polyadenylate-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16380 |
| malus_domestica | MD09G1199800.v1.1 MD17G1180400.v1.1 |
| prunus_persica | Prupe.3G056300_v2.0.a1 Prupe.3G056300_v2.0.a1 |
| pyrus_communis | pycom09g11700 pycom17g18970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1318 |
| AccI | GTMKAC | 2 cut(s) | 652, 1407 |
| AclI | AACGTT | 1 cut(s) | 609 |
| AclWI | GGATC | 3 cut(s) | 306, 811, 1158 |
| AcoI | YGGCCR | 1 cut(s) | 442 |
| AcsI | RAATTY | 2 cut(s) | 869, 1483 |
| AfaI | GTAC | 5 cut(s) | 308, 319, 325, 920, 1199 |
| AgsI | TTSAA | 4 cut(s) | 54, 130, 262, 434 |
| AjiI | CACGTC | 1 cut(s) | 94 |
| AjnI | CCWGG | 1 cut(s) | 1281 |
| AluBI | AGCT | 8 cut(s) | 363, 581, 773, 998, 1208, 1229, 1257, 1364 |
| AluI | AGCT | 8 cut(s) | 363, 581, 773, 998, 1208, 1229, 1257, 1364 |
| Alw26I | GTCTC | 2 cut(s) | 294, 688 |
| AlwI | GGATC | 3 cut(s) | 306, 811, 1158 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1456 |
| AoxI | GGCC | 1 cut(s) | 442 |
| ApeKI | GCWGC | 3 cut(s) | 578, 1168, 1493 |
| ApoI | RAATTY | 2 cut(s) | 869, 1483 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1318, 1350 |
| AspLEI | GCGC | 3 cut(s) | 7, 224, 1143 |
| AspS9I | GGNCC | 1 cut(s) | 909 |
| AsuHPI | GGTGA | 8 cut(s) | 89, 163, 204, 1215, 1328, 1339, 1481, 1563 |
| AvaII | GGWCC | 1 cut(s) | 909 |
| BalI | TGGCCA | 1 cut(s) | 444 |
| BanI | GGYRCC | 1 cut(s) | 1318 |
| BauI | CACGAG | 1 cut(s) | 8 |
| BbvI | GCAGC | 3 cut(s) | 590, 1180, 1480 |
| BccI | CCATC | 3 cut(s) | 701, 900, 1103 |
| BceAI | ACGGC | 2 cut(s) | 144, 532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 378, 412 |
| BciT130I | CCWGG | 1 cut(s) | 1283 |
| BcoDI | GTCTC | 2 cut(s) | 294, 688 |
| BfaI | CTAG | 3 cut(s) | 372, 687, 723 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BglII | AGATCT | 2 cut(s) | 106, 719 |
| BisI | GCNGC | 3 cut(s) | 579, 1169, 1494 |
| BlpI | GCTNAGC | 1 cut(s) | 1230 |
| BlsI | GCNGC | 3 cut(s) | 580, 1170, 1495 |
| Bme1390I | CCNGG | 1 cut(s) | 1283 |
| Bme18I | GGWCC | 1 cut(s) | 909 |
| BmgBI | CACGTC | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 1 cut(s) | 909 |
| BmiI | GGNNCC | 2 cut(s) | 409, 1320 |
| BmrFI | CCNGG | 1 cut(s) | 1283 |
| BmsI | GCATC | 4 cut(s) | 233, 846, 965, 1408 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1230 |
| BpuEI | CTTGAG | 3 cut(s) | 818, 952, 1364 |
| BsaAI | YACGTR | 2 cut(s) | 346, 922 |
| BsaI | GGTCTC | 1 cut(s) | 294 |
| BsaJI | CCNNGG | 1 cut(s) | 514 |
| BsaWI | WCCGGW | 3 cut(s) | 136, 173, 1331 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1192, 1222 |
