Rorug02G0337800
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014126
Physical Location & Seq
Reverse (-)
41981648 .. 41985301
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0337800.1

Sequence Viewer

Length: 1461 bp
ATGGATTACAGTAACCTTTATATTTTCTTGTCTACACTACTTGCCATCTTCACTACTACTACTCTGGCATTCCTTTTTTCTAAGCATAAGTCAAAATCCCATGAAAAATCCATTAATCTTCCCCCAGGCAGTTTTGGGTGGCCGATTATCGGCGAAACCTATGCCTTCCTACACAATGACCATGAAAAATTTATAGGGGATAGAATGAAGAAATACTCCTCCAAAATCTTCAAAACCAAGATACTAGGTGAGCGAACAGTGGTGTTATGTGGCACTGCCGGTCACAAATTTGTGGCTTCCAACGAAGAAAAGCTCTTTGCAGCATGGAGACCTCACTCAATGCAAAAGCTCTTCCGTTCTTCATACCAAAAAGCTGCTTCCATCATCATGCCAAAACAAATGGAAAAGCACGTATCTCAGGCACCAGGGTTTCTGAGAGCCGAAGCCCTGGTTGGCTACGTTGCAGCGATGGATTCCATGGTTCTCGACCACCTGAAAGTGCACTGGGATGGCAAACAGGTGGTCGAGGCTCATCACCTCACGCAGCTACTCGTTTTGACTCTCTCGGCCAAGTCATTCATGGGACTCGAAGACCATTGTCGTATTGATAAGCTTGCGAAGTTGATGGACACCATGATGCCGGCGCTTCACACTATTCCTGTGAATATTCCGGGGACTGCATTTCATCGAGCAATGAAAGCAGTGCCGGCTGCGAGGGAGATTATTCAGTCGTTTGTTAAGGAGAAGAAAGAAGTTATGGCGTCTACCGGAAACAAAATGCATGATTTTTTGTCTTATATGATTGCTACGGCAGACCCGGTTACCGGAAGGTTCATGCCGGATAATGAAATTGCTGACAAAATCATGGGGATTGTGGCCGCTTCCTTCAACTCTCCAGCTATGACTACTACTTTTATCGTGAAGTTCCTGGGCGAAAGACCTGACATTTATGACAAAGTCCGAGTTGAGCAAATGGAGATTTTGAAGGCCAAAAAATTTGGCGAGGCACTCAATTGGGATGATTTGCAAAAAATGAAGTATTCGTGGAACGTAGCCCTGGAGGCGATGAGGCTCATACCACCTCTTCAGGGAACATTTAGAGAGGCTGCAAAGGACTTCACTTACGAAGGTTATACAATTCCTAAAGGATGGAAGGTCTACTGGACAGTGAGCACCACAACCATGAACCCTGAATATTTTCCAGCGCCAGAAGAATTTGATCCTACAAGGTTCGAGAAAGCAACTCCTCCGCCTTACACAAACATCCCATTCGGGAGCGGTCCTCGCATTTGCCCCGGAAAGGACTACGCTCGGCTGCAAATTCTTAGCTTTATGCACCATCTTGTTATAAGATTCAAATGGGAACTTGTGAACCCTAATTGCAGGATCACAGGTGGTATGAATCCCTTTCCAGTTGATGGGCTGAAGGTTCGCCTCCAAGCTCAACCCAGTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

486

Amino Acids

55.12

Weight (kDa)

9.3

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 41 - 458 5.4e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15550
fragaria_vesca FvH4_6g30700 FvH4_6g30700
malus_domestica MD17G1201400.v1.1
prunus_persica Prupe.3G077300_v2.0.a1
pyrus_communis pycom17g20530
rosa_chinensis RchiOBHm_Chr2g0137071
rosa_laevigata RLG00000019604
rosa_multiflora Rmu_sc0001374.1_g000024
rosa_roxburghii Rroxscaffold_2G00107700
rosa_rugosa Rorug02G0337700 Rorug02G0337800
rosa_samantha Rh2AG386900 Rh2BG393700 Rh2CG374200 Rh2DG409800
rosa_wichuraiana Rw2G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1349
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 1418
AccBSI CCGCTC 1 cut(s) 1278
AccI GTMKAC 3 cut(s) 32, 764, 1158
AciI CCGC 3 cut(s) 879, 1250, 1278
AclWI GGATC 2 cut(s) 1214, 1394
AcoI YGGCCR 3 cut(s) 140, 567, 876
AcsI RAATTY 5 cut(s) 188, 287, 995, 1214, 1320
AcuI CTGAAG 2 cut(s) 1070, 1445
