Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014126

Physical Location & Seq

Genomic Coordinates Reverse (-)

41942219 .. 41945192

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0337700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTGAAGACGGCTTCATCAATCCCGCTTCTCATTCTTCTCCTCCTCACATTCGCAATCGCCATGGCCGACTCTTCTTCTTCCTCTGCTCCCCTCAATTCGGAATCCGCTGTCCACATCGTTTACACCGAGAAGCCGCAGCAAAATGAGGAGCCTGAGGCCTATCACATCCGAACCCTAGCCTCCGTCCTCGGCAGTGAGGAGGCTGCAAAGGACGCTCTGGTTTACAGTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCCTCAGCAGGTCGCCGAAATCTCGAAACAACCTGGGGTTCTTCAGGTCGTACCAAGCAGGACACTCCAACTGCATTCAGGAGCTGGGATTGGGAAGCTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009451 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

124

Amino Acids

13.1

Weight (kDa)

6.4

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	39 - 115	3.3e-17	Peptidase inhibitor I9
MORF_dom	PF21864	43 - 113	5e-09	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15550
fragaria_vesca	FvH4_6g30700 FvH4_6g30700
malus_domestica	MD17G1201400.v1.1
prunus_persica	Prupe.3G077300_v2.0.a1
pyrus_communis	pycom17g20530
rosa_chinensis	RchiOBHm_Chr2g0137071
rosa_laevigata	RLG00000019604
rosa_multiflora	Rmu_sc0001374.1_g000024
rosa_roxburghii	Rroxscaffold_2G00107700
rosa_rugosa	Rorug02G0337700 Rorug02G0337800
rosa_samantha	Rh2AG386900 Rh2BG393700 Rh2CG374200 Rh2DG409800
rosa_wichuraiana	Rw2G031660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AciI	CCGC	3 cut(s)	26, 108, 137
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	265, 353, 367
AluI	AGCT	3 cut(s)	265, 353, 367
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	66, 159
ApeKI	GCWGC	4 cut(s)	139, 206, 242, 367
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	151, 193, 229, 354
BceAI	ACGGC	2 cut(s)	27, 255
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	5 cut(s)	137, 140, 207, 243, 368
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	5 cut(s)	138, 141, 208, 244, 369
Bme1390I	CCNGG	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	63, 190, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	63, 190, 302
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	147, 287
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	5 cut(s)	32, 35, 164, 215, 261
BseXI	GCAGC	4 cut(s)	151, 193, 229, 354
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	2 cut(s)	68, 161
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	68, 161
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	3 cut(s)	26, 108, 137
BspANI	GGCC	2 cut(s)	68, 161
BspCNI	CTCAG	2 cut(s)	148, 286
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	63, 190, 302
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	79
BstDEI	CTNAG	3 cut(s)	156, 261, 273
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	4 cut(s)	151, 193, 229, 354
BstV2I	GAAGAC	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	68, 161
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	202, 253
BveI	ACCTGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	353
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	156, 261, 273
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	296
Eco81I	CCTNAGG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	67
FaiI	YATR	1 cut(s)	65
FatI	CATG	1 cut(s)	63
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	137, 140, 207, 243, 368
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	5 cut(s)	137, 140, 207, 243, 368
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	5 cut(s)	137, 140, 207, 243, 368
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	68, 161
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	3 cut(s)	71, 104, 252
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	115, 124, 226
Hpy188I	TCNGA	2 cut(s)	103, 173
Hpy188III	TCNNGA	2 cut(s)	292, 348
Hpy8I	GTNNAC	3 cut(s)	115, 124, 226
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	3 cut(s)	209, 343, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	156, 261, 273
Hsp92II	CATG	1 cut(s)	67
LmnI	GCTCC	3 cut(s)	94, 151, 350
Lsp1109I	GCAGC	4 cut(s)	151, 193, 229, 354
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	230
MboII	GAAGA	6 cut(s)	19, 29, 66, 69, 72, 302
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	63
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	153
NmeAIII	GCCGAG	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 126
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	104, 252
PkrI	GCNGC	5 cut(s)	138, 141, 208, 244, 369
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SatI	GCNGC	5 cut(s)	137, 140, 207, 243, 368
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	6 cut(s)	267, 282, 304, 318, 355, 369
Sse9I	AATT	1 cut(s)	97
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	26, 108, 137
SspMI	CTAG	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	97
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	104, 252
TscAI	CASTG	2 cut(s)	202, 253
TseI	GCWGC	4 cut(s)	139, 206, 242, 367
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	202, 253
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.