FvH4_3g18311

peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11700844 .. 11703053
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18311.t1

Sequence Viewer

Length: 1803 bp
ATGGCTTCTCTGTTGAATCTCCTCTTGTTCCTCCTCCTTCAACCTCTCTTCTCCACTGCCAACGTCTACAAACTCAACCAACTGAGATCAGACCTCATCTCCAACCCAACACCTCTAAATGACACCCCACCAACCCTCTACTTTGAAGTCACCAAACCCATCAAACTACCCAAAACCAAGCCTTGTTCCCAACTCATTCTCCAACATGACTTTGCCTACACTTACGGAAAACCACCAGTCTTTGCTAACTACACTCCTCCCTCAGATTGCCCATCTCAGAATTTCTCCAAGATTGTTCTTGAATGGAGAGCTACAAGCAAAGGAAGACAATTTGATCGCATTTTTGGGGTTTGGCTTTCTGGGGTTGAGCTTCTCAGGAGCTGCACAGCTGAGCCAAGGCCTAATGGTATTGTTTGGAGTGTTGAGAAGGACATCACCAGGTACTATTCATTGCTTCAAAAGAATCAGACACTTGCTGTCTATCTTGGCAATTTGATTGATAAGACATATACTGGGGTTTACCATGTGAATATAAGATTTCATTTTTATCCTGCTGAGGCAAGTTTGCATAGTTATGATCAAAATGTGGATAATTTGGCATCTGGGTATCATTCTTGGGCGGATTTGATTCTGCCCATTTCGAGAAATTTGCCTTTGAATGATGGGTTGTGGTTTGAAATTGAGAATTCGACTGATACTAAGTTGAAGGAATTTGTGATTCCTCAAAATGCTTATAGGGCTGTGTTGGAAGTGTATGTTTCCTTTCATGAGAATGATGAATCATGGTATGCAAATCCTACTAATGAGTACATTGCTGCAAACAACCTTAGCTTGCCTGGAAATGGACCTTTTAGGGAGGTTGTGGTCAGTATAGATGATCAGATTGTTGGTGCTGTCTGGCCTTTTACAGTGATATTCACAGGAGGGGTCAATCCTCTCTTGTGGAGACCCATTACTGCAATTGGCTCATACAATCTCCCTTCTTATGACATCGAGATCACACCGTTTTTAGGGAACATATTGGATGGGAAGAGCCACAAGATTGGGTTTAATGTCACCAATGCCTTGAATGTTTGGTACATAGATGCAAATCTGCATATTTGGTTGGACAAACAGAGCAAAAGAACTGAGGGACAGCTTGTGAAGCATGCTAGCTTGCCCCTTGTTGTTTCACTAGTGTCGGATTTCAAGGGTTTAAATGGCACATTTATAACAAGGACAAGCAGGTCTGTCTCATCGACTGGGTGGGTGAAGTCATCTAATGGGAATGTTACAACCCAGTCAGTTCAGGAATTTTACTACGGTAATACAATGGTCATGGGGAGTAATGGTAATGTGCAGATAGTGAACCAGAACATCCATTTCAATGACACCGTTCACAGCAAGCTGCCTTCCTCCATTGTTCAGTCACTCACATCACACAAGACATTTCCCCTTTACTTGTATACTGACTACTTGGAGCAAAAAAATAATTCATACTTATTGGTGACGAATATTAGTTTGGGATTTATTGAGAAGAAAACCGCGAGCGCTGGTTCTCAATTCTTGAAGAGCTCTCTAAAGAATTTGCAGAATGCTGAGGGTAATATGGTTGTAAAAGATCATTTGGTAGTTAGTGGAGTGGGGAATACACAGCAAGTGTACATATATCATGGTGGAAAATCTTGTTACTTTAGGAATATAAGCAGCTCAAACTACACCATACTTTATGATAAGGTCGTGAATACATGCAACAATAAACCAAAGTCTGATTGGGATTTTGGTTTGAGTAGACTATGGCCTTTTGGTGCTGGAATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

