Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040817.1

Orthogroup ID

OG0002853

Physical Location & Seq

Genomic Coordinates Forward (+)

2727 .. 4508

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040817.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

atggcttctctgttgcatctcctcttcttcctcttccttcaacctctcttctccattgccaatgtccacaaactcaaccaactcagatcagagctcatctcccaaccaacacctctaaatgacaccccaccaaccctctactttgaagtaaccaaacccattaaactacccaaaaccaagccttgttcccagctcattctccagcatgactttgcctacacttatggaaaagccccagtctttgctaactaccaccctccctcaaattgcccatctcagaatttctccaagattgttcttgaatggaaagctactagtaaaggaaggcaatttgaccgcatttttggggtttggctttctggggttgagcttctcaggagctgcaccgcagagccgaggcctaatgggattgtttggagggttgagaaggacatcaccaggtactattcattactccagaagaatcagacacttgctgtttatcttggcaatttgattgataaaacctatactggggtttaccatgtcaatgttagtattcatttttatcctgctgaagagaacttgattcatcatgaccaaaagttggcatcttgggcggatttgattctgcccatttctagaaatttgcctttgaaggatgggttgtggtttgaaattgagaattcaactgataccaagttgaaggaatttgagattcctcgaaatgcttatagggctgtgttggaagtgtatgtttcctttcatgagaatgatgaatcctggtatgcaaatcctactaatgagtacattgctgcaaacaaccttagcgtgcccggaaatggaccctttagggaggttgtggtcagtatagatggtcatgttgttggtgctgtgtggccttttacagtgatattcacaggaggggtcaatcctctcctgtggcgacccattactgcagttggctcatacgatcttccttcttatgacattgaaatcacaccgtttttagggaacatattggatgggaagagccacaagattgggtttaatgtgacaaatgccttgaatgtttggtacatagatgcaaatttgcatatttggttggacaaacagagcagaagaactgagggacagcttgtgaagcacacaagcttgccccttgttatttcactggtgtcagatttcaagggtttaaatggcacatttatcacaagggtgagcaggtctgtctcatcaactgggtgggtgaagtcatcgaatgggaatattacaacccagtcaattcaaaaattttactacagtaatacaatggtcatggggaataatggtgatgtgcagatagtgaaccagaacatccatttcaatgacactgttcatatcatgccgccttcctccatcgttcactcactctcttcacacaaaacatttcccctttacttgtacactgactacttggaacaaaaaaataatacatatttattggtgacaaatgtcagtctgggagttattgagaagaaaactgcaagtgctggttctcgattcatgaaaagctctctcagaaatttgcagaatgcagagggtcatatggttgtaaaagataatttggtagtcagtggagtcgggaatacacagcaaatgtacagatatcatggtggaaaattctgttactttaggaatataagcagctcaaactacaccatactttatgacaaggttgagaatacatgcaacaacaaacctaagtctaactgggattttggtttgagaagactgtggccttttggtgctggatttatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNGaseA

Protein Analysis

593

Amino Acids

67.32

Weight (kDa)

