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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15550 |
| fragaria_vesca | FvH4_6g30700 FvH4_6g30700 |
| malus_domestica | MD17G1201400.v1.1 |
| prunus_persica | Prupe.3G077300_v2.0.a1 |
| pyrus_communis | pycom17g20530 |
| rosa_chinensis | RchiOBHm_Chr2g0137071 |
| rosa_laevigata | RLG00000019604 |
| rosa_multiflora | Rmu_sc0001374.1_g000024 |
| rosa_roxburghii | Rroxscaffold_2G00107700 |
| rosa_rugosa | Rorug02G0337700 Rorug02G0337800 |
| rosa_samantha | Rh2AG386900 Rh2BG393700 Rh2CG374200 Rh2DG409800 |
| rosa_wichuraiana | Rw2G031660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 772 |
| AatII | GACGTC | 1 cut(s) | 1361 |
| Acc36I | ACCTGC | 1 cut(s) | 772 |
| AccB1I | GGYRCC | 1 cut(s) | 1594 |
| AccI | GTMKAC | 1 cut(s) | 613 |
| AccII | CGCG | 1 cut(s) | 87 |
| AclI | AACGTT | 1 cut(s) | 1647 |
| AclWI | GGATC | 8 cut(s) | 197, 284, 305, 498, 704, 732, 1060, 1688 |
| AcsI | RAATTY | 1 cut(s) | 2183 |
| AcuI | CTGAAG | 3 cut(s) | 131, 666, 1555 |
| AcyI | GRCGYC | 1 cut(s) | 1358 |
| AfaI | GTAC | 3 cut(s) | 411, 480, 1383 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2025 |
| AgeI | ACCGGT | 1 cut(s) | 1519 |
| AjnI | CCWGG | 2 cut(s) | 1119, 1339 |
| AleI | CACNNNNGTG | 1 cut(s) | 1086 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1745, 1777 |
| Alw26I | GTCTC | 9 cut(s) | 208, 251, 797, 856, 1308, 1349, 1497, 1877, 1977 |
| AlwI | GGATC | 8 cut(s) | 197, 284, 305, 498, 704, 732, 1060, 1688 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1415 |
| Ama87I | CYCGRG | 1 cut(s) | 1055 |
| ApeKI | GCWGC | 6 cut(s) | 536, 686, 845, 1124, 1406, 1409 |
| ApoI | RAATTY | 1 cut(s) | 2183 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 2163 |
| AsiGI | ACCGGT | 1 cut(s) | 1519 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 518, 2141 |
| AspLEI | GCGC | 3 cut(s) | 880, 1138, 1159 |
| AspS9I | GGNCC | 2 cut(s) | 116, 1753 |
| AsuC2I | CCSGG | 1 cut(s) | 869 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 2005 |
| AvaI | CYCGRG | 1 cut(s) | 1055 |
| AvaII | GGWCC | 2 cut(s) | 116, 1753 |
| AxyI | CCTNAGG | 1 cut(s) | 422 |
| BanI | GGYRCC | 1 cut(s) | 1594 |
| BbsI | GAAGAC | 2 cut(s) | 1475, 2145 |
| BbvI | GCAGC | 6 cut(s) | 523, 673, 832, 1111, 1418, 1421 |