601

Amino Acids

67.52

Weight (kDa)

8.31

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNGaseA PF12222 59 - 383 1.8e-104 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
PNGase_A_C PF25156 402 - 479 4.5e-19 PNGase_A C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1211
AasI GACNNNNNNGTC 1 cut(s) 1225
Acc36I ACCTGC 1 cut(s) 1215
AccI GTMKAC 3 cut(s) 66, 1445, 1771
AccII CGCG 1 cut(s) 1526
AciI CCGC 2 cut(s) 620, 1524
AcsI RAATTY 6 cut(s) 280, 646, 685, 710, 1292, 1564
AfaI GTAC 4 cut(s) 443, 809, 1079, 1643
AfeI AGCGCT 1 cut(s) 1531
AfiI CCNNNNNNNGG 2 cut(s) 842, 1010
AhlI ACTAGT 1 cut(s) 1174
AjnI CCWGG 2 cut(s) 437, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 1484, 1516
Alw21I GWGCWC 1 cut(s) 1556
Alw26I GTCTC 2 cut(s) 940, 1237
AlwNI CAGNNNCTG 1 cut(s) 381
Aor51HI AGCGCT 1 cut(s) 1531
AoxI GGCC 3 cut(s) 398, 899, 1778
ApeKI GCWGC 4 cut(s) 381, 815, 1387, 1686
ApoI RAATTY 6 cut(s) 280, 646, 685, 710, 1292, 1564
AspLEI GCGC 1 cut(s) 1532
AspS9I GGNCC 1 cut(s) 845
AsuHPI GGTGA 5 cut(s) 142, 427, 1048, 1261, 1498
AsuNHI GCTAGC 1 cut(s) 1151
AvaII GGWCC 1 cut(s) 845
BanII GRGCYC 1 cut(s) 1556
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 1556
BbvCI CCTCAGC 2 cut(s) 555, 1578
BbvI GCAGC 4 cut(s) 368, 802, 1374, 1698
BccI CCATC 4 cut(s) 167, 280, 656, 1019
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciT130I CCWGG 2 cut(s) 439, 837
BclI TGATCA 2 cut(s) 577, 877
BcoDI GTCTC 2 cut(s) 940, 1237
BcuI ACTAGT 1 cut(s) 1174
BfaI CTAG 2 cut(s) 1152, 1175
BfoI RGCGCY 1 cut(s) 1533
BfuAI ACCTGC 1 cut(s) 1215
BisI GCNGC 4 cut(s) 382, 816, 1388, 1687
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 4 cut(s) 383, 817, 1389, 1688
Bme1390I CCNGG 2 cut(s) 439, 837
Bme18I GGWCC 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 845
BmrFI CCNGG 2 cut(s) 439, 837
BmrI ACTGGG 3 cut(s) 522, 1251, 1273
BmsI GCATC 2 cut(s) 608, 1075
BmtI GCTAGC 1 cut(s) 1155
BmuI ACTGGG 3 cut(s) 522, 1251, 1273
BpiI GAAGAC 1 cut(s) 331
Bpu10I CCTNAGC 3 cut(s) 555, 827, 1578
Bpu1102I GCTNAGC 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 1089
BsaI GGTCTC 1 cut(s) 940
BsaJI CCNNGG 1 cut(s) 395
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 183, 213, 1315, 1345
Bsc4I CCNNNNNNNGG 2 cut(s) 842, 1010
Bse1I ACTGG 4 cut(s) 236, 517, 1246, 1279
Bse3DI GCAATG 2 cut(s) 449, 810
Bse8I GATNNNNATC 1 cut(s) 1089
BseBI CCWGG 2 cut(s) 439, 837
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 2 cut(s) 1030, 1356
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 2 cut(s) 842, 1010
