Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002853

Physical Location & Seq

Genomic Coordinates Forward (+)

25185983 .. 25188101

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGCTACTTTATTGCCTCTCCTCTTCTTCCTCCTCCTTCAACCTCTCTACTCCATTGCCAATGTCCACAAACTCAACCAACTCAGATCAGAGCTCATCTCCCAATCCCCTTCTCTCAATGACACCCCACCCACCCTTGACTTTGAAGTAACCAAACCCATTCCAGTACCCAAAACCAAGCCTTGTTCTGAGCTCATTCTCCAACATGATTTTGCCTACACTTATGGAAAACCACCAGCCTTTGCTAACTACACTCCTCCCTCAAATTGCCTGTCTCAAAACTTCTCCAAGATTGTTCTTGAATGGAAAGCTACAAGCAAAGGAAGACAATTTGACCGCATTTTTGGGGTTTGGCTTTCTGGTGTTGAGCTTCTCAGGAGCTGCACAGCTGAGCCAAGGACCAATGGGATTGTCTGGAGTGTTGAGAAGGACATCAGCAGGTACTATTCGTTGCTCCAAAAGAAACAGACAGTTGCTGTTTATCTTGGCAGTTTGATTGATTCAACATACACTGGAGTTTACCATGTGAATATAAGTTTTCATTTTTATCCTGCTGAGGAGAGTCTGCATATTTATGATCAAAACGTGGGTGATTTGGCATCTGCATATCATTCTTGGGCGGATTTGATTCTGCCCATTTCGAGAAATCTGCCTTTGACTGATGGGTTGTGGTTTGAAGTTGAGAATTCAACTGATACTGAGTTGAAGGAATTCGAGATTCCTCGAAATGCTTATAGGGCTGTGTTGGAGGTTTATGTTTCATTTCATGAGAATGATGAGTTTTGGTATTCCAATCCTACTAATGAGTACATTGCTGCCAACAATCTTAGTGGCACGCCCGGAAATGGGCCTTTCAGGGAGGTTGTGGTGAGTTTAGATGGTGTGGTTGTTGGTGCTGTTTGGCCTTTTACTGTGATTTACACTGGAGGGTTCAATCCTCTTCTGTGGAGTCCCATTACCGGCATTGGTTCATTTGATCTACCTTCTTATGATATCGAAATCACACCGTTTTTAGGTAACATATTGGATGGAAAAAGCCACAAGATTGGGTTTAATGTTACCAATGCCTTGAATGTTTGGTACATAGATGCAAATTTGCATATTTGGTTGGACAAACAGAGCACAACAACTGAGGCACAGCTTGTGGAGCATACTAGCTTGCCCCTTATTGTTTCAGTGGTGTCGGATTTTGTGGGTTTAAATGGCACATTTGTGACAAGGGTCGGCAGGTCAGTCTCATCAACTGGGTGGGTGAAGTTCTCTAATGGGAATATCACAACCCAGTCAATTCAAGATTTTTCCTACCTTAATAAAATGGTCATGGGGAATGATGGCAATTTGCAGACAGTGGACCAGACCATAAATTTCAATGATACCATTCTTGTTAAGACGCCATCTTCCTATGTTCATTCACTGAAATCAAACAAATCATTTCTCCTTTCCTTGTACACTGACTTGTTGGAACAAGATGGAACTTCTTTGTATGTGACGAACGTCAATTTGGGATTTATCGAGAAGAAAACTGCAATTGGTGGTTCAAAAGTCTTGGAGAGCTCTGTCAGAAACTTGCAGAATGCAGAGGGTAATAGGGTTGTAAGAAACAATTTGGTAGTTAGCAGAGTGGGGAATACACAGCAAGTATACAGATATCATGGTGGCAGATTCTGTTACTTTAGAAATGTAAGCAGCTCAAATTCCACCATACTTTATGATGAAGTGGAGGATACATGCCACAAAAAAGCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNGaseA

Protein Analysis

583

Amino Acids

65.22

Weight (kDa)