AcyI GRCGYC 1 cut(s) 761
AfiI CCNNNNNNNGG 5 cut(s) 149, 824, 1088, 1300, 1418
AgsI TTSAA 4 cut(s) 232, 889, 985, 1357
AjnI CCWGG 5 cut(s) 124, 424, 447, 927, 1056
AjuI GAANNNNNNNTTGG 2 cut(s) 435, 467
AluBI AGCT 9 cut(s) 313, 349, 374, 547, 613, 899, 1329, 1442, 1457
AluI AGCT 9 cut(s) 313, 349, 374, 547, 613, 899, 1329, 1442, 1457
Alw21I GWGCWC 2 cut(s) 504, 1175
Alw26I GTCTC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 2 cut(s) 1214, 1394
AoxI GGCC 4 cut(s) 140, 567, 876, 987
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 7 cut(s) 320, 374, 464, 544, 710, 1106, 1315
ApoI RAATTY 5 cut(s) 188, 287, 995, 1214, 1320
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
AseI ATTAAT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 1197
AspLEI GCGC 2 cut(s) 646, 1207
AspS9I GGNCC 1 cut(s) 1280
AsuC2I CCSGG 3 cut(s) 672, 818, 1296
AsuHPI GGTGA 2 cut(s) 260, 527
AvaII GGWCC 1 cut(s) 1280
BaeGI GKGCMC 1 cut(s) 504
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 2 cut(s) 504, 1175
BbvI GCAGC 7 cut(s) 332, 361, 476, 556, 697, 1093, 1302
BccI CCATC 8 cut(s) 53, 389, 463, 503, 619, 1143, 1347, 1412
BceAI ACGGC 1 cut(s) 825
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 5 cut(s) 126, 426, 449, 929, 1058
BcnI CCSGG 3 cut(s) 672, 818, 1296
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 245
BfoI RGCGCY 2 cut(s) 647, 1208
BglI GCCNNNNNGGC 1 cut(s) 1061
BisI GCNGC 8 cut(s) 321, 375, 465, 545, 711, 879, 1107, 1316
BlsI GCNGC 8 cut(s) 322, 376, 466, 546, 712, 880, 1108, 1317
Bme1390I CCNGG 8 cut(s) 126, 426, 449, 672, 818, 929, 1058, 1296
Bme18I GGWCC 1 cut(s) 1280
BmgT120I GGNCC 1 cut(s) 1280
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 8 cut(s) 126, 426, 449, 672, 818, 929, 1058, 1296
BmrI ACTGGG 2 cut(s) 514, 1443
BmsI GCATC 1 cut(s) 627
BmuI ACTGGG 2 cut(s) 514, 1443
BoxI GACNNNNGTC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 1267, 1299
BpmI CTGGAG 2 cut(s) 879, 1079
BpuMI CCSGG 3 cut(s) 672, 818, 1296
BsaAI YACGTR 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 761
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 8 cut(s) 124, 425, 447, 477, 671, 928, 1056, 1294
BsaWI WCCGGW 2 cut(s) 767, 824
Bsc4I CCNNNNNNNGG 5 cut(s) 149, 824, 1088, 1300, 1418
Bse118I RCCGGY 3 cut(s) 278, 640, 706
Bse1I ACTGG 4 cut(s) 509, 1166, 1412, 1449
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 5 cut(s) 126, 426, 449, 929, 1058
BseDI CCNNGG 8 cut(s) 124, 425, 447, 477, 671, 928, 1056, 1294
BseGI GGATG 4 cut(s) 514, 1024, 1154, 1263
BseLI CCNNNNNNNGG 5 cut(s) 149, 824, 1088, 1300, 1418
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 2 cut(s) 425, 431
BseNI ACTGG 4 cut(s) 509, 1166, 1412, 1449