BseMI GCAATG 2 cut(s) 449, 810
BseMII CTCAG 8 cut(s) 74, 276, 290, 381, 388, 546, 1119, 1569
BseNI ACTGG 4 cut(s) 236, 517, 1246, 1279
BseRI GAGGAG 3 cut(s) 11, 23, 246
BseXI GCAGC 4 cut(s) 368, 802, 1374, 1698
BsgI GTGCAG 2 cut(s) 367, 1358
Bsh1236I CGCG 1 cut(s) 1526
BshFI GGCC 3 cut(s) 400, 901, 1780
BsiHKAI GWGCWC 1 cut(s) 1556
BslFI GGGAC 1 cut(s) 1146
BslI CCNNNNNNNGG 2 cut(s) 842, 1010
BsmAI GTCTC 2 cut(s) 940, 1237
BsmFI GGGAC 1 cut(s) 1146
BsmI GAATGC 1 cut(s) 1579
BsnI GGCC 3 cut(s) 400, 901, 1780
Bso31I GGTCTC 1 cut(s) 940
Bsp1286I GDGCHC 1 cut(s) 1556
Bsp1407I TGTACA 1 cut(s) 1641
Bsp143I GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 2 cut(s) 620, 1524
BspANI GGCC 3 cut(s) 400, 901, 1780
BspCNI CTCAG 8 cut(s) 75, 275, 289, 382, 387, 547, 1120, 1570
BspFNI CGCG 1 cut(s) 1526
BspHI TCATGA 1 cut(s) 766
BspMI ACCTGC 1 cut(s) 1215
BspOI GCTAGC 1 cut(s) 1155
BspQI GCTCTTC 2 cut(s) 1025, 1544
BspTNI GGTCTC 1 cut(s) 940
BsrDI GCAATG 2 cut(s) 449, 810
BsrGI TGTACA 1 cut(s) 1641
BsrI ACTGG 4 cut(s) 236, 517, 1246, 1279
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
BssNAI GTATAC 1 cut(s) 1446
BssT1I CCWWGG 1 cut(s) 395
Bst1107I GTATAC 1 cut(s) 1446
Bst2UI CCWGG 2 cut(s) 439, 837
Bst4CI ACNGT 4 cut(s) 910, 1005, 1304, 1375
Bst6I CTCTTC 3 cut(s) 53, 1025, 1544
BstAUI TGTACA 1 cut(s) 1641
BstC8I GCNNGC 6 cut(s) 833, 1149, 1153, 1157, 1385, 1528
BstF5I GGATG 2 cut(s) 1030, 1356
BstFNI CGCG 1 cut(s) 1526
BstH2I RGCGCY 1 cut(s) 1533
BstHHI GCGC 1 cut(s) 1532
BstKTI GATC 6 cut(s) 89, 337, 580, 880, 999, 1603
BstMAI GTCTC 2 cut(s) 940, 1237
BstMBI GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
BstMWI GCNNNNNNNGC 2 cut(s) 737, 1144
BstNI CCWGG 2 cut(s) 439, 837
BstNSI RCATGY 2 cut(s) 1151, 1731
BstSCI CCNGG 2 cut(s) 437, 835
BstUI CGCG 1 cut(s) 1526
BstV1I GCAGC 4 cut(s) 368, 802, 1374, 1698
BstV2I GAAGAC 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 1043
BstZ17I GTATAC 1 cut(s) 1446
BsuRI GGCC 3 cut(s) 400, 901, 1780
BtsCI GGATG 2 cut(s) 1030, 1356
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 915
BveI ACCTGC 1 cut(s) 1215
Cac8I GCNNGC 6 cut(s) 833, 1149, 1153, 1157, 1385, 1528
CaiI CAGNNNCTG 1 cut(s) 381
CciI TCATGA 1 cut(s) 766
CfoI GCGC 1 cut(s) 1532
Cfr13I GGNCC 1 cut(s) 845
CsiI ACCWGGT 1 cut(s) 437
Csp6I GTAC 4 cut(s) 442, 808, 1078, 1642
CviAII CATG 8 cut(s) 206, 524, 767, 783, 1148, 1318, 1652, 1728
CviQI GTAC 4 cut(s) 442, 808, 1078, 1642
DpnI GATC 6 cut(s) 88, 336, 579, 879, 998, 1602
DpnII GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