5.66

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNGaseA	PF12222	58 - 384	5.7e-104	Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
PNGase_A_C	PF25156	403 - 480	2.3e-19	PNGase_A C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14920
fragaria_vesca	FvH4_3g18311 FvH4_3g18320 FvH4_3g18320
malus_domestica	MD03G1242900.v1.1 MD03G1243300.v1.1 MD03G1243400.v1.1
prunus_persica	Prupe.4G164900_v2.0.a1
pyrus_communis	pycom11g23210
rosa_chinensis	RchiOBHm_Chr5g0030951 RchiOBHm_Chr5g0030961 RchiOBHm_Chr5g0030971
rosa_laevigata	RLG00000033274 RLG00000033275 RLG00000033276
rosa_multiflora	Rmu_sc0001974.1_g000004 Rmu_sc0001974.1_g000008 Rmu_sc0001974.1_g000009 Rmu_sc0040817.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049310 Rroxscaffold_1G00049320
rosa_rugosa	Rorug05G0121600 Rorug05G0121700 Rorug05G0121900
rosa_samantha	Rh5AG214900 Rh5AG215000 Rh5AG215200 Rh5BG213900 Rh5BG214000 Rh5BG214200 Rh5CG237800 Rh5CG237900 Rh5CG238100 Rh5DG218500 Rh5DG218600 Rh5DG218800
rosa_wichuraiana	Rw5G019660 Rw5G019670 Rw5G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	429, 1218
AccI	GTMKAC	1 cut(s)	1641
AciI	CCGC	2 cut(s)	337, 620
AcsI	RAATTY	5 cut(s)	685, 710, 1093, 1363, 1693
AcyI	GRCGYC	1 cut(s)	1391
AfaI	GTAC	5 cut(s)	168, 443, 809, 1082, 1448
AfiI	CCNNNNNNNGG	4 cut(s)	845, 846, 959, 1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	1484, 1516
AleI	CACNNNNGTG	1 cut(s)	1211
Alw21I	GWGCWC	4 cut(s)	96, 195, 1124, 1556
Alw26I	GTCTC	2 cut(s)	279, 1240
AlwNI	CAGNNNCTG	3 cut(s)	381, 476, 1665
AoxI	GGCC	2 cut(s)	848, 902
ApeKI	GCWGC	3 cut(s)	381, 815, 1686
ApoI	RAATTY	5 cut(s)	685, 710, 1093, 1363, 1693
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 326, 358
Asp700I	GAANNNNTTC	1 cut(s)	710
AspS9I	GGNCC	3 cut(s)	399, 848, 1351
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	3 cut(s)	602, 880, 1264
AvaII	GGWCC	2 cut(s)	399, 1351
BanII	GRGCYC	3 cut(s)	96, 195, 1556
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	4 cut(s)	96, 195, 1124, 1556
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	368, 802, 1698
BccI	CCATC	6 cut(s)	656, 872, 1022, 1325, 1402, 1463
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BciVI	GTATCC	1 cut(s)	1717
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	279, 1240
BfaI	CTAG	1 cut(s)	1155
BfuAI	ACCTGC	2 cut(s)	429, 1218
BfuI	GTATCC	1 cut(s)	1717
BisI	GCNGC	3 cut(s)	382, 816, 1687
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	3 cut(s)	383, 817, 1688
Bme1390I	CCNGG	1 cut(s)	840
Bme18I	GGWCC	2 cut(s)	399, 1351
BmgT120I	GGNCC	3 cut(s)	399, 848, 1351
BmrFI	CCNGG	1 cut(s)	840
BmrI	ACTGGG	2 cut(s)	1254, 1276
