Rmu_sc0001974.1_g000011

Rab3 gtpase-activating protein non-catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001974.1
OG0013168
Physical Location & Seq
Reverse (-)
48492 .. 52982
4491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001974.1_g000011.1.cds

Sequence Viewer

Length: 1353 bp
atggcgaggcgggttcacacgacggaggtgggctgcatagcgtgcgaggagctcggcgagctcggcgccggaaaggaggggtggctcgtggacactccgaacctcctctgcgccatcgacactcactgcatcgcgctcgcgaaccggtccgtgattgtggtactcgggtgggccgagcccgacgggagccgggtcaaaatccgacccgaattgtcgccgattgaggccgagttcgtgacggcgattgagtggctggtgtttgatgagatgcgggtcgttgtggccgggacttctgctggctatctcctcttttactctttggctggacatttgatccataaacagatggtatatccagctaggatcatacggttgagggtccgaggaacgaagagagatttgagccatgatacatcctcggaggaggtttgtgttgttatgccaggcattctcgcccgttttgatggttcggatattcagaataagctgcagcagtggtttcaagaaacacagtctcatttttgggatcgaaatcggaggtctgatgatttgggaaattcttatggaaaattaccttaccaattatggagtgtcagcaagtatggtagttgtgctgatgcagcaatcactggcataatgcctccgccactgatggaaatccagtcaagtgaacattatttctgtggaatcactgttggagaggatgcagtaatttcagccttcagactttcggaagataaaaatagatctttcgtgggagctatcttgtctaaagttgtgcctgcaacattttcaacaatagcctcattctcaaaactgatatggcgaagtgaacagacttcacctaagaaattagatgagacacctcaaccatttgctcgagcttctccattgacatgtttgaaggacttcccaagaaagggtgagaagcttaccttatcacctagtggcacattggctgcaattacagattcacttggtcgcatattgcttttagacactcaagcacttgtcatagtgcgactgtggaagggatatcgggatgctagttgcctattcacggagatgctggtcaataaaaacactgcagcttctagttcccgttattatgaacctaccaagagtgattactgcctgtgtttggtcattcatgcccctagaaaaggaattattgagatttggcagatgagaaccggaccaaggcttcgaagttttgtgtgtgccaaaggtagcaagatactgcaacctacttacagatttggatcgtcaatagcctctccttatgttcctttggaggttttcttgttgaacggcgactctggtcagatatcagttttaaatcgaactctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAB3GAP2_N

Protein Analysis

450

Amino Acids

50.02

Weight (kDa)