DraI TTTAAA 1 cut(s) 1197
DrdI GACNNNNNNGTC 1 cut(s) 1225
DseDI GACNNNNNNGTC 1 cut(s) 1225
Eam1104I CTCTTC 3 cut(s) 53, 1025, 1544
EarI CTCTTC 3 cut(s) 53, 1025, 1544
EciI GGCGGA 1 cut(s) 635
Ecl136II GAGCTC 1 cut(s) 1554
Eco130I CCWWGG 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 1556
Eco31I GGTCTC 1 cut(s) 940
Eco47I GGWCC 1 cut(s) 845
Eco47III AGCGCT 1 cut(s) 1531
Eco53kI GAGCTC 1 cut(s) 1554
EcoICRI GAGCTC 1 cut(s) 1554
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 437, 835
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 1556
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 8 cut(s) 209, 527, 770, 786, 1151, 1321, 1655, 1731
FaqI GGGAC 1 cut(s) 1146
FatI CATG 8 cut(s) 205, 523, 766, 782, 1147, 1317, 1651, 1727
FbaI TGATCA 2 cut(s) 577, 877
FblI GTMKAC 3 cut(s) 66, 1445, 1771
Fnu4HI GCNGC 4 cut(s) 382, 816, 1388, 1687
FokI GGATG 2 cut(s) 1037, 1343
FriOI GRGCYC 1 cut(s) 1556
Fsp4HI GCNGC 4 cut(s) 382, 816, 1388, 1687
FspBI CTAG 2 cut(s) 1152, 1175
GlaI GCGC 1 cut(s) 1531
GluI GCNGC 4 cut(s) 382, 816, 1388, 1687
HaeII RGCGCY 1 cut(s) 1533
HaeIII GGCC 3 cut(s) 400, 901, 1780
HhaI GCGC 1 cut(s) 1532
Hin1II CATG 8 cut(s) 209, 527, 770, 786, 1151, 1321, 1655, 1731
Hin6I GCGC 1 cut(s) 1530
HinP1I GCGC 1 cut(s) 1530
HinfI GANTC 5 cut(s) 16, 463, 628, 718, 779
HphI GGTGA 5 cut(s) 142, 427, 1048, 1261, 1498
Hpy166II GTNNAC 7 cut(s) 67, 520, 1348, 1378, 1446, 1642, 1772
Hpy188I TCNGA 7 cut(s) 91, 265, 279, 468, 882, 1183, 1750
Hpy188III TCNNGA 8 cut(s) 299, 376, 642, 767, 994, 1289, 1546, 1720
Hpy8I GTNNAC 7 cut(s) 67, 520, 1348, 1378, 1446, 1642, 1772
HpyAV CCTTC 5 cut(s) 47, 421, 700, 990, 1401
HpyCH4III ACNGT 4 cut(s) 910, 1005, 1304, 1375
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 737, 1144
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 8 cut(s) 209, 527, 770, 786, 1151, 1321, 1655, 1731
HspAI GCGC 1 cut(s) 1530
Ksp22I TGATCA 2 cut(s) 577, 877
Kzo9I GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
LguI GCTCTTC 2 cut(s) 1025, 1544
LmnI GCTCC 2 cut(s) 378, 1459
Lsp1109I GCAGC 4 cut(s) 368, 802, 1374, 1698
LweI GCATC 2 cut(s) 608, 1075
MabI ACCWGGT 1 cut(s) 437
MaeI CTAG 2 cut(s) 1152, 1175
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 6 cut(s) 148, 1054, 1270, 1407, 1486, 1667
MalI GATC 6 cut(s) 88, 336, 579, 879, 998, 1602
MboI GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
MboII GAAGA 5 cut(s) 40, 336, 1042, 1528, 1561
MfeI CAATTG 1 cut(s) 960
MhlI GDGCHC 1 cut(s) 1556
MmeI TCCRAC 5 cut(s) 126, 226, 726, 1086, 1161