| Bse1I | ACTGG | 4 cut(s) | 331, 1195, 1235, 1461 |
| BseBI | CCWGG | 1 cut(s) | 1283 |
| BseDI | CCNNGG | 1 cut(s) | 514 |
| BseGI | GGATG | 4 cut(s) | 574, 712, 980, 1414 |
| BseMII | CTCAG | 3 cut(s) | 305, 1244, 1512 |
| BseNI | ACTGG | 4 cut(s) | 331, 1195, 1235, 1461 |
| BseRI | GAGGAG | 1 cut(s) | 1538 |
| BseXI | GCAGC | 3 cut(s) | 590, 1180, 1480 |
| BseYI | CCCAGC | 1 cut(s) | 1364 |
| BshFI | GGCC | 1 cut(s) | 444 |
| BshNI | GGYRCC | 1 cut(s) | 1318 |
| BsiSI | CCGG | 4 cut(s) | 137, 174, 1332, 1418 |
| BslFI | GGGAC | 1 cut(s) | 1303 |
| BsmAI | GTCTC | 2 cut(s) | 294, 688 |
| BsmFI | GGGAC | 1 cut(s) | 1303 |
| BsmI | GAATGC | 2 cut(s) | 46, 235 |
| BsnI | GGCC | 1 cut(s) | 444 |
| Bso31I | GGTCTC | 1 cut(s) | 294 |
| Bsp143I | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1230 |
| BspANI | GGCC | 1 cut(s) | 444 |
| BspCNI | CTCAG | 3 cut(s) | 304, 1243, 1513 |
| BspHI | TCATGA | 1 cut(s) | 1012 |
| BspLI | GGNNCC | 2 cut(s) | 409, 1320 |
| BspPI | GGATC | 3 cut(s) | 306, 811, 1158 |
| BspT107I | GGYRCC | 1 cut(s) | 1318 |
| BspTNI | GGTCTC | 1 cut(s) | 294 |
| BsrI | ACTGG | 4 cut(s) | 331, 1195, 1235, 1461 |
| BssECI | CCNNGG | 1 cut(s) | 514 |
| BssMI | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| BssSI | CACGAG | 1 cut(s) | 8 |
| Bst2BI | CACGAG | 1 cut(s) | 8 |
| Bst2UI | CCWGG | 1 cut(s) | 1283 |
| Bst4CI | ACNGT | 7 cut(s) | 311, 543, 637, 663, 682, 1061, 1532 |
| Bst6I | CTCTTC | 2 cut(s) | 429, 1059 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 230 |
| BstBAI | YACGTR | 2 cut(s) | 346, 922 |
| BstC8I | GCNNGC | 2 cut(s) | 27, 1206 |
| BstDEI | CTNAG | 7 cut(s) | 83, 291, 382, 765, 1102, 1230, 1521 |
| BstDSI | CCRYGG | 1 cut(s) | 514 |
| BstEII | GGTNACC | 1 cut(s) | 1334 |
| BstF5I | GGATG | 4 cut(s) | 574, 712, 980, 1414 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 3 cut(s) | 7, 224, 1143 |
| BstKTI | GATC | 8 cut(s) | 82, 109, 301, 630, 722, 806, 1153, 1394 |
| BstMAI | GTCTC | 2 cut(s) | 294, 688 |
| BstMBI | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 230, 497, 506, 584, 770, 1047, 1214 |
| BstNI | CCWGG | 1 cut(s) | 1283 |
| BstNSI | RCATGY | 1 cut(s) | 1503 |
| BstPI | GGTNACC | 1 cut(s) | 1334 |
| BstSCI | CCNGG | 1 cut(s) | 1281 |
| BstSNI | TACGTA | 1 cut(s) | 346 |
| BstV1I | GCAGC | 3 cut(s) | 590, 1180, 1480 |
| BstX2I | RGATCY | 3 cut(s) | 106, 298, 719 |
| BstYI | RGATCY | 3 cut(s) | 106, 298, 719 |
| BsuRI | GGCC | 1 cut(s) | 444 |
| BtgI | CCRYGG | 1 cut(s) | 514 |
| BtrI | CACGTC | 1 cut(s) | 94 |
| BtsCI | GGATG | 4 cut(s) | 574, 712, 980, 1414 |
