, 1561
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	8 cut(s)	280, 625, 664, 689, 1069, 1270, 1504, 1601
XbaI	TCTAGA	1 cut(s)	620
XceI	RCATGY	1 cut(s)	1671
XspI	CTAG	2 cut(s)	315, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.