9.0

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14920
fragaria_vesca	FvH4_3g18311 FvH4_3g18320 FvH4_3g18320
malus_domestica	MD03G1242900.v1.1 MD03G1243300.v1.1 MD03G1243400.v1.1
prunus_persica	Prupe.4G164900_v2.0.a1
pyrus_communis	pycom11g23210
rosa_chinensis	RchiOBHm_Chr5g0030951 RchiOBHm_Chr5g0030961 RchiOBHm_Chr5g0030971
rosa_laevigata	RLG00000033274 RLG00000033275 RLG00000033276
rosa_multiflora	Rmu_sc0001974.1_g000004 Rmu_sc0001974.1_g000008 Rmu_sc0001974.1_g000009 Rmu_sc0040817.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049310 Rroxscaffold_1G00049320
rosa_rugosa	Rorug05G0121600 Rorug05G0121700 Rorug05G0121900
rosa_samantha	Rh5AG214900 Rh5AG215000 Rh5AG215200 Rh5BG213900 Rh5BG214000 Rh5BG214200 Rh5CG237800 Rh5CG237900 Rh5CG238100 Rh5DG218500 Rh5DG218600 Rh5DG218800
rosa_wichuraiana	Rw5G019660 Rw5G019670 Rw5G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1194
AccB7I	CCANNNNNTGG	1 cut(s)	586
AciI	CCGC	4 cut(s)	337, 387, 599, 1367
AcsI	RAATTY	8 cut(s)	280, 625, 664, 689, 1069, 1271, 1543, 1640
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	5 cut(s)	443, 788, 1058, 1424, 1622
AfiI	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	437, 761
AleI	CACNNNNGTG	1 cut(s)	1196
AluBI	AGCT	9 cut(s)	94, 193, 311, 370, 381, 1117, 1134, 1533, 1668
AluI	AGCT	9 cut(s)	94, 193, 311, 370, 381, 1117, 1134, 1533, 1668
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	1216
AlwNI	CAGNNNCTG	1 cut(s)	381
AoxI	GGCC	3 cut(s)	398, 878, 1757
ApeKI	GCWGC	3 cut(s)	381, 794, 1665
ApoI	RAATTY	8 cut(s)	280, 625, 664, 689, 1069, 1271, 1543, 1640
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	5 cut(s)	427, 1210, 1240, 1322, 1477
AvaII	GGWCC	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	1756
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	368, 781, 1677
BccI	CCATC	5 cut(s)	280, 635, 848, 998, 1385
BciT130I	CCWGG	2 cut(s)	439, 763
BcnI	CCSGG	1 cut(s)	816
BcoDI	GTCTC	1 cut(s)	1216
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	2 cut(s)	315, 621
BfmI	CTRYAG	2 cut(s)	936, 1279
BfuAI	ACCTGC	1 cut(s)	1194
BisI	GCNGC	4 cut(s)	382, 795, 1367, 1666
BlsI	GCNGC	4 cut(s)	383, 796, 1368, 1667
Bme1390I	CCNGG	3 cut(s)	439, 763, 816
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	3 cut(s)	439, 763, 816
BmrI	ACTGGG	5 cut(s)	230, 522, 1230, 1252, 1741
BmsI	GCATC	3 cut(s)	25, 599, 1054
BmuI	ACTGGG	5 cut(s)	230, 522, 1230, 1252, 1741
BoxI	GACNNNNGTC	1 cut(s)	1472
BpiI	GAAGAC	1 cut(s)	1756
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	185, 440
Bpu10I	CCTNAGC	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	816
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
Bse1I	ACTGG	6 cut(s)	236, 517, 1158, 1225, 1258, 1736
Bse3DI	GCAATG	2 cut(s)	54, 789
BseBI	CCWGG	2 cut(s)	439, 763
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	646, 1009, 1335
BseLI	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
BseMI	GCAATG	2 cut(s)	54, 789
BseMII	CTCAG	5 cut(s)	97, 290, 388, 1098, 1552
BseNI	ACTGG	6 cut(s)	236, 517, 1158, 1225, 1258, 1736
BseRI	GAGGAG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	3 cut(s)	368, 781, 1677
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	2 cut(s)	367, 1337
BshFI	GGCC	3 cut(s)	400, 880, 1759
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	1125