BmsI	GCATC	2 cut(s)	608, 1078
BmuI	ACTGGG	2 cut(s)	1254, 1276
BoxI	GACNNNNGTC	2 cut(s)	1220, 1493
BpiI	GAAGAC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	3 cut(s)	436, 534, 945
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	1391
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	4 cut(s)	845, 846, 959, 1013
Bse118I	RCCGGY	1 cut(s)	959
Bse1I	ACTGG	5 cut(s)	164, 517, 928, 1249, 1282
Bse3DI	GCAATG	2 cut(s)	54, 810
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	1033
BseLI	CCNNNNNNNGG	4 cut(s)	845, 846, 959, 1013
BseMI	GCAATG	2 cut(s)	54, 810
BseMII	CTCAG	7 cut(s)	97, 180, 381, 388, 546, 690, 1122
BseNI	ACTGG	5 cut(s)	164, 517, 928, 1249, 1282
BseRI	GAGGAG	4 cut(s)	11, 23, 246, 572
BseXI	GCAGC	3 cut(s)	368, 802, 1698
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	850, 904
BsiHKAI	GWGCWC	4 cut(s)	96, 195, 1124, 1556
BsiSI	CCGG	2 cut(s)	840, 960
BslFI	GGGAC	1 cut(s)	936
BslI	CCNNNNNNNGG	4 cut(s)	845, 846, 959, 1013
BsmAI	GTCTC	2 cut(s)	279, 1240
BsmFI	GGGAC	1 cut(s)	936
BsmI	GAATGC	1 cut(s)	1579
BsnI	GGCC	2 cut(s)	850, 904
Bsp1286I	GDGCHC	4 cut(s)	96, 195, 1124, 1556
Bsp1407I	TGTACA	1 cut(s)	1446
Bsp143I	GATC	3 cut(s)	86, 577, 976
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	2 cut(s)	337, 620
BspANI	GGCC	2 cut(s)	850, 904
BspCNI	CTCAG	7 cut(s)	96, 181, 382, 387, 547, 691, 1123
BspHI	TCATGA	1 cut(s)	766
BspMI	ACCTGC	2 cut(s)	429, 1218
BsrDI	GCAATG	2 cut(s)	54, 810
BsrFI	RCCGGY	1 cut(s)	959
BsrGI	TGTACA	1 cut(s)	1446
BsrI	ACTGG	5 cut(s)	164, 517, 928, 1249, 1282
BssAI	RCCGGY	1 cut(s)	959
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	3 cut(s)	86, 577, 976
BssNAI	GTATAC	1 cut(s)	1642
BssNI	GRCGYC	1 cut(s)	1391
BssT1I	CCWWGG	1 cut(s)	395
Bst1107I	GTATAC	1 cut(s)	1642
Bst4CI	ACNGT	4 cut(s)	472, 913, 1008, 1348
Bst6I	CTCTTC	2 cut(s)	29, 945
BstACI	GRCGYC	1 cut(s)	1391
BstAUI	TGTACA	1 cut(s)	1446
BstC8I	GCNNGC	2 cut(s)	836, 1160
BstDEI	CTNAG	8 cut(s)	83, 189, 374, 390, 555, 699, 827, 1131
BstF5I	GGATG	1 cut(s)	1033
BstKTI	GATC	3 cut(s)	89, 580, 979
BstMAI	GTCTC	2 cut(s)	279, 1240
BstMBI	GATC	3 cut(s)	86, 577, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 1147
BstNSI	RCATGY	1 cut(s)	1731
BstPAI	GACNNNNGTC	2 cut(s)	1220, 1493
BstSCI	CCNGG	1 cut(s)	838
BstV1I	GCAGC	3 cut(s)	368, 802, 1698
BstV2I	GAAGAC	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	1046
BstZ17I	GTATAC	1 cut(s)	1642
BsuI	GTATCC	1 cut(s)	1717
BsuRI	GGCC	2 cut(s)	850, 904
BtsCI	GGATG	1 cut(s)	1033
BtsIMutI	CAGTG	6 cut(s)	510, 921, 1182, 1353, 1412, 1449
BveI	ACCTGC	2 cut(s)	429, 1218
Cac8I	GCNNGC	2 cut(s)	836, 1160
CaiI	CAGNNNCTG	3 cut(s)	381, 476, 1665