8.52

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14910
fragaria_vesca FvH4_3g18310 FvH4_3g18310 FvH4_3g18310
malus_domestica MD03G1243500.v1.1
prunus_persica Prupe.4G164800_v2.0.a1
pyrus_communis pycom03g19020
rosa_chinensis RchiOBHm_Chr5g0030941
rosa_laevigata RLG00000033273
rosa_multiflora Rmu_sc0001974.1_g000011
rosa_roxburghii Rroxscaffold_1G00049330
rosa_rugosa Rorug05G0121600 Rorug05G0121600
rosa_samantha Rh5AG214800 Rh5BG213800 Rh5CG237700 Rh5DG218400
rosa_wichuraiana Rw5G019650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 2 cut(s) 134, 140
AciI CCGC 3 cut(s) 10, 271, 644
AclWI GGATC 4 cut(s) 328, 371, 534, 1270
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 947
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 6 cut(s) 919, 920, 1060, 1141, 1163, 1200
AflIII ACRYGT 1 cut(s) 896
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 4 cut(s) 503, 795, 904, 1309
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 8 cut(s) 52, 61, 359, 487, 761, 884, 931, 1091
AluI AGCT 8 cut(s) 52, 61, 359, 487, 761, 884, 931, 1091
Alw21I GWGCWC 2 cut(s) 54, 63
Alw26I GTCTC 2 cut(s) 519, 854
AlwI GGATC 4 cut(s) 328, 371, 534, 1270
Ama87I CYCGRG 2 cut(s) 164, 879
AoxI GGCC 3 cut(s) 171, 225, 282
ApeKI GCWGC 6 cut(s) 33, 487, 490, 620, 959, 1088
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 1188, 1220
AsiGI ACCGGT 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 908
AspLEI GCGC 3 cut(s) 68, 113, 136
AspS9I GGNCC 4 cut(s) 147, 171, 379, 1196
AsuC2I CCSGG 2 cut(s) 191, 286
AsuHPI GGTGA 3 cut(s) 834, 933, 935
AsuII TTCGAA 1 cut(s) 1207
AvaI CYCGRG 2 cut(s) 164, 879
AvaII GGWCC 3 cut(s) 147, 379, 1196
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 3 cut(s) 54, 63, 180
BauI CACGAG 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 54, 63
BbvI GCAGC 6 cut(s) 20, 474, 502, 632, 946, 1100
BccI CCATC 4 cut(s) 122, 340, 458, 646
BceAI ACGGC 2 cut(s) 255, 1327
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 2 cut(s) 191, 286
BcoDI GTCTC 2 cut(s) 519, 854
BfaI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
BfmI CTRYAG 2 cut(s) 488, 1086
BfoI RGCGCY 1 cut(s) 69
BglII AGATCT 1 cut(s) 746
BisI GCNGC 6 cut(s) 34, 488, 491, 621, 960, 1089
BlsI GCNGC 6 cut(s) 35, 489, 492, 622, 961, 1090
Bme1390I CCNGG 3 cut(s) 191, 286, 444
Bme18I GGWCC 3 cut(s) 147, 379, 1196
BmeT110I CYCGRG 2 cut(s) 164, 879
BmgT120I GGNCC 4 cut(s) 147, 171, 379, 1196
BmiI GGNNCC 3 cut(s) 67, 188, 380
BmrFI CCNGG 3 cut(s) 191, 286, 444
BmsI GCATC 6 cut(s) 138, 258, 607, 694, 1033, 1056
BoxI GACNNNNGTC 1 cut(s) 1320
Bpu14I TTCGAA 1 cut(s) 1207
BpuEI CTTGAG 1 cut(s) 987
BpuMI CCSGG 2 cut(s) 191, 286
BsaBI GATNNNNATC 3 cut(s) 531, 656, 1261
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 382, 417, 1199
BsaWI WCCGGW 2 cut(s) 144, 1193
Bsc4I CCNNNNNNNGG 6 cut(s) 919, 920, 1060, 1141, 1163, 1200
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 634, 661
Bse8I GATNNNNATC 3 cut(s) 531, 656, 1261
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 382, 417, 1199
BseGI GGATG 3 cut(s) 413, 709, 1048
BseJI GATNNNNATC 3 cut(s) 531, 656, 1261
BseLI CCNNNNNNNGG 6 cut(s) 919, 920, 1060, 1141, 1163, 1200
BseNI ACTGG 2 cut(s) 634, 661
BseRI GAGGAG 4 cut(s) 62, 95, 296, 437
BseXI GCAGC 6 cut(s) 20, 474, 502, 632, 946, 1100
Bsh1236I CGCG 2 cut(s) 134, 140
BshFI GGCC 3 cut(s) 173, 227, 284
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 54, 63
BsiHKCI CYCGRG 2 cut(s) 164, 879
BsiSI CCGG 5 cut(s) 69, 145, 190, 285, 1194
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 6 cut(s) 919, 920, 1060, 1141, 1163, 1200
BsmAI GTCTC 2 cut(s) 519, 854
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 3 cut(s) 173, 227, 284
BsoBI CYCGRG 2 cut(s) 164, 879
Bsp119I TTCGAA 1 cut(s) 1207
Bsp1286I GDGCHC 3 cut(s) 54, 63, 180
Bsp143I GATC 5 cut(s) 333, 363, 526, 746, 1262