BseRI GAGGAG 2 cut(s) 208, 1236
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 7 cut(s) 332, 361, 476, 556, 697, 1093, 1302
BshFI GGCC 4 cut(s) 142, 569, 878, 989
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 504, 1175
BsiSI CCGG 9 cut(s) 279, 641, 671, 707, 768, 818, 825, 839, 1296
BslFI GGGAC 2 cut(s) 597, 688
BslI CCNNNNNNNGG 5 cut(s) 149, 824, 1088, 1300, 1418
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 2 cut(s) 597, 688
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 4 cut(s) 142, 569, 878, 989
Bso31I GGTCTC 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 504, 1175
Bsp143I GATC 2 cut(s) 1219, 1386
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 3 cut(s) 879, 1250, 1278
BspANI GGCC 4 cut(s) 142, 569, 878, 989
BspCNI CTCAG 2 cut(s) 426, 430
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 2 cut(s) 1214, 1394
BspQI GCTCTTC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 1278
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 3 cut(s) 278, 640, 706
BsrI ACTGG 4 cut(s) 509, 1166, 1412, 1449
BssAI RCCGGY 3 cut(s) 278, 640, 706
BssECI CCNNGG 8 cut(s) 124, 425, 447, 477, 671, 928, 1056, 1294
BssMI GATC 2 cut(s) 1219, 1386
BssNI GRCGYC 1 cut(s) 761
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 5 cut(s) 126, 426, 449, 929, 1058
Bst4CI ACNGT 3 cut(s) 11, 259, 1168
Bst6I CTCTTC 2 cut(s) 356, 1089
BstACI GRCGYC 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 3 cut(s) 615, 642, 708
BstDEI CTNAG 4 cut(s) 81, 417, 434, 1325
BstDSI CCRYGG 1 cut(s) 477
BstEII GGTNACC 1 cut(s) 820
BstF5I GGATG 4 cut(s) 514, 1024, 1154, 1263
BstH2I RGCGCY 2 cut(s) 647, 1208
BstHHI GCGC 2 cut(s) 646, 1207
BstKTI GATC 2 cut(s) 1222, 1389
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 1219, 1386
BstMWI GCNNNNNNNGC 4 cut(s) 698, 707, 1061, 1284
BstNI CCWGG 5 cut(s) 126, 426, 449, 929, 1058
BstPAI GACNNNNGTC 1 cut(s) 597
BstPI GGTNACC 1 cut(s) 820
BstSCI CCNGG 8 cut(s) 124, 424, 447, 670, 816, 927, 1056, 1294
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 7 cut(s) 332, 361, 476, 556, 697, 1093, 1302
BstV2I GAAGAC 1 cut(s) 597
BsuRI GGCC 4 cut(s) 142, 569, 878, 989
BtgI CCRYGG 1 cut(s) 477
BtgZI GCGATG 2 cut(s) 482, 1079
BtsCI GGATG 4 cut(s) 514, 1024, 1154, 1263
BtsI GCAGTG 2 cut(s) 273, 708
BtsIMutI CAGTG 5 cut(s) 264, 273, 502, 708, 1173
Cac8I GCNNGC 3 cut(s) 615, 642, 708
CfoI GCGC 2 cut(s) 646, 1207
Cfr10I RCCGGY 3 cut(s) 278, 640, 706
Cfr13I GGNCC 1 cut(s) 1280
CseI GACGC 1 cut(s) 750
DdeI CTNAG 4 cut(s) 81, 417, 434, 1325
DpnI GATC 2 cut(s) 1221, 1388
DpnII GATC 2 cut(s) 1219, 1386
EaeI YGGCCR 3 cut(s) 140, 567, 876
Eam1104I CTCTTC 2 cut(s) 356, 1089
EarI CTCTTC 2 cut(s) 356, 1089
