pycom09g11700

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
9901437 .. 9903751
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11700.1

Sequence Viewer

Length: 1341 bp
ATGGCGGCAGAGCTCTCAGACCCCAAAACCCCAGTGCCGCCACCACCACCAGCGCCTCCACTACCGCCGACAGTAACAGTGCGACCGCAGGCGCCGGCCGATCCTGAGAATAATTTCTCGCTGTATGTTGGCGACCTGGACCCACACGTCACCGACGACGACCTCCTCGCTACTTTTCGTTTCATCGGTCCCATCGCCTCCGTCCGTGTCTGCCGTGACTCTCACTCCGGCGAGTCCCTCCGCTACGGCTATGTCAACTTCTACTCACACTCTCACGCATCCAAGGCTATGGCTTGTCTGAACCACACTGAGCTGAAAGGGAAAACCATGAGAATAATGTGGTGTCAGAGGGATCCCGTTCCAAGGAAAACTGGTCTTGGAAATGTCTTTGTGAAGAACCTTGACCCTGAAATCACCAGCACTCACTTGCAGGACATGTTCGGGGAGTTTGGGACTATACACTCTTGCAAGGTAGCCGAAATAAATGGGAGGAGCAAGGGTTTTGGGTTTGTCCAGTTTGAAAAAGAGGAATCGGCTATGGCTGCTGTCAATGCTCTCAATGATACAATCATTAAGGGGAAGAAGTTATATGTATCGAAATTTGTGAAGAAAAGTGAGAGGATACCAGCCCAGGATGAATCCAAATTTACGAATCTGTTTGTGAAAAATCTGGATGAACATGTAACTGAGGATCTGCTTCGAGAGATGTTCTCTCAGTACGGAAGTGTTCATAGTCTTGTCATCATGAAGGATGAGAAAGGGAAGTCAAAAGGTTTCGGGTTTGTTAACTTTGAGTCACCAGAAGAGGCTAAGAAGGCTGTTGAGGGAATGAATGGTGCACTGCTGGGATCAAAACATTTGTTTGTAGGAAGGGCTCAAAAGAAAGCTGAGAGGGAAAAGCTTTTAAAATGTAAAAAGGAAATGCTGAACAGTCAGATTGAGAAACTTGAGTCTACGAATCTCTATGTTAAGAATCTAGCTGAATCTGTTGATGATAGCAAATTAGGAGAACATTTCAGTGCCCTTGGGAAGATTCTATCGGCGAAGGTGATGCGTGATGGCAACGGGATGAGCAGAGGTTTTGGTTTTGTTTGCTTCTCAACTCTTCAAGAAGCTGCAAAAGCTCTCAGTAATCTTAACGGTAAACAAGATCTTGTTGTGTCTTTTCCTGCTTTTGCATCTGTTAAGCCTATATTTGGTTTATGCCTGTCTGATTTGAGTTTGTTTTTCTCAGGAGCTATGTTTGAAGGAAGAAAACTTTATGTGTCTGTAGCTCAACGAAAGGAAGATCGCTGCAAGGCTTTGCAAGATTACTATACTCTTCAGCTGCCACAAAGTTGA

Protein Analysis

447

Amino Acids

49.46

Weight (kDa)