BslI	CCNNNNNNNGG	4 cut(s)	513, 586, 821, 989
BsmAI	GTCTC	1 cut(s)	1216
BsmFI	GGGAC	1 cut(s)	1125
BsmI	GAATGC	1 cut(s)	1558
BsnI	GGCC	3 cut(s)	400, 880, 1759
Bsp1286I	GDGCHC	2 cut(s)	96, 816
Bsp1407I	TGTACA	2 cut(s)	1422, 1620
Bsp143I	GATC	2 cut(s)	86, 952
BspACI	CCGC	4 cut(s)	337, 387, 599, 1367
BspANI	GGCC	3 cut(s)	400, 880, 1759
BspCNI	CTCAG	5 cut(s)	96, 289, 387, 1099, 1551
BspHI	TCATGA	3 cut(s)	574, 745, 1524
BspLI	GGNNCC	1 cut(s)	826
BspMAI	CTGCAG	1 cut(s)	940
BspMI	ACCTGC	1 cut(s)	1194
BspQI	GCTCTTC	1 cut(s)	1004
BsrDI	GCAATG	2 cut(s)	54, 789
BsrGI	TGTACA	2 cut(s)	1422, 1620
BsrI	ACTGG	6 cut(s)	236, 517, 1158, 1225, 1258, 1736
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	2 cut(s)	86, 952
Bst2UI	CCWGG	2 cut(s)	439, 763
Bst4CI	ACNGT	5 cut(s)	889, 984, 1283, 1354, 1755
Bst6I	CTCTTC	6 cut(s)	29, 38, 53, 552, 1004, 1399
BstAUI	TGTACA	2 cut(s)	1422, 1620
BstC8I	GCNNGC	2 cut(s)	812, 1136
BstDEI	CTNAG	7 cut(s)	83, 276, 374, 806, 1107, 1538, 1722
BstF5I	GGATG	3 cut(s)	646, 1009, 1335
BstKTI	GATC	2 cut(s)	89, 955
BstMAI	GTCTC	1 cut(s)	1216
BstMBI	GATC	2 cut(s)	86, 952
BstMWI	GCNNNNNNNGC	3 cut(s)	596, 716, 1123
BstNI	CCWGG	2 cut(s)	439, 763
BstNSI	RCATGY	1 cut(s)	1710
BstPAI	GACNNNNGTC	1 cut(s)	1472
BstSCI	CCNGG	3 cut(s)	437, 761, 814
BstSFI	CTRYAG	2 cut(s)	936, 1279
BstSLI	GKGCMC	1 cut(s)	816
BstV1I	GCAGC	3 cut(s)	368, 781, 1677
BstV2I	GAAGAC	1 cut(s)	1756
BstXI	CCANNNNNNTGG	1 cut(s)	1022
BsuRI	GGCC	3 cut(s)	400, 880, 1759
BtsCI	GGATG	3 cut(s)	646, 1009, 1335
BtsIMutI	CAGTG	5 cut(s)	894, 1151, 1350, 1425, 1600
BveI	ACCTGC	1 cut(s)	1194
Cac8I	GCNNGC	2 cut(s)	812, 1136
CaiI	CAGNNNCTG	1 cut(s)	381
CciI	TCATGA	3 cut(s)	574, 745, 1524
Cfr13I	GGNCC	1 cut(s)	824
CsiI	ACCWGGT	1 cut(s)	437
Csp6I	GTAC	5 cut(s)	442, 787, 1057, 1423, 1621
CviQI	GTAC	5 cut(s)	442, 787, 1057, 1423, 1621
DdeI	CTNAG	7 cut(s)	83, 276, 374, 806, 1107, 1538, 1722
DpnI	GATC	2 cut(s)	88, 954
DpnII	GATC	2 cut(s)	86, 952
DraI	TTTAAA	1 cut(s)	1176
Eam1104I	CTCTTC	6 cut(s)	29, 38, 53, 552, 1004, 1399
EarI	CTCTTC	6 cut(s)	29, 38, 53, 552, 1004, 1399
EciI	GGCGGA	1 cut(s)	614
Ecl136II	GAGCTC	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	1628
Eco47I	GGWCC	1 cut(s)	824
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	437, 761
EcoRV	GATATC	1 cut(s)	1628
EcoT38I	GRGCYC	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	1125
FauNDI	CATATG	1 cut(s)	1566
Fnu4HI	GCNGC	4 cut(s)	382, 795, 1367, 1666
FokI	GGATG	3 cut(s)	653, 1016, 1322
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	382, 795, 1367, 1666
FspBI	CTAG	2 cut(s)	315, 621
GluI	GCNGC	4 cut(s)	382, 795, 1367, 1666
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	2 cut(s)	185, 440
HaeIII	GGCC	3 cut(s)	400, 880, 1759
HapII	CCGG	1 cut(s)	816
HindIII	AAGCTT	1 cut(s)	1132
HinfI	GANTC	7 cut(s)	463, 568, 607, 697, 758, 1521, 1599
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	5 cut(s)	427, 1210, 1240, 1322, 1477
Hpy166II	GTNNAC	5 cut(s)	67, 520, 1327, 1384, 1425
Hpy188I	TCNGA	6 cut(s)	86, 91, 279, 468, 1162, 1541
Hpy188III	TCNNGA	9 cut(s)	299, 376, 457, 575, 621, 746, 1518, 1525, 1603
Hpy8I	GTNNAC	5 cut(s)	67, 520, 1327, 1384, 1425
HpyAV	CCTTC	7 cut(s)	47, 318, 421, 631, 679, 969, 1380