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 3 cut(s) 10, 271, 644
BspANI GGCC 3 cut(s) 173, 227, 284
BspFNI CGCG 2 cut(s) 134, 140
BspLI GGNNCC 3 cut(s) 67, 188, 380
BspMAI CTGCAG 2 cut(s) 492, 1090
BspPI GGATC 4 cut(s) 328, 371, 534, 1270
BspT104I TTCGAA 1 cut(s) 1207
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 2 cut(s) 634, 661
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 382, 417, 1199
BssMI GATC 5 cut(s) 333, 363, 526, 746, 1262
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 1199
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 4 cut(s) 372, 513, 694, 1026
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 1207
BstC8I GCNNGC 5 cut(s) 43, 59, 138, 298, 783
BstDEI CTNAG 1 cut(s) 846
BstENI CCTNNNNNAGG 1 cut(s) 1161
BstF5I GGATG 3 cut(s) 413, 709, 1048
BstFNI CGCG 2 cut(s) 134, 140
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 3 cut(s) 68, 113, 136
BstKTI GATC 5 cut(s) 336, 366, 529, 749, 1265
BstMAI GTCTC 2 cut(s) 519, 854
BstMBI GATC 5 cut(s) 333, 363, 526, 746, 1262
BstMWI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 900
BstPAI GACNNNNGTC 1 cut(s) 1320
BstSCI CCNGG 3 cut(s) 189, 284, 442
BstSFI CTRYAG 2 cut(s) 488, 1086
BstUI CGCG 2 cut(s) 134, 140
BstV1I GCAGC 6 cut(s) 20, 474, 502, 632, 946, 1100
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BsuRI GGCC 3 cut(s) 173, 227, 284
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 413, 709, 1048
BtsI GCAGTG 3 cut(s) 124, 500, 1083
BtsIMutI CAGTG 6 cut(s) 124, 500, 627, 647, 690, 1083
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 5 cut(s) 43, 59, 138, 298, 783
CfoI GCGC 3 cut(s) 68, 113, 136
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 4 cut(s) 147, 171, 379, 1196
CpoI CGGWCCG 1 cut(s) 147
Csp6I GTAC 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 144
CspI CGGWCCG 1 cut(s) 147
CviAII CATG 3 cut(s) 407, 897, 1151
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 1 cut(s) 846
DinI GGCGCC 1 cut(s) 67
DpnI GATC 5 cut(s) 335, 365, 528, 748, 1264
DpnII GATC 5 cut(s) 333, 363, 526, 746, 1262
DraI TTTAAA 1 cut(s) 1338
DraIII CACNNNGTG 1 cut(s) 947
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 1 cut(s) 633
Ecl136II GAGCTC 2 cut(s) 52, 61
Eco130I CCWWGG 1 cut(s) 1199
Eco24I GRGCYC 3 cut(s) 54, 63, 180
Eco32I GATATC 2 cut(s) 1037, 1329
Eco47I GGWCC 3 cut(s) 147, 379, 1196
Eco53kI GAGCTC 2 cut(s) 52, 61
Eco57I CTGAAG 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 164, 879
EcoICRI GAGCTC 2 cut(s) 52, 61
EcoNI CCTNNNNNAGG 1 cut(s) 1161
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 2 cut(s) 1037, 1329
EcoT14I CCWWGG 1 cut(s) 1199
EcoT38I GRGCYC 3 cut(s) 54, 63, 180
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 1199
FaeI CATG 3 cut(s) 410, 900, 1154
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 406, 896, 1150
FauI CCCGC 2 cut(s) 3, 264
Fnu4HI GCNGC 6 cut(s) 34, 488, 491, 621, 960, 1089
FokI GGATG 3 cut(s) 400, 716, 1055
FriOI GRGCYC 3 cut(s) 54, 63, 180
Fsp4HI GCNGC 6 cut(s) 34, 488, 491, 621, 960, 1089
FspBI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
GlaI GCGC 3 cut(s) 67, 112, 135
GluI GCNGC 6 cut(s) 34, 488, 491, 621, 960, 1089
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 3 cut(s) 173, 227, 284
HapII CCGG 5 cut(s) 69, 145, 190, 285, 1194
HhaI GCGC 3 cut(s) 68, 113, 136
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 3 cut(s) 410, 900, 1154
Hin6I GCGC 3 cut(s) 66, 111, 134
HinP1I GCGC 3 cut(s) 66, 111, 134
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 3 cut(s) 687, 971, 1316
HpaII CCGG 5 cut(s) 69, 145, 190, 285, 1194
HphI GGTGA 3 cut(s) 834, 933, 935
Hpy166II GTNNAC 4 cut(s) 16, 91, 671, 833
Hpy188III TCNNGA 4 cut(s) 139, 235, 503, 1040
Hpy8I GTNNAC 4 cut(s) 16, 91, 671, 833
Hpy99I CGWCG 2 cut(s) 25, 185
HpyAV CCTTC 3 cut(s) 730, 898, 1024