8.69

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 41 - 111 6.5e-17 RNA recognition motif
RRM_1 PF00076 129 - 196 2.9e-20 RNA recognition motif
RRM_1 PF00076 219 - 286 1.1e-23 RNA recognition motif
RRM_1 PF00076 321 - 383 3.8e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16380
malus_domestica MD09G1199800.v1.1 MD17G1180400.v1.1
prunus_persica Prupe.3G056300_v2.0.a1 Prupe.3G056300_v2.0.a1
pyrus_communis pycom09g11700 pycom17g18970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 953
AciI CCGC 5 cut(s) 5, 38, 65, 86, 241
AclWI GGATC 5 cut(s) 95, 347, 360, 699, 856
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 599, 644
AcuI CTGAAG 1 cut(s) 1307
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 2 cut(s) 363, 1196
AflIII ACRYGT 3 cut(s) 145, 435, 679
AgsI TTSAA 3 cut(s) 521, 1109, 1247
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 2 cut(s) 135, 630
Alw21I GWGCWC 2 cut(s) 15, 841
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 5 cut(s) 95, 347, 360, 699, 856
AoxI GGCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 4 cut(s) 542, 1115, 1293, 1327
ApoI RAATTY 2 cut(s) 599, 644
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 55, 94
AspS9I GGNCC 2 cut(s) 139, 188
AsuHPI GGTGA 4 cut(s) 142, 406, 789, 1060
AvaII GGWCC 2 cut(s) 139, 188
BaeGI GKGCMC 2 cut(s) 841, 1024
BamHI GGATCC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 2 cut(s) 15, 877
Bbv12I GWGCWC 2 cut(s) 15, 841
BbvI GCAGC 4 cut(s) 529, 1102, 1280, 1314
BccI CCATC 2 cut(s) 200, 1052
BceAI ACGGC 2 cut(s) 198, 262
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 2 cut(s) 137, 632
BciVI GTATCC 1 cut(s) 615
BfaI CTAG 1 cut(s) 977
BfmI CTRYAG 1 cut(s) 1269
BfoI RGCGCY 2 cut(s) 56, 95
BfuI GTATCC 1 cut(s) 615
BglII AGATCT 1 cut(s) 1150
BisI GCNGC 6 cut(s) 6, 38, 543, 1116, 1294, 1328
BlsI GCNGC 6 cut(s) 7, 39, 544, 1117, 1295, 1329
Bme1390I CCNGG 2 cut(s) 137, 632
Bme18I GGWCC 2 cut(s) 139, 188
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 139, 188
BmiI GGNNCC 4 cut(s) 93, 141, 190, 354
BmrFI CCNGG 2 cut(s) 137, 632
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 3 cut(s) 287, 1041, 1187
BmuI ACTGGG 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpuEI CTTGAG 1 cut(s) 968
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 4 cut(s) 282, 362, 630, 1024
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 484, 514
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 1196
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 32, 376, 514
BseBI CCWGG 2 cut(s) 137, 632
BseDI CCNNGG 4 cut(s) 282, 362, 630, 1024
BseGI GGATG 5 cut(s) 278, 640, 679, 757, 1074
BseLI CCNNNNNNNGG 2 cut(s) 363, 1196
BseMII CTCAG 8 cut(s) 30, 96, 300, 678, 728, 879, 1141, 1245
BseNI ACTGG 3 cut(s) 32, 376, 514
BseRI GAGGAG 2 cut(s) 155, 505
BseSI GKGCMC 2 cut(s) 841, 1024
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 4 cut(s) 529, 1102, 1280, 1314
BseYI CCCAGC 1 cut(s) 844
Bsh1285I CGRYCG 2 cut(s) 86, 99
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 2 cut(s) 86, 99
BsiHKAI GWGCWC 2 cut(s) 15, 841
BsiSI CCGG 2 cut(s) 95, 228
BslFI GGGAC 3 cut(s) 174, 220, 466
BslI CCNNNNNNNGG 2 cut(s) 363, 1196
BsmFI GGGAC 3 cut(s) 174, 220, 466
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 4 cut(s) 15, 841, 877, 1024
Bsp143I GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
BspACI CCGC 5 cut(s) 5, 38, 65, 86, 241
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 8 cut(s) 29, 97, 301, 679, 727, 880, 1140, 1244
BspHI TCATGA 1 cut(s) 744
BspLI GGNNCC 4 cut(s) 93, 141, 190, 354
BspPI GGATC 5 cut(s) 95, 347, 360, 699, 856
BspT107I GGYRCC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 32, 376, 514