MseI TTAA 2 cut(s) 1050, 1196
MslI CAYNNNNRTG 3 cut(s) 573, 771, 1365
MspA1I CMGCKG 1 cut(s) 389
MspR9I CCNGG 2 cut(s) 439, 837
MunI CAATTG 1 cut(s) 960
Mva1269I GAATGC 1 cut(s) 1579
MvaI CCWGG 2 cut(s) 439, 837
MvnI CGCG 1 cut(s) 1526
MwoI GCNNNNNNNGC 2 cut(s) 737, 1144
NdeII GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
NheI GCTAGC 1 cut(s) 1151
NlaIII CATG 8 cut(s) 209, 527, 770, 786, 1151, 1321, 1655, 1731
NmuCI GTSAC 4 cut(s) 148, 1054, 1407, 1486
NspI RCATGY 2 cut(s) 1151, 1731
PaeI GCATGC 1 cut(s) 1151
PagI TCATGA 1 cut(s) 766
PceI AGGCCT 1 cut(s) 400
PciSI GCTCTTC 2 cut(s) 1025, 1544
PctI GAATGC 1 cut(s) 1579
PfeI GAWTC 5 cut(s) 16, 463, 628, 718, 779
PkrI GCNGC 4 cut(s) 383, 817, 1389, 1688
PsiI TTATAA 1 cut(s) 1211
Psp124BI GAGCTC 1 cut(s) 1556
Psp6I CCWGG 2 cut(s) 437, 835
PspGI CCWGG 2 cut(s) 437, 835
PspPI GGNCC 1 cut(s) 845
PstNI CAGNNNCTG 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 4 cut(s) 443, 809, 1079, 1643
RsaNI GTAC 4 cut(s) 442, 808, 1078, 1642
RseI CAYNNNNRTG 3 cut(s) 573, 771, 1365
SacI GAGCTC 1 cut(s) 1556
SapI GCTCTTC 2 cut(s) 1025, 1544
SaqAI TTAA 2 cut(s) 1050, 1196
SatI GCNGC 4 cut(s) 382, 816, 1388, 1687
Sau3AI GATC 6 cut(s) 86, 334, 577, 877, 996, 1600
Sau96I GGNCC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 439, 837
SduI GDGCHC 1 cut(s) 1556
SexAI ACCWGGT 1 cut(s) 437
SfaNI GCATC 2 cut(s) 608, 1075
SinI GGWCC 1 cut(s) 845
SmiMI CAYNNNNRTG 3 cut(s) 573, 771, 1365
SpeI ACTAGT 1 cut(s) 1174
SphI GCATGC 1 cut(s) 1151
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 2 cut(s) 620, 1524
SspI AATATT 1 cut(s) 1495
SspMI CTAG 2 cut(s) 1152, 1175
SstI GAGCTC 1 cut(s) 1556
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 2 cut(s) 437, 835
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 4 cut(s) 910, 1005, 1304, 1375
TaiI ACGT 1 cut(s) 66
TaqI TCGA 4 cut(s) 641, 689, 993, 1238
TatI WGTACW 2 cut(s) 807, 1641
TfiI GAWTC 5 cut(s) 16, 463, 628, 718, 779
Tru1I TTAA 2 cut(s) 1050, 1196
Tru9I TTAA 2 cut(s) 1050, 1196
TscAI CASTG 2 cut(s) 61, 915
TseFI GTSAC 4 cut(s) 148, 1054, 1407, 1486
TseI GCWGC 4 cut(s) 381, 815, 1387, 1686
Tsp45I GTSAC 4 cut(s) 148, 1054, 1407, 1486
TspDTI ATGAA 5 cut(s) 438, 530, 755, 792, 1464
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 2 cut(s) 61, 915
VpaK11BI GGWCC 1 cut(s) 845
XapI RAATTY 6 cut(s) 280, 646, 685, 710, 1292, 1564
XceI RCATGY 2 cut(s) 1151, 1731
XcmI CCANNNNNNNNNTGG 1 cut(s) 1749
XmiI GTMKAC 3 cut(s) 66, 1445, 1771
XspI CTAG 2 cut(s) 1152, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.