| BccI | CCATC | 3 cut(s) | 1169, 2041, 2050 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 77, 111 |
| BciT130I | CCWGG | 2 cut(s) | 1121, 1341 |
| BclI | TGATCA | 1 cut(s) | 373 |
| BcnI | CCSGG | 1 cut(s) | 869 |
| BcoDI | GTCTC | 9 cut(s) | 208, 251, 797, 856, 1308, 1349, 1497, 1877, 1977 |
| BfaI | CTAG | 8 cut(s) | 63, 272, 543, 971, 1232, 1304, 2013, 2188 |
| BfmI | CTRYAG | 1 cut(s) | 687 |
| BfuAI | ACCTGC | 1 cut(s) | 772 |
| BglII | AGATCT | 3 cut(s) | 31, 78, 234 |
| BisI | GCNGC | 6 cut(s) | 537, 687, 846, 1125, 1407, 1410 |
| BlsI | GCNGC | 6 cut(s) | 538, 688, 847, 1126, 1408, 1411 |
| Bme1390I | CCNGG | 3 cut(s) | 869, 1121, 1341 |
| Bme18I | GGWCC | 2 cut(s) | 116, 1753 |
| BmeT110I | CYCGRG | 1 cut(s) | 1055 |
| BmgT120I | GGNCC | 2 cut(s) | 116, 1753 |
| BmiI | GGNNCC | 2 cut(s) | 383, 1596 |
| BmrFI | CCNGG | 3 cut(s) | 869, 1121, 1341 |
| BmsI | GCATC | 4 cut(s) | 85, 158, 1063, 2088 |
| BpiI | GAAGAC | 2 cut(s) | 1475, 2145 |
| BpmI | CTGGAG | 4 cut(s) | 792, 1244, 1458, 1694 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1815, 1878 |
| BpuEI | CTTGAG | 5 cut(s) | 36, 184, 376, 488, 754 |
| BpuMI | CCSGG | 1 cut(s) | 869 |
| Bsa29I | ATCGAT | 1 cut(s) | 527 |
| BsaBI | GATNNNNATC | 1 cut(s) | 750 |
| BsaHI | GRCGYC | 1 cut(s) | 1358 |
| BsaI | GGTCTC | 1 cut(s) | 208 |
| BsaJI | CCNNGG | 1 cut(s) | 482 |
| BsaWI | WCCGGW | 1 cut(s) | 1519 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2025 |
| Bse118I | RCCGGY | 1 cut(s) | 1519 |
| Bse1I | ACTGG | 4 cut(s) | 194, 1677, 1755, 2093 |
| Bse21I | CCTNAGG | 1 cut(s) | 422 |
| Bse3DI | GCAATG | 1 cut(s) | 440 |
| Bse8I | GATNNNNATC | 1 cut(s) | 750 |
| BseBI | CCWGG | 2 cut(s) | 1121, 1341 |
| BseCI | ATCGAT | 1 cut(s) | 527 |
| BseDI | CCNNGG | 1 cut(s) | 482 |
| BseGI | GGATG | 1 cut(s) | 916 |
| BseJI | GATNNNNATC | 1 cut(s) | 750 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2025 |
| BseMI | GCAATG | 1 cut(s) | 440 |
| BseMII | CTCAG | 6 cut(s) | 256, 851, 1233, 1407, 1476, 1590 |
| BseNI | ACTGG | 4 cut(s) | 194, 1677, 1755, 2093 |
| BseRI | GAGGAG | 6 cut(s) | 345, 411, 574, 1232, 1463, 1466 |
| BseXI | GCAGC | 6 cut(s) | 523, 673, 832, 1111, 1418, 1421 |
| BsgI | GTGCAG | 1 cut(s) | 1033 |
| Bsh1236I | CGCG | 1 cut(s) | 87 |
| BshNI | GGYRCC | 1 cut(s) | 1594 |
| BshTI | ACCGGT | 1 cut(s) | 1519 |