| BtsIMutI | CAGTG | 3 cut(s) | 659, 880, 1454 |
| Cac8I | GCNNGC | 2 cut(s) | 27, 1206 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1456 |
| CciI | TCATGA | 1 cut(s) | 1012 |
| CfoI | GCGC | 3 cut(s) | 7, 224, 1143 |
| Cfr13I | GGNCC | 1 cut(s) | 909 |
| Csp6I | GTAC | 5 cut(s) | 307, 318, 324, 919, 1198 |
| CviAII | CATG | 4 cut(s) | 184, 901, 1013, 1500 |
| CviQI | GTAC | 5 cut(s) | 307, 318, 324, 919, 1198 |
| DdeI | CTNAG | 7 cut(s) | 83, 291, 382, 765, 1102, 1230, 1521 |
| DpnI | GATC | 8 cut(s) | 81, 108, 300, 629, 721, 805, 1152, 1393 |
| DpnII | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| EaeI | YGGCCR | 1 cut(s) | 442 |
| Eam1104I | CTCTTC | 2 cut(s) | 429, 1059 |
| EarI | CTCTTC | 2 cut(s) | 429, 1059 |
| Eco105I | TACGTA | 1 cut(s) | 346 |
| Eco31I | GGTCTC | 1 cut(s) | 294 |
| Eco32I | GATATC | 1 cut(s) | 1088 |
| Eco47I | GGWCC | 1 cut(s) | 909 |
| Eco91I | GGTNACC | 1 cut(s) | 1334 |
| EcoO65I | GGTNACC | 1 cut(s) | 1334 |
| EcoRII | CCWGG | 1 cut(s) | 1281 |
| EcoRV | GATATC | 1 cut(s) | 1088 |
| EcoT22I | ATGCAT | 1 cut(s) | 1401 |
| FaeI | CATG | 4 cut(s) | 187, 904, 1016, 1503 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1537, 1569 |
| FaqI | GGGAC | 1 cut(s) | 1303 |
| FatI | CATG | 4 cut(s) | 183, 900, 1012, 1499 |
| FauNDI | CATATG | 2 cut(s) | 1246, 1261 |
| FblI | GTMKAC | 2 cut(s) | 652, 1407 |
| Fnu4HI | GCNGC | 3 cut(s) | 579, 1169, 1494 |
| FokI | GGATG | 4 cut(s) | 581, 719, 987, 1401 |
| Fsp4HI | GCNGC | 3 cut(s) | 579, 1169, 1494 |
| FspBI | CTAG | 3 cut(s) | 372, 687, 723 |
| GlaI | GCGC | 3 cut(s) | 6, 223, 1142 |
| GluI | GCNGC | 3 cut(s) | 579, 1169, 1494 |
| GsaI | CCCAGC | 1 cut(s) | 1368 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 1 cut(s) | 444 |
| HapII | CCGG | 4 cut(s) | 137, 174, 1332, 1418 |
| HhaI | GCGC | 3 cut(s) | 7, 224, 1143 |
| Hin1II | CATG | 4 cut(s) | 187, 904, 1016, 1503 |
| Hin6I | GCGC | 3 cut(s) | 5, 222, 1141 |
| HinP1I | GCGC | 3 cut(s) | 5, 222, 1141 |
| HincII | GTYRAC | 2 cut(s) | 742, 1477 |
| HindII | GTYRAC | 2 cut(s) | 742, 1477 |
| HpaI | GTTAAC | 2 cut(s) | 742, 1477 |
| HpaII | CCGG | 4 cut(s) | 137, 174, 1332, 1418 |
| HphI | GGTGA | 8 cut(s) | 89, 163, 204, 1215, 1328, 1339, 1481, 1563 |
| Hpy166II | GTNNAC | 6 cut(s) | 653, 742, 791, 1200, 1408, 1477 |
| Hpy188I | TCNGA | 4 cut(s) | 294, 627, 734, 1522 |
| Hpy8I | GTNNAC | 6 cut(s) | 653, 742, 791, 1200, 1408, 1477 |
| Hpy99I | CGWCG | 3 cut(s) | 77, 315, 318 |
| HpyAV | CCTTC | 4 cut(s) | 256, 1221, 1230, 1576 |
| HpyCH4III | ACNGT | 7 cut(s) | 311, 543, 637, 663, 682, 1061, 1532 |