HpyCH4III ACNGT 4 cut(s) 372, 513, 694, 1026
HpyCH4V TGCA 9 cut(s) 36, 129, 490, 620, 707, 785, 962, 1088, 1243
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
HpyF3I CTNAG 1 cut(s) 846
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 3 cut(s) 410, 900, 1154
HspAI GCGC 3 cut(s) 66, 111, 134
KasI GGCGCC 1 cut(s) 65
Kzo9I GATC 5 cut(s) 333, 363, 526, 746, 1262
LmnI GCTCC 3 cut(s) 49, 186, 758
Lsp1109I GCAGC 6 cut(s) 20, 474, 502, 632, 946, 1100
LweI GCATC 6 cut(s) 138, 258, 607, 694, 1033, 1056
MaeI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
MaeIII GTNAC 1 cut(s) 235
MalI GATC 5 cut(s) 335, 365, 528, 748, 1264
MboI GATC 5 cut(s) 333, 363, 526, 746, 1262
MboII GAAGA 2 cut(s) 403, 746
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 3 cut(s) 54, 63, 180
MluCI AATT 8 cut(s) 209, 556, 569, 581, 711, 851, 963, 1167
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 1310
MmeI TCCRAC 2 cut(s) 226, 676
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 2 cut(s) 1337, 1351
MslI CAYNNNNRTG 2 cut(s) 895, 1064
MspI CCGG 5 cut(s) 69, 145, 190, 285, 1194
MspR9I CCNGG 3 cut(s) 191, 286, 444
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 2 cut(s) 134, 140
MwoI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 2 cut(s) 191, 286
NdeII GATC 5 cut(s) 333, 363, 526, 746, 1262
NlaIII CATG 3 cut(s) 410, 900, 1154
NlaIV GGNNCC 3 cut(s) 67, 188, 380
NmeAIII GCCGAG 4 cut(s) 33, 42, 199, 253
NmuCI GTSAC 1 cut(s) 235
NruI TCGCGA 1 cut(s) 140
NspI RCATGY 1 cut(s) 900
NspV TTCGAA 1 cut(s) 1207
PaeR7I CTCGAG 1 cut(s) 879
PciI ACATGT 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 687, 971
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 6 cut(s) 35, 489, 492, 622, 961, 1090
PleI GAGTC 1 cut(s) 1310
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 1310
PscI ACATGT 1 cut(s) 896
PshAI GACNNNNGTC 1 cut(s) 1320
Psp124BI GAGCTC 2 cut(s) 54, 63
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 67, 188, 380
PspPI GGNCC 4 cut(s) 147, 171, 379, 1196
PspXI VCTCGAGB 1 cut(s) 879
PstI CTGCAG 2 cut(s) 492, 1090
PsuI RGATCY 1 cut(s) 746
RruI TCGCGA 1 cut(s) 140
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 2 cut(s) 895, 1064
Rsr2I CGGWCCG 1 cut(s) 147
RsrII CGGWCCG 1 cut(s) 147
SacI GAGCTC 2 cut(s) 54, 63
SaqAI TTAA 2 cut(s) 1337, 1351
SatI GCNGC 6 cut(s) 34, 488, 491, 621, 960, 1089
Sau3AI GATC 5 cut(s) 333, 363, 526, 746, 1262
Sau96I GGNCC 4 cut(s) 147, 171, 379, 1196
SchI GAGTC 1 cut(s) 1310
ScrFI CCNGG 3 cut(s) 191, 286, 444
SduI GDGCHC 3 cut(s) 54, 63, 180
SfaNI GCATC 6 cut(s) 138, 258, 607, 694, 1033, 1056
SfcI CTRYAG 2 cut(s) 488, 1086
SfoI GGCGCC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 879
SfuI TTCGAA 1 cut(s) 1207
SinI GGWCC 3 cut(s) 147, 379, 1196
SlaI CTCGAG 1 cut(s) 879
SmiMI CAYNNNNRTG 2 cut(s) 895, 1064
SmlI CTYRAG 2 cut(s) 879, 1002
SmoI CTYRAG 2 cut(s) 879, 1002
Sse9I AATT 8 cut(s) 209, 556, 569, 581, 711, 851, 963, 1167
SsiI CCGC 3 cut(s) 10, 271, 644
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
SstI GAGCTC 2 cut(s) 54, 63
StyD4I CCNGG 3 cut(s) 189, 284, 442
StyI CCWWGG 1 cut(s) 1199
TaaI ACNGT 4 cut(s) 372, 513, 694, 1026
TaqI TCGA 5 cut(s) 117, 529, 880, 1207, 1342
TasI AATT 8 cut(s) 209, 556, 569, 581, 711, 851, 963, 1167
TfiI GAWTC 2 cut(s) 687, 971
Tru1I TTAA 2 cut(s) 1337, 1351
Tru9I TTAA 2 cut(s) 1337, 1351
TscAI CASTG 6 cut(s) 131, 500, 634, 654, 697, 1090
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 6 cut(s) 33, 487, 490, 620, 959, 1088
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 1125, 1139
TspGWI ACGGA 3 cut(s) 38, 139, 1076
TspRI CASTG 6 cut(s) 131, 500, 634, 654, 697, 1090
VpaK11BI GGWCC 3 cut(s) 147, 379, 1196
XagI CCTNNNNNAGG 1 cut(s) 1161
XapI RAATTY 1 cut(s) 556
XceI RCATGY 1 cut(s) 900
XhoI CTCGAG 1 cut(s) 879
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.