| BshVI | ATCGAT | 1 cut(s) | 527 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1055 |
| BsiSI | CCGG | 2 cut(s) | 868, 1520 |
| BslFI | GGGAC | 1 cut(s) | 866 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2025 |
| BsmAI | GTCTC | 9 cut(s) | 208, 251, 797, 856, 1308, 1349, 1497, 1877, 1977 |
| BsmBI | CGTCTC | 1 cut(s) | 1349 |
| BsmFI | GGGAC | 1 cut(s) | 866 |
| BsmI | GAATGC | 1 cut(s) | 1577 |
| Bso31I | GGTCTC | 1 cut(s) | 208 |
| BsoBI | CYCGRG | 1 cut(s) | 1055 |
| Bsp19I | CCATGG | 1 cut(s) | 482 |
| Bsp68I | TCGCGA | 1 cut(s) | 87 |
| BspCNI | CTCAG | 6 cut(s) | 255, 852, 1234, 1408, 1477, 1591 |
| BspDI | ATCGAT | 1 cut(s) | 527 |
| BspFNI | CGCG | 1 cut(s) | 87 |
| BspLI | GGNNCC | 2 cut(s) | 383, 1596 |
| BspMAI | CTGCAG | 1 cut(s) | 691 |
| BspMI | ACCTGC | 1 cut(s) | 772 |
| BspPI | GGATC | 8 cut(s) | 197, 284, 305, 498, 704, 732, 1060, 1688 |
| BspQI | GCTCTTC | 1 cut(s) | 1389 |
| BspT107I | GGYRCC | 1 cut(s) | 1594 |
| BspTNI | GGTCTC | 1 cut(s) | 208 |
| BsrDI | GCAATG | 1 cut(s) | 440 |
| BsrFI | RCCGGY | 1 cut(s) | 1519 |
| BsrI | ACTGG | 4 cut(s) | 194, 1677, 1755, 2093 |
| BssAI | RCCGGY | 1 cut(s) | 1519 |
| BssECI | CCNNGG | 1 cut(s) | 482 |
| BssNAI | GTATAC | 1 cut(s) | 614 |
| BssNI | GRCGYC | 1 cut(s) | 1358 |
| BssT1I | CCWWGG | 1 cut(s) | 482 |
| Bst1107I | GTATAC | 1 cut(s) | 614 |
| Bst2UI | CCWGG | 2 cut(s) | 1121, 1341 |
| Bst4CI | ACNGT | 2 cut(s) | 409, 611 |
| BstACI | GRCGYC | 1 cut(s) | 1358 |
| BstC8I | GCNNGC | 5 cut(s) | 441, 445, 678, 1812, 1875 |
| BstDSI | CCRYGG | 1 cut(s) | 482 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2023 |
| BstF5I | GGATG | 1 cut(s) | 916 |
| BstFNI | CGCG | 1 cut(s) | 87 |
| BstHHI | GCGC | 3 cut(s) | 880, 1138, 1159 |
| BstMAI | GTCTC | 9 cut(s) | 208, 251, 797, 856, 1308, 1349, 1497, 1877, 1977 |
| BstNI | CCWGG | 2 cut(s) | 1121, 1341 |
| BstSCI | CCNGG | 3 cut(s) | 867, 1119, 1339 |
| BstSFI | CTRYAG | 1 cut(s) | 687 |
| BstUI | CGCG | 1 cut(s) | 87 |
| BstV1I | GCAGC | 6 cut(s) | 523, 673, 832, 1111, 1418, 1421 |
| BstV2I | GAAGAC | 2 cut(s) | 1475, 2145 |
| BstX2I | RGATCY | 6 cut(s) | 31, 78, 234, 490, 709, 737 |
| BstYI | RGATCY | 6 cut(s) | 31, 78, 234, 490, 709, 737 |
| BstZ17I | GTATAC | 1 cut(s) | 614 |
| Bsu15I | ATCGAT | 1 cut(s) | 527 |
| Bsu36I | CCTNAGG | 1 cut(s) | 422 |