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 4 cut(s) 282, 362, 630, 1024
BssMI GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 3 cut(s) 282, 362, 1024
Bst2UI CCWGG 2 cut(s) 137, 632
Bst4CI ACNGT 4 cut(s) 73, 79, 932, 1142
Bst6I CTCTTC 3 cut(s) 798, 1110, 1326
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 90, 96
BstDEI CTNAG 9 cut(s) 16, 105, 309, 687, 714, 810, 888, 1127, 1231
BstF5I GGATG 5 cut(s) 278, 640, 679, 757, 1074
BstH2I RGCGCY 2 cut(s) 56, 95
BstHHI GCGC 2 cut(s) 55, 94
BstKTI GATC 6 cut(s) 103, 355, 694, 851, 1153, 1291
BstMBI GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
BstMCI CGRYCG 2 cut(s) 86, 99
BstMWI GCNNNNNNNGC 5 cut(s) 284, 542, 551, 815, 1121
BstNI CCWGG 2 cut(s) 137, 632
BstNSI RCATGY 2 cut(s) 439, 683
BstSCI CCNGG 2 cut(s) 135, 630
BstSFI CTRYAG 1 cut(s) 1269
BstSLI GKGCMC 2 cut(s) 841, 1024
BstV1I GCAGC 4 cut(s) 529, 1102, 1280, 1314
BstX2I RGATCY 3 cut(s) 352, 691, 1150
BstXI CCANNNNNNTGG 1 cut(s) 289
BstYI RGATCY 3 cut(s) 352, 691, 1150
BstZI CGGCCG 1 cut(s) 96
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 5 cut(s) 278, 640, 679, 757, 1074
BtsI GCAGTG 1 cut(s) 839
BtsIMutI CAGTG 5 cut(s) 39, 84, 306, 839, 1024
Cac8I GCNNGC 2 cut(s) 90, 96
CciI TCATGA 1 cut(s) 744
CfoI GCGC 2 cut(s) 55, 94
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 139, 188
Csp6I GTAC 1 cut(s) 718
CviAII CATG 4 cut(s) 328, 436, 680, 745
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 9 cut(s) 16, 105, 309, 687, 714, 810, 888, 1127, 1231
DinI GGCGCC 1 cut(s) 93
DpnI GATC 6 cut(s) 102, 354, 693, 850, 1152, 1290
DpnII GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
DraI TTTAAA 1 cut(s) 906
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 3 cut(s) 798, 1110, 1326
EarI CTCTTC 3 cut(s) 798, 1110, 1326
Ecl136II GAGCTC 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 96
Eco130I CCWWGG 3 cut(s) 282, 362, 1024
Eco24I GRGCYC 2 cut(s) 15, 877
Eco47I GGWCC 2 cut(s) 139, 188
Eco52I CGGCCG 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 1307
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 135, 630
EcoT14I CCWWGG 3 cut(s) 282, 362, 1024
EcoT38I GRGCYC 2 cut(s) 15, 877
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
ErhI CCWWGG 3 cut(s) 282, 362, 1024
FaeI CATG 4 cut(s) 331, 439, 683, 748
FaqI GGGAC 3 cut(s) 174, 220, 466
FatI CATG 4 cut(s) 327, 435, 679, 744
FblI GTMKAC 1 cut(s) 953
Fnu4HI GCNGC 6 cut(s) 6, 38, 543, 1116, 1294, 1328
FokI GGATG 5 cut(s) 265, 647, 686, 764, 1081
FriOI GRGCYC 2 cut(s) 15, 877
Fsp4HI GCNGC 6 cut(s) 6, 38, 543, 1116, 1294, 1328
FspBI CTAG 1 cut(s) 977
GlaI GCGC 2 cut(s) 54, 93
GluI GCNGC 6 cut(s) 6, 38, 543, 1116, 1294, 1328
GsaI CCCAGC 1 cut(s) 848
HaeII RGCGCY 2 cut(s) 56, 95
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 95, 228
HhaI GCGC 2 cut(s) 55, 94
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 4 cut(s) 331, 439, 683, 748
Hin6I GCGC 2 cut(s) 53, 92
HinP1I GCGC 2 cut(s) 53, 92
HincII GTYRAC 2 cut(s) 256, 787
HindII GTYRAC 2 cut(s) 256, 787
HindIII AAGCTT 1 cut(s) 899
HpaI GTTAAC 1 cut(s) 787
HpaII CCGG 2 cut(s) 95, 228
HphI GGTGA 4 cut(s) 142, 406, 789, 1060
Hpy166II GTNNAC 5 cut(s) 256, 787, 839, 954, 1145
Hpy188I TCNGA 5 cut(s) 19, 300, 348, 936, 1213
Hpy188III TCNNGA 6 cut(s) 104, 671, 701, 745, 1109, 1233
Hpy8I GTNNAC 5 cut(s) 256, 787, 839, 954, 1145
Hpy99I CGWCG 2 cut(s) 158, 161
HpyAV CCTTC 5 cut(s) 742, 808, 864, 1039, 1241
HpyCH4III ACNGT 4 cut(s) 73, 79, 932, 1142
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 7 cut(s) 430, 468, 839, 1118, 1178, 1296, 1306
HpyF10VI GCNNNNNNNGC 5 cut(s) 284, 542, 551, 815, 1121