EciI GGCGGA 1 cut(s) 1239
Eco130I CCWWGG 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 1280
Eco57I CTGAAG 2 cut(s) 1070, 1445
Eco91I GGTNACC 1 cut(s) 820
EcoO65I GGTNACC 1 cut(s) 820
EcoRII CCWGG 5 cut(s) 124, 424, 447, 927, 1056
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 783
ErhI CCWWGG 1 cut(s) 477
FaqI GGGAC 2 cut(s) 597, 688
FblI GTMKAC 3 cut(s) 32, 764, 1158
Fnu4HI GCNGC 8 cut(s) 321, 375, 465, 545, 711, 879, 1107, 1316
FokI GGATG 4 cut(s) 521, 1031, 1161, 1250
Fsp4HI GCNGC 8 cut(s) 321, 375, 465, 545, 711, 879, 1107, 1316
FspBI CTAG 1 cut(s) 245
GlaI GCGC 2 cut(s) 645, 1206
GluI GCNGC 8 cut(s) 321, 375, 465, 545, 711, 879, 1107, 1316
GsuI CTGGAG 2 cut(s) 879, 1079
HaeII RGCGCY 2 cut(s) 647, 1208
HaeIII GGCC 4 cut(s) 142, 569, 878, 989
HapII CCGG 9 cut(s) 279, 641, 671, 707, 768, 818, 825, 839, 1296
HgaI GACGC 1 cut(s) 750
HhaI GCGC 2 cut(s) 646, 1207
Hin1I GRCGYC 1 cut(s) 761
Hin6I GCGC 2 cut(s) 644, 1205
HinP1I GCGC 2 cut(s) 644, 1205
HindIII AAGCTT 2 cut(s) 611, 1455
HinfI GANTC 5 cut(s) 473, 559, 585, 1353, 1402
HpaII CCGG 9 cut(s) 279, 641, 671, 707, 768, 818, 825, 839, 1296
HphI GGTGA 2 cut(s) 260, 527
Hpy166II GTNNAC 5 cut(s) 33, 502, 765, 1159, 1372
Hpy188I TCNGA 2 cut(s) 435, 962
Hpy188III TCNNGA 4 cut(s) 485, 919, 1234, 1273
Hpy8I GTNNAC 5 cut(s) 33, 502, 765, 1159, 1372
HpyAV CCTTC 7 cut(s) 175, 822, 895, 979, 1121, 1147, 1420
HpyCH4III ACNGT 3 cut(s) 11, 259, 1168
HpyCH4IV ACGT 3 cut(s) 411, 459, 1050
HpyF10VI GCNNNNNNNGC 4 cut(s) 698, 707, 1061, 1284
HpyF3I CTNAG 4 cut(s) 81, 417, 434, 1325
HpySE526I ACGT 3 cut(s) 411, 459, 1050
Hsp92I GRCGYC 1 cut(s) 761
HspAI GCGC 2 cut(s) 644, 1205
KroI GCCGGC 2 cut(s) 640, 706
KroNI GCCGGC 2 cut(s) 642, 708
Kzo9I GATC 2 cut(s) 1219, 1386
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 1 cut(s) 1275
Lsp1109I GCAGC 7 cut(s) 332, 361, 476, 556, 697, 1093, 1302
LweI GCATC 1 cut(s) 627
MaeI CTAG 1 cut(s) 245
MaeII ACGT 3 cut(s) 411, 459, 1050
MaeIII GTNAC 3 cut(s) 11, 281, 820
MalI GATC 2 cut(s) 1221, 1388
MbiI CCGCTC 1 cut(s) 1278
MboI GATC 2 cut(s) 1219, 1386
MfeI CAATTG 1 cut(s) 1012
MhlI GDGCHC 2 cut(s) 504, 1175
MluCI AATT 9 cut(s) 188, 287, 849, 995, 1012, 1137, 1214, 1320, 1378
MlyI GAGTC 2 cut(s) 553, 579
MmeI TCCRAC 1 cut(s) 324
Mph1103I ATGCAT 1 cut(s) 783
MroNI GCCGGC 2 cut(s) 640, 706
MroXI GAANNNNTTC 1 cut(s) 1197
MseI TTAA 3 cut(s) 114, 738, 1459
MslI CAYNNNNRTG 4 cut(s) 386, 507, 635, 1181
MspI CCGG 9 cut(s) 279, 641, 671, 707, 768, 818, 825, 839, 1296
MspR9I CCNGG 8 cut(s) 126, 426, 449, 672, 818, 929, 1058, 1296
MunI CAATTG 1 cut(s) 1012
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 5 cut(s) 126, 426, 449, 929, 1058