| HpyCH4IV | ACGT | 6 cut(s) | 72, 93, 345, 609, 921, 1356 |
| HpyCH4V | TGCA | 9 cut(s) | 335, 423, 750, 890, 1136, 1168, 1399, 1496, 1609 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 230, 497, 506, 584, 770, 1047, 1214 |
| HpyF3I | CTNAG | 7 cut(s) | 83, 291, 382, 765, 1102, 1230, 1521 |
| HpySE526I | ACGT | 6 cut(s) | 72, 93, 345, 609, 921, 1356 |
| Hsp92II | CATG | 4 cut(s) | 187, 904, 1016, 1503 |
| HspAI | GCGC | 3 cut(s) | 5, 222, 1141 |
| KspAI | GTTAAC | 2 cut(s) | 742, 1477 |
| Kzo9I | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| LmnI | GCTCC | 2 cut(s) | 1213, 1508 |
| Lsp1109I | GCAGC | 3 cut(s) | 590, 1180, 1480 |
| LweI | GCATC | 4 cut(s) | 233, 846, 965, 1408 |
| MaeI | CTAG | 3 cut(s) | 372, 687, 723 |
| MaeII | ACGT | 6 cut(s) | 72, 93, 345, 609, 921, 1356 |
| MaeIII | GTNAC | 8 cut(s) | 94, 161, 169, 188, 637, 875, 1334, 1569 |
| MalI | GATC | 8 cut(s) | 81, 108, 300, 629, 721, 805, 1152, 1393 |
| MboI | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| MfeI | CAATTG | 1 cut(s) | 1604 |
| MflI | RGATCY | 3 cut(s) | 106, 298, 719 |
| MlsI | TGGCCA | 1 cut(s) | 444 |
| MluCI | AATT | 4 cut(s) | 812, 869, 1483, 1604 |
| MluNI | TGGCCA | 1 cut(s) | 444 |
| MlyI | GAGTC | 3 cut(s) | 232, 593, 1076 |
| Mox20I | TGGCCA | 1 cut(s) | 444 |
| Mph1103I | ATGCAT | 1 cut(s) | 1401 |
| MscI | TGGCCA | 1 cut(s) | 444 |
| MseI | TTAA | 4 cut(s) | 245, 741, 1464, 1476 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1017 |
| Msp20I | TGGCCA | 1 cut(s) | 444 |
| MspA1I | CMGCKG | 1 cut(s) | 1364 |
| MspI | CCGG | 4 cut(s) | 137, 174, 1332, 1418 |
| MspR9I | CCNGG | 1 cut(s) | 1283 |
| MunI | CAATTG | 1 cut(s) | 1604 |
| Mva1269I | GAATGC | 2 cut(s) | 46, 235 |
| MvaI | CCWGG | 1 cut(s) | 1283 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 230, 497, 506, 584, 770, 1047, 1214 |
| NdeI | CATATG | 2 cut(s) | 1246, 1261 |
| NdeII | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| NlaIII | CATG | 4 cut(s) | 187, 904, 1016, 1503 |
| NlaIV | GGNNCC | 2 cut(s) | 409, 1320 |
| NmuCI | GTSAC | 5 cut(s) | 94, 169, 875, 1334, 1569 |
| NsiI | ATGCAT | 1 cut(s) | 1401 |
| NspI | RCATGY | 1 cut(s) | 1503 |
| PagI | TCATGA | 1 cut(s) | 1012 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 319 |
| PctI | GAATGC | 2 cut(s) | 46, 235 |
| PfeI | GAWTC | 8 cut(s) | 209, 352, 622, 779, 938, 1035, 1155, 1592 |
| PflFI | GACNNNGTC | 1 cut(s) | 1555 |
| PkrI | GCNGC | 3 cut(s) | 580, 1170, 1495 |
| PleI | GAGTC | 3 cut(s) | 232, 593, 1075 |
| PpsI | GAGTC | 3 cut(s) | 232, 593, 1075 |