| BsuTUI | ATCGAT | 1 cut(s) | 527 |
| BtgI | CCRYGG | 1 cut(s) | 482 |
| BtsCI | GGATG | 1 cut(s) | 916 |
| BtsIMutI | CAGTG | 3 cut(s) | 201, 857, 2100 |
| BtuMI | TCGCGA | 1 cut(s) | 87 |
| BveI | ACCTGC | 1 cut(s) | 772 |
| Cac8I | GCNNGC | 5 cut(s) | 441, 445, 678, 1812, 1875 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1415 |
| CfoI | GCGC | 3 cut(s) | 880, 1138, 1159 |
| Cfr10I | RCCGGY | 1 cut(s) | 1519 |
| Cfr13I | GGNCC | 2 cut(s) | 116, 1753 |
| ClaI | ATCGAT | 1 cut(s) | 527 |
| Csp6I | GTAC | 3 cut(s) | 410, 479, 1382 |
| CspAI | ACCGGT | 1 cut(s) | 1519 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1887, 1922 |
| CviAII | CATG | 3 cut(s) | 133, 483, 1583 |
| CviQI | GTAC | 3 cut(s) | 410, 479, 1382 |
| DraI | TTTAAA | 2 cut(s) | 1207, 1956 |
| Eco130I | CCWWGG | 1 cut(s) | 482 |
| Eco31I | GGTCTC | 1 cut(s) | 208 |
| Eco47I | GGWCC | 2 cut(s) | 116, 1753 |
| Eco57I | CTGAAG | 3 cut(s) | 131, 666, 1555 |
| Eco81I | CCTNAGG | 1 cut(s) | 422 |
| Eco88I | CYCGRG | 1 cut(s) | 1055 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2023 |
| EcoRII | CCWGG | 2 cut(s) | 1119, 1339 |
| EcoT14I | CCWWGG | 1 cut(s) | 482 |
| ErhI | CCWWGG | 1 cut(s) | 482 |
| Esp3I | CGTCTC | 1 cut(s) | 1349 |
| FaeI | CATG | 3 cut(s) | 136, 486, 1586 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 697, 729, 939, 971, 2126, 2158 |
| FaqI | GGGAC | 1 cut(s) | 866 |
| FatI | CATG | 3 cut(s) | 132, 482, 1582 |
| FauNDI | CATATG | 1 cut(s) | 316 |
| FbaI | TGATCA | 1 cut(s) | 373 |
| FblI | GTMKAC | 1 cut(s) | 613 |
| Fnu4HI | GCNGC | 6 cut(s) | 537, 687, 846, 1125, 1407, 1410 |
| FokI | GGATG | 1 cut(s) | 923 |
| Fsp4HI | GCNGC | 6 cut(s) | 537, 687, 846, 1125, 1407, 1410 |
| FspBI | CTAG | 8 cut(s) | 63, 272, 543, 971, 1232, 1304, 2013, 2188 |
| GlaI | GCGC | 3 cut(s) | 879, 1137, 1158 |
| GluI | GCNGC | 6 cut(s) | 537, 687, 846, 1125, 1407, 1410 |
| GsuI | CTGGAG | 4 cut(s) | 792, 1244, 1458, 1694 |
| HapII | CCGG | 2 cut(s) | 868, 1520 |
| HhaI | GCGC | 3 cut(s) | 880, 1138, 1159 |
| Hin1I | GRCGYC | 1 cut(s) | 1358 |
| Hin1II | CATG | 3 cut(s) | 136, 486, 1586 |
| Hin6I | GCGC | 3 cut(s) | 878, 1136, 1157 |
| HinP1I | GCGC | 3 cut(s) | 878, 1136, 1157 |
| HindIII | AAGCTT | 2 cut(s) | 464, 1567 |
| HpaII | CCGG | 2 cut(s) | 868, 1520 |
| HphI | GGTGA | 2 cut(s) | 49, 2005 |