HpyCH4III	ACNGT	5 cut(s)	889, 984, 1283, 1354, 1755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	596, 716, 1123
HpyF3I	CTNAG	7 cut(s)	83, 276, 374, 806, 1107, 1538, 1722
Kzo9I	GATC	2 cut(s)	86, 952
LguI	GCTCTTC	1 cut(s)	1004
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	3 cut(s)	368, 781, 1677
LweI	GCATC	3 cut(s)	25, 599, 1054
MabI	ACCWGGT	1 cut(s)	437
MaeI	CTAG	2 cut(s)	315, 621
MaeIII	GTNAC	4 cut(s)	148, 1033, 1465, 1646
MalI	GATC	2 cut(s)	88, 954
MboI	GATC	2 cut(s)	86, 952
MhlI	GDGCHC	2 cut(s)	96, 816
MlyI	GAGTC	1 cut(s)	1608
MmeI	TCCRAC	2 cut(s)	705, 1065
MseI	TTAA	3 cut(s)	162, 1029, 1175
MslI	CAYNNNNRTG	4 cut(s)	528, 750, 1196, 1344
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	3 cut(s)	439, 763, 816
Mva1269I	GAATGC	1 cut(s)	1558
MvaI	CCWGG	2 cut(s)	439, 763
MwoI	GCNNNNNNNGC	3 cut(s)	596, 716, 1123
NciI	CCSGG	1 cut(s)	816
NdeI	CATATG	1 cut(s)	1566
NdeII	GATC	2 cut(s)	86, 952
NlaIV	GGNNCC	1 cut(s)	826
NmeAIII	GCCGAG	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	1033, 1465
NspI	RCATGY	1 cut(s)	1710
OliI	CACNNNNGTG	1 cut(s)	1196
PagI	TCATGA	3 cut(s)	574, 745, 1524
PceI	AGGCCT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	1004
PctI	GAATGC	1 cut(s)	1558
PfeI	GAWTC	6 cut(s)	463, 568, 607, 697, 758, 1521
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	4 cut(s)	383, 796, 1368, 1667
PleI	GAGTC	1 cut(s)	1607
PpsI	GAGTC	1 cut(s)	1607
PshAI	GACNNNNGTC	1 cut(s)	1472
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	437, 761
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	437, 761
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	824
PstI	CTGCAG	1 cut(s)	940
PstNI	CAGNNNCTG	1 cut(s)	381
RsaI	GTAC	5 cut(s)	443, 788, 1058, 1424, 1622
RsaNI	GTAC	5 cut(s)	442, 787, 1057, 1423, 1621
RseI	CAYNNNNRTG	4 cut(s)	528, 750, 1196, 1344
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	1004
SaqAI	TTAA	3 cut(s)	162, 1029, 1175
SatI	GCNGC	4 cut(s)	382, 795, 1367, 1666
Sau3AI	GATC	2 cut(s)	86, 952
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	1 cut(s)	1608
ScrFI	CCNGG	3 cut(s)	439, 763, 816
SduI	GDGCHC	2 cut(s)	96, 816
SexAI	ACCWGGT	1 cut(s)	437
SfaNI	GCATC	3 cut(s)	25, 599, 1054
SfcI	CTRYAG	2 cut(s)	936, 1279
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	4 cut(s)	528, 750, 1196, 1344
SpeI	ACTAGT	1 cut(s)	314
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	4 cut(s)	337, 387, 599, 1367
SspI	AATATT	1 cut(s)	1249
SspMI	CTAG	2 cut(s)	315, 621
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	400
StyD4I	CCNGG	3 cut(s)	437, 761, 814
TaaI	ACNGT	5 cut(s)	889, 984, 1283, 1354, 1755
TaqI	TCGA	3 cut(s)	703, 1238, 1519
TatI	WGTACW	3 cut(s)	786, 1422, 1620
TauI	GCSGC	1 cut(s)	1369
TfiI	GAWTC	6 cut(s)	463, 568, 607, 697, 758, 1521
Tru1I	TTAA	3 cut(s)	162, 1029, 1175
Tru9I	TTAA	3 cut(s)	162, 1029, 1175
TscAI	CASTG	5 cut(s)	894, 1158, 1357, 1432, 1600
TseFI	GTSAC	2 cut(s)	1033, 1465
TseI	GCWGC	3 cut(s)	381, 794, 1665
Tsp45I	GTSAC	2 cut(s)	1033, 1465
TspDTI	ATGAA	8 cut(s)	438, 530, 560, 734, 771, 1346, 1513, 1541
TspRI	CASTG	5 cut(s)	894, 1158, 1357, 1432, 1600
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	8 cut(s)	280, 625, 664, 689, 1069, 1271, 1543, 1640
XbaI	TCTAGA	1 cut(s)	620
XceI	RCATGY	1 cut(s)	1710
XspI	CTAG	2 cut(s)	315, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.