| Ppu21I | YACGTR | 2 cut(s) | 346, 922 |
| Psp1406I | AACGTT | 1 cut(s) | 609 |
| Psp6I | CCWGG | 1 cut(s) | 1281 |
| PspEI | GGTNACC | 1 cut(s) | 1334 |
| PspFI | CCCAGC | 1 cut(s) | 1364 |
| PspGI | CCWGG | 1 cut(s) | 1281 |
| PspN4I | GGNNCC | 2 cut(s) | 409, 1320 |
| PspPI | GGNCC | 1 cut(s) | 909 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 132, 164 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1456 |
| PsuI | RGATCY | 3 cut(s) | 106, 298, 719 |
| PsyI | GACNNNGTC | 1 cut(s) | 1555 |
| PvuII | CAGCTG | 1 cut(s) | 1364 |
| RsaI | GTAC | 5 cut(s) | 308, 319, 325, 920, 1199 |
| RsaNI | GTAC | 5 cut(s) | 307, 318, 324, 919, 1198 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1017 |
| SaqAI | TTAA | 4 cut(s) | 245, 741, 1464, 1476 |
| SatI | GCNGC | 3 cut(s) | 579, 1169, 1494 |
| Sau3AI | GATC | 8 cut(s) | 79, 106, 298, 627, 719, 803, 1150, 1391 |
| Sau96I | GGNCC | 1 cut(s) | 909 |
| SchI | GAGTC | 3 cut(s) | 232, 593, 1076 |
| ScrFI | CCNGG | 1 cut(s) | 1283 |
| SfaNI | GCATC | 4 cut(s) | 233, 846, 965, 1408 |
| SinI | GGWCC | 1 cut(s) | 909 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1017 |
| SmlI | CTYRAG | 3 cut(s) | 833, 931, 1379 |
| SmoI | CTYRAG | 3 cut(s) | 833, 931, 1379 |
| SnaBI | TACGTA | 1 cut(s) | 346 |
| Sse9I | AATT | 4 cut(s) | 812, 869, 1483, 1604 |
| SspI | AATATT | 1 cut(s) | 1175 |
| SspMI | CTAG | 3 cut(s) | 372, 687, 723 |
| StyD4I | CCNGG | 1 cut(s) | 1281 |
| TaaI | ACNGT | 7 cut(s) | 311, 543, 637, 663, 682, 1061, 1532 |
| TaiI | ACGT | 6 cut(s) | 75, 96, 348, 612, 924, 1359 |
| TaqI | TCGA | 7 cut(s) | 207, 227, 365, 630, 806, 1129, 1153 |
| TasI | AATT | 4 cut(s) | 812, 869, 1483, 1604 |
| TatI | WGTACW | 1 cut(s) | 1197 |
| TfiI | GAWTC | 8 cut(s) | 209, 352, 622, 779, 938, 1035, 1155, 1592 |
| Tru1I | TTAA | 4 cut(s) | 245, 741, 1464, 1476 |
| Tru9I | TTAA | 4 cut(s) | 245, 741, 1464, 1476 |
| TscAI | CASTG | 3 cut(s) | 666, 880, 1461 |
| TseFI | GTSAC | 5 cut(s) | 94, 169, 875, 1334, 1569 |
| TseI | GCWGC | 3 cut(s) | 578, 1168, 1493 |
| Tsp45I | GTSAC | 5 cut(s) | 94, 169, 875, 1334, 1569 |
| TspDTI | ATGAA | 6 cut(s) | 140, 547, 585, 858, 959, 963 |
| TspGWI | ACGGA | 3 cut(s) | 32, 113, 136 |
| TspRI | CASTG | 3 cut(s) | 666, 880, 1461 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1555 |
| VpaK11BI | GGWCC | 1 cut(s) | 909 |
| XapI | RAATTY | 2 cut(s) | 869, 1483 |
| XbaI | TCTAGA | 1 cut(s) | 722 |
| XceI | RCATGY | 1 cut(s) | 1503 |
| XmiI | GTMKAC | 2 cut(s) | 652, 1407 |
| XspI | CTAG | 3 cut(s) | 372, 687, 723 |
| Zsp2I | ATGCAT | 1 cut(s) | 1401 |