| Hpy166II | GTNNAC | 3 cut(s) | 331, 614, 1861 |
| Hpy188I | TCNGA | 9 cut(s) | 186, 207, 306, 550, 1183, 1417, 1486, 1574, 2005 |
| Hpy8I | GTNNAC | 3 cut(s) | 331, 614, 1861 |
| Hpy99I | CGWCG | 2 cut(s) | 1363, 2114 |
| HpyAV | CCTTC | 5 cut(s) | 451, 581, 732, 993, 2029 |
| HpyCH4III | ACNGT | 2 cut(s) | 409, 611 |
| HpyCH4IV | ACGT | 2 cut(s) | 1358, 1647 |
| HpySE526I | ACGT | 2 cut(s) | 1358, 1647 |
| Hsp92I | GRCGYC | 1 cut(s) | 1358 |
| Hsp92II | CATG | 3 cut(s) | 136, 486, 1586 |
| HspAI | GCGC | 3 cut(s) | 878, 1136, 1157 |
| Ksp22I | TGATCA | 1 cut(s) | 373 |
| LguI | GCTCTTC | 1 cut(s) | 1389 |
| LmnI | GCTCC | 2 cut(s) | 967, 1219 |
| Lsp1109I | GCAGC | 6 cut(s) | 523, 673, 832, 1111, 1418, 1421 |
| LweI | GCATC | 4 cut(s) | 85, 158, 1063, 2088 |
| MaeI | CTAG | 8 cut(s) | 63, 272, 543, 971, 1232, 1304, 2013, 2188 |
| MaeII | ACGT | 2 cut(s) | 1358, 1647 |
| MaeIII | GTNAC | 1 cut(s) | 1362 |
| MflI | RGATCY | 6 cut(s) | 31, 78, 234, 490, 709, 737 |
| MluCI | AATT | 2 cut(s) | 1425, 2183 |
| MlyI | GAGTC | 3 cut(s) | 799, 848, 1465 |
| MmeI | TCCRAC | 2 cut(s) | 888, 1485 |
| MroXI | GAANNNNTTC | 2 cut(s) | 518, 2141 |
| MslI | CAYNNNNRTG | 2 cut(s) | 131, 1086 |
| MspA1I | CMGCKG | 2 cut(s) | 296, 686 |
| MspI | CCGG | 2 cut(s) | 868, 1520 |
| MspR9I | CCNGG | 3 cut(s) | 869, 1121, 1341 |
| Mva1269I | GAATGC | 1 cut(s) | 1577 |
| MvaI | CCWGG | 2 cut(s) | 1121, 1341 |
| MvnI | CGCG | 1 cut(s) | 87 |
| NciI | CCSGG | 1 cut(s) | 869 |
| NcoI | CCATGG | 1 cut(s) | 482 |
| NdeI | CATATG | 1 cut(s) | 316 |
| NlaIII | CATG | 3 cut(s) | 136, 486, 1586 |
| NlaIV | GGNNCC | 2 cut(s) | 383, 1596 |
| NmeAIII | GCCGAG | 1 cut(s) | 919 |
| NmuCI | GTSAC | 1 cut(s) | 1362 |
| NruI | TCGCGA | 1 cut(s) | 87 |
| OliI | CACNNNNGTG | 1 cut(s) | 1086 |
| PaeR7I | CTCGAG | 1 cut(s) | 1055 |
| PaqCI | CACCTGC | 1 cut(s) | 772 |
| PciSI | GCTCTTC | 1 cut(s) | 1389 |
| PctI | GAATGC | 1 cut(s) | 1577 |
| PdmI | GAANNNNTTC | 2 cut(s) | 518, 2141 |
| PfeI | GAWTC | 7 cut(s) | 344, 514, 626, 656, 1028, 1228, 2029 |
| PflFI | GACNNNGTC | 1 cut(s) | 1360 |
| PfoI | TCCNGGA | 1 cut(s) | 1339 |
| PinAI | ACCGGT | 1 cut(s) | 1519 |
| PkrI | GCNGC | 6 cut(s) | 538, 688, 847, 1126, 1408, 1411 |
| PleI | GAGTC | 3 cut(s) | 799, 848, 1465 |
| PpsI | GAGTC | 3 cut(s) | 799, 848, 1465 |
| Psp1406I | AACGTT | 1 cut(s) | 1647 |