CciI	TCATGA	1 cut(s)	766
Cfr10I	RCCGGY	1 cut(s)	959
Cfr13I	GGNCC	3 cut(s)	399, 848, 1351
CseI	GACGC	1 cut(s)	1399
Csp6I	GTAC	5 cut(s)	167, 442, 808, 1081, 1447
CspCI	CAANNNNNGTGG	2 cut(s)	811, 846
CviAII	CATG	7 cut(s)	206, 524, 767, 1321, 1652, 1728, 1744
CviQI	GTAC	5 cut(s)	167, 442, 808, 1081, 1447
DdeI	CTNAG	8 cut(s)	83, 189, 374, 390, 555, 699, 827, 1131
DpnI	GATC	3 cut(s)	88, 579, 978
DpnII	GATC	3 cut(s)	86, 577, 976
DraI	TTTAAA	1 cut(s)	1200
Eam1104I	CTCTTC	2 cut(s)	29, 945
EarI	CTCTTC	2 cut(s)	29, 945
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	3 cut(s)	94, 193, 1554
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	3 cut(s)	96, 195, 1556
Eco32I	GATATC	2 cut(s)	994, 1649
Eco47I	GGWCC	2 cut(s)	399, 1351
Eco53kI	GAGCTC	3 cut(s)	94, 193, 1554
EcoICRI	GAGCTC	3 cut(s)	94, 193, 1554
EcoRI	GAATTC	2 cut(s)	685, 710
EcoRV	GATATC	2 cut(s)	994, 1649
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	3 cut(s)	96, 195, 1556
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	7 cut(s)	209, 527, 770, 1324, 1655, 1731, 1747
FaqI	GGGAC	1 cut(s)	936
FatI	CATG	7 cut(s)	205, 523, 766, 1320, 1651, 1727, 1743
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	1641
Fnu4HI	GCNGC	3 cut(s)	382, 816, 1687
FokI	GGATG	1 cut(s)	1040
FriOI	GRGCYC	3 cut(s)	96, 195, 1556
Fsp4HI	GCNGC	3 cut(s)	382, 816, 1687
FspBI	CTAG	1 cut(s)	1155
GluI	GCNGC	3 cut(s)	382, 816, 1687
GsuI	CTGGAG	3 cut(s)	436, 534, 945
HaeIII	GGCC	2 cut(s)	850, 904
HapII	CCGG	2 cut(s)	840, 960
HgaI	GACGC	1 cut(s)	1399
Hin1I	GRCGYC	1 cut(s)	1391
Hin1II	CATG	7 cut(s)	209, 527, 770, 1324, 1655, 1731, 1747
HinfI	GANTC	6 cut(s)	500, 562, 628, 718, 949, 1662
HpaII	CCGG	2 cut(s)	840, 960
HphI	GGTGA	3 cut(s)	602, 880, 1264
Hpy166II	GTNNAC	5 cut(s)	67, 520, 1351, 1449, 1642
Hpy188I	TCNGA	5 cut(s)	86, 91, 190, 1186, 1562
Hpy188III	TCNNGA	8 cut(s)	299, 376, 415, 642, 715, 767, 1292, 1513
Hpy8I	GTNNAC	5 cut(s)	67, 520, 1351, 1449, 1642
HpyAV	CCTTC	5 cut(s)	47, 120, 421, 700, 993
HpyCH4III	ACNGT	4 cut(s)	472, 913, 1008, 1348
HpyCH4IV	ACGT	2 cut(s)	585, 1494
HpyCH4V	TGCA	9 cut(s)	384, 568, 605, 1091, 1099, 1342, 1526, 1570, 1577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 1147
HpyF3I	CTNAG	8 cut(s)	83, 189, 374, 390, 555, 699, 827, 1131
HpySE526I	ACGT	2 cut(s)	585, 1494
Hsp92I	GRCGYC	1 cut(s)	1391
Hsp92II	CATG	7 cut(s)	209, 527, 770, 1324, 1655, 1731, 1747
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	86, 577, 976
LmnI	GCTCC	3 cut(s)	378, 459, 1147
Lsp1109I	GCAGC	3 cut(s)	368, 802, 1698
LweI	GCATC	2 cut(s)	608, 1078
MaeI	CTAG	1 cut(s)	1155
MaeII	ACGT	2 cut(s)	585, 1494
MaeIII	GTNAC	6 cut(s)	148, 1016, 1057, 1213, 1486, 1667