MwoI GCNNNNNNNGC 4 cut(s) 698, 707, 1061, 1284
NaeI GCCGGC 2 cut(s) 642, 708
NciI CCSGG 3 cut(s) 672, 818, 1296
NcoI CCATGG 1 cut(s) 477
NdeII GATC 2 cut(s) 1219, 1386
NgoMIV GCCGGC 2 cut(s) 640, 706
NlaIV GGNNCC 1 cut(s) 423
NmeAIII GCCGAG 2 cut(s) 545, 1291
NmuCI GTSAC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 783
PciSI GCTCTTC 1 cut(s) 356
PctI GAATGC 1 cut(s) 68
PdiI GCCGGC 2 cut(s) 642, 708
PdmI GAANNNNTTC 1 cut(s) 1197
PfeI GAWTC 3 cut(s) 473, 1353, 1402
PflFI GACNNNGTC 1 cut(s) 956
PflMI CCANNNNNTGG 1 cut(s) 1418
PkrI GCNGC 8 cut(s) 322, 376, 466, 546, 712, 880, 1108, 1317
PleI GAGTC 2 cut(s) 553, 579
PpsI GAGTC 2 cut(s) 553, 579
Ppu21I YACGTR 1 cut(s) 412
PshAI GACNNNNGTC 1 cut(s) 597
PshBI ATTAAT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 1349
Psp6I CCWGG 5 cut(s) 124, 424, 447, 927, 1056
PspEI GGTNACC 1 cut(s) 820
PspGI CCWGG 5 cut(s) 124, 424, 447, 927, 1056
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 1280
PsyI GACNNNGTC 1 cut(s) 956
RseI CAYNNNNRTG 4 cut(s) 386, 507, 635, 1181
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 114, 738, 1459
SatI GCNGC 8 cut(s) 321, 375, 465, 545, 711, 879, 1107, 1316
Sau3AI GATC 2 cut(s) 1219, 1386
Sau96I GGNCC 1 cut(s) 1280
SchI GAGTC 2 cut(s) 553, 579
ScrFI CCNGG 8 cut(s) 126, 426, 449, 672, 818, 929, 1058, 1296
SduI GDGCHC 2 cut(s) 504, 1175
SfaNI GCATC 1 cut(s) 627
SinI GGWCC 1 cut(s) 1280
SmiMI CAYNNNNRTG 4 cut(s) 386, 507, 635, 1181
Sse9I AATT 9 cut(s) 188, 287, 849, 995, 1012, 1137, 1214, 1320, 1378
SsiI CCGC 3 cut(s) 879, 1250, 1278
SspI AATATT 2 cut(s) 667, 1196
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 8 cut(s) 124, 424, 447, 670, 816, 927, 1056, 1294
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 3 cut(s) 11, 259, 1168
TaiI ACGT 3 cut(s) 414, 462, 1053
TaqI TCGA 5 cut(s) 486, 525, 588, 688, 1233
TasI AATT 9 cut(s) 188, 287, 849, 995, 1012, 1137, 1214, 1320, 1378
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 3 cut(s) 473, 1353, 1402
Tru1I TTAA 3 cut(s) 114, 738, 1459
Tru9I TTAA 3 cut(s) 114, 738, 1459
TscAI CASTG 5 cut(s) 264, 280, 509, 708, 1173
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 7 cut(s) 320, 374, 464, 544, 710, 1106, 1315
Tsp45I GTSAC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 5 cut(s) 264, 280, 509, 708, 1173
Tth111I GACNNNGTC 1 cut(s) 956
Van91I CCANNNNNTGG 1 cut(s) 1418
VneI GTGCAC 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 1280
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 5 cut(s) 188, 287, 995, 1214, 1320
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XmiI GTMKAC 3 cut(s) 32, 764, 1158
XmnI GAANNNNTTC 1 cut(s) 1197
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.