| Psp6I | CCWGG | 2 cut(s) | 1119, 1339 |
| PspGI | CCWGG | 2 cut(s) | 1119, 1339 |
| PspN4I | GGNNCC | 2 cut(s) | 383, 1596 |
| PspPI | GGNCC | 2 cut(s) | 116, 1753 |
| PstI | CTGCAG | 1 cut(s) | 691 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1415 |
| PsuI | RGATCY | 6 cut(s) | 31, 78, 234, 490, 709, 737 |
| PsyI | GACNNNGTC | 1 cut(s) | 1360 |
| PvuII | CAGCTG | 2 cut(s) | 296, 686 |
| RruI | TCGCGA | 1 cut(s) | 87 |
| RsaI | GTAC | 3 cut(s) | 411, 480, 1383 |
| RsaNI | GTAC | 3 cut(s) | 410, 479, 1382 |
| RseI | CAYNNNNRTG | 2 cut(s) | 131, 1086 |
| SapI | GCTCTTC | 1 cut(s) | 1389 |
| SatI | GCNGC | 6 cut(s) | 537, 687, 846, 1125, 1407, 1410 |
| Sau96I | GGNCC | 2 cut(s) | 116, 1753 |
| SchI | GAGTC | 3 cut(s) | 799, 848, 1465 |
| ScrFI | CCNGG | 3 cut(s) | 869, 1121, 1341 |
| SfaNI | GCATC | 4 cut(s) | 85, 158, 1063, 2088 |
| SfcI | CTRYAG | 1 cut(s) | 687 |
| Sfr274I | CTCGAG | 1 cut(s) | 1055 |
| SinI | GGWCC | 2 cut(s) | 116, 1753 |
| SlaI | CTCGAG | 1 cut(s) | 1055 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 131, 1086 |
| SmlI | CTYRAG | 6 cut(s) | 51, 163, 391, 467, 733, 1055 |
| SmoI | CTYRAG | 6 cut(s) | 51, 163, 391, 467, 733, 1055 |
| Sse9I | AATT | 2 cut(s) | 1425, 2183 |
| SspMI | CTAG | 8 cut(s) | 63, 272, 543, 971, 1232, 1304, 2013, 2188 |
| StyD4I | CCNGG | 3 cut(s) | 867, 1119, 1339 |
| StyI | CCWWGG | 1 cut(s) | 482 |
| TaaI | ACNGT | 2 cut(s) | 409, 611 |
| TaiI | ACGT | 2 cut(s) | 1361, 1650 |
| TaqI | TCGA | 3 cut(s) | 42, 527, 1056 |
| TasI | AATT | 2 cut(s) | 1425, 2183 |
| TfiI | GAWTC | 7 cut(s) | 344, 514, 626, 656, 1028, 1228, 2029 |
| TscAI | CASTG | 3 cut(s) | 201, 864, 2100 |
| TseFI | GTSAC | 1 cut(s) | 1362 |
| TseI | GCWGC | 6 cut(s) | 536, 686, 845, 1124, 1406, 1409 |
| Tsp45I | GTSAC | 1 cut(s) | 1362 |
| TspGWI | ACGGA | 3 cut(s) | 38, 816, 1058 |
| TspRI | CASTG | 3 cut(s) | 201, 864, 2100 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1360 |
| VpaK11BI | GGWCC | 2 cut(s) | 116, 1753 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2023 |
| XapI | RAATTY | 1 cut(s) | 2183 |
| XhoI | CTCGAG | 1 cut(s) | 1055 |
| XmiI | GTMKAC | 1 cut(s) | 613 |
| XmnI | GAANNNNTTC | 2 cut(s) | 518, 2141 |
| XspI | CTAG | 8 cut(s) | 63, 272, 543, 971, 1232, 1304, 2013, 2188 |
| ZraI | GACGTC | 1 cut(s) | 1359 |