MalI	GATC	3 cut(s)	88, 579, 978
MboI	GATC	3 cut(s)	86, 577, 976
MboII	GAAGA	6 cut(s)	16, 19, 336, 932, 1389, 1528
MfeI	CAATTG	1 cut(s)	1527
MhlI	GDGCHC	4 cut(s)	96, 195, 1124, 1556
MlyI	GAGTC	2 cut(s)	571, 958
MmeI	TCCRAC	5 cut(s)	226, 726, 1089, 1164, 1440
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	4 cut(s)	1053, 1199, 1308, 1386
MslI	CAYNNNNRTG	3 cut(s)	573, 771, 1211
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	840, 960
MspR9I	CCNGG	1 cut(s)	840
MunI	CAATTG	1 cut(s)	1527
Mva1269I	GAATGC	1 cut(s)	1579
MwoI	GCNNNNNNNGC	2 cut(s)	737, 1147
NciI	CCSGG	1 cut(s)	840
NdeII	GATC	3 cut(s)	86, 577, 976
NlaIII	CATG	7 cut(s)	209, 527, 770, 1324, 1655, 1731, 1747
NmuCI	GTSAC	2 cut(s)	1213, 1486
NspI	RCATGY	1 cut(s)	1731
OliI	CACNNNNGTG	1 cut(s)	1211
PagI	TCATGA	1 cut(s)	766
PctI	GAATGC	1 cut(s)	1579
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	4 cut(s)	500, 628, 718, 1662
PkrI	GCNGC	3 cut(s)	383, 817, 1688
PleI	GAGTC	2 cut(s)	570, 957
PpsI	GAGTC	2 cut(s)	570, 957
PshAI	GACNNNNGTC	2 cut(s)	1220, 1493
Psp124BI	GAGCTC	3 cut(s)	96, 195, 1556
PspPI	GGNCC	3 cut(s)	399, 848, 1351
PstNI	CAGNNNCTG	3 cut(s)	381, 476, 1665
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	5 cut(s)	168, 443, 809, 1082, 1448
RsaNI	GTAC	5 cut(s)	167, 442, 808, 1081, 1447
RseI	CAYNNNNRTG	3 cut(s)	573, 771, 1211
SacI	GAGCTC	3 cut(s)	96, 195, 1556
SaqAI	TTAA	4 cut(s)	1053, 1199, 1308, 1386
SatI	GCNGC	3 cut(s)	382, 816, 1687
Sau3AI	GATC	3 cut(s)	86, 577, 976
Sau96I	GGNCC	3 cut(s)	399, 848, 1351
SchI	GAGTC	2 cut(s)	571, 958
ScrFI	CCNGG	1 cut(s)	840
SduI	GDGCHC	4 cut(s)	96, 195, 1124, 1556
SfaNI	GCATC	2 cut(s)	608, 1078
SinI	GGWCC	2 cut(s)	399, 1351
SmiMI	CAYNNNNRTG	3 cut(s)	573, 771, 1211
SsiI	CCGC	2 cut(s)	337, 620
SspMI	CTAG	1 cut(s)	1155
SstI	GAGCTC	3 cut(s)	96, 195, 1556
StyD4I	CCNGG	1 cut(s)	838
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	4 cut(s)	472, 913, 1008, 1348
TaiI	ACGT	2 cut(s)	588, 1497
TaqI	TCGA	5 cut(s)	641, 714, 724, 996, 1512
TatI	WGTACW	2 cut(s)	807, 1446
TfiI	GAWTC	4 cut(s)	500, 628, 718, 1662
Tru1I	TTAA	4 cut(s)	1053, 1199, 1308, 1386
Tru9I	TTAA	4 cut(s)	1053, 1199, 1308, 1386
TscAI	CASTG	6 cut(s)	517, 928, 1182, 1353, 1419, 1456
TseFI	GTSAC	2 cut(s)	1213, 1486
TseI	GCWGC	3 cut(s)	381, 815, 1686
Tsp45I	GTSAC	2 cut(s)	1213, 1486
TspDTI	ATGAA	6 cut(s)	530, 750, 755, 960, 1397, 1728
TspRI	CASTG	6 cut(s)	517, 928, 1182, 1353, 1419, 1456
VpaK11BI	GGWCC	2 cut(s)	399, 1351
XapI	RAATTY	5 cut(s)	685, 710, 1093, 1363, 1693
XceI	RCATGY	1 cut(s)	1731
XmiI	GTMKAC	1 cut(s)	1641
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.