HpyF3I CTNAG 9 cut(s) 16, 105, 309, 687, 714, 810, 888, 1127, 1231
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 4 cut(s) 331, 439, 683, 748
HspAI GCGC 2 cut(s) 53, 92
KasI GGCGCC 1 cut(s) 91
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 787
Kzo9I GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
LmnI GCTCC 2 cut(s) 492, 1235
Lsp1109I GCAGC 4 cut(s) 529, 1102, 1280, 1314
LweI GCATC 3 cut(s) 287, 1041, 1187
MaeI CTAG 1 cut(s) 977
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 5 cut(s) 73, 148, 215, 682, 795
MalI GATC 6 cut(s) 102, 354, 693, 850, 1152, 1290
MboI GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
MboII GAAGA 9 cut(s) 406, 592, 619, 815, 1042, 1097, 1263, 1298, 1313
MflI RGATCY 3 cut(s) 352, 691, 1150
MhlI GDGCHC 4 cut(s) 15, 841, 877, 1024
MluCI AATT 4 cut(s) 112, 599, 644, 1001
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 4 cut(s) 212, 242, 803, 959
MroNI GCCGGC 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 6 cut(s) 573, 786, 905, 969, 1137, 1185
MslI CAYNNNNRTG 1 cut(s) 1017
MspA1I CMGCKG 1 cut(s) 1327
MspI CCGG 2 cut(s) 95, 228
MspR9I CCNGG 2 cut(s) 137, 632
MvaI CCWGG 2 cut(s) 137, 632
MwoI GCNNNNNNNGC 5 cut(s) 284, 542, 551, 815, 1121
NaeI GCCGGC 1 cut(s) 96
NarI GGCGCC 1 cut(s) 92
NdeII GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 4 cut(s) 331, 439, 683, 748
NlaIV GGNNCC 4 cut(s) 93, 141, 190, 354
NmuCI GTSAC 3 cut(s) 148, 215, 795
NspI RCATGY 2 cut(s) 439, 683
PagI TCATGA 1 cut(s) 744
PciI ACATGT 2 cut(s) 435, 679
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 7 cut(s) 530, 638, 652, 958, 973, 983, 1033
PkrI GCNGC 6 cut(s) 7, 39, 544, 1117, 1295, 1329
PleI GAGTC 4 cut(s) 212, 241, 802, 958
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 4 cut(s) 212, 241, 802, 958
PscI ACATGT 2 cut(s) 435, 679
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 135, 630
PspFI CCCAGC 1 cut(s) 844
PspGI CCWGG 2 cut(s) 135, 630
PspN4I GGNNCC 4 cut(s) 93, 141, 190, 354
PspPI GGNCC 2 cut(s) 139, 188
PsuI RGATCY 3 cut(s) 352, 691, 1150
PvuII CAGCTG 1 cut(s) 1327
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 1017
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 6 cut(s) 573, 786, 905, 969, 1137, 1185
SatI GCNGC 6 cut(s) 6, 38, 543, 1116, 1294, 1328
Sau3AI GATC 6 cut(s) 100, 352, 691, 848, 1150, 1288
Sau96I GGNCC 2 cut(s) 139, 188
SchI GAGTC 4 cut(s) 212, 242, 803, 959
ScrFI CCNGG 2 cut(s) 137, 632
SduI GDGCHC 4 cut(s) 15, 841, 877, 1024
SfaNI GCATC 3 cut(s) 287, 1041, 1187
SfcI CTRYAG 1 cut(s) 1269
SfoI GGCGCC 1 cut(s) 93
SinI GGWCC 2 cut(s) 139, 188
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
Sse9I AATT 4 cut(s) 112, 599, 644, 1001
SsiI CCGC 5 cut(s) 5, 38, 65, 86, 241
SspDI GGCGCC 1 cut(s) 91
SspMI CTAG 1 cut(s) 977
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 135, 630
StyI CCWWGG 3 cut(s) 282, 362, 1024
TaaI ACNGT 4 cut(s) 73, 79, 932, 1142
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 596, 700
TaqII GACCGA 1 cut(s) 176
TasI AATT 4 cut(s) 112, 599, 644, 1001
TauI GCSGC 2 cut(s) 8, 40
TfiI GAWTC 7 cut(s) 530, 638, 652, 958, 973, 983, 1033
Tru1I TTAA 6 cut(s) 573, 786, 905, 969, 1137, 1185
Tru9I TTAA 6 cut(s) 573, 786, 905, 969, 1137, 1185
TscAI CASTG 5 cut(s) 39, 84, 313, 846, 1024
TseFI GTSAC 3 cut(s) 148, 215, 795
TseI GCWGC 4 cut(s) 542, 1115, 1293, 1327
Tsp45I GTSAC 3 cut(s) 148, 215, 795
TspDTI ATGAA 6 cut(s) 172, 651, 690, 719, 761, 845
TspGWI ACGGA 3 cut(s) 190, 194, 735
TspRI CASTG 5 cut(s) 39, 84, 313, 846, 1024
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 2 cut(s) 139, 188
XapI RAATTY 2 cut(s) 599, 644
XceI RCATGY 2 cut(s) 439, 683
XmiI GTMKAC 1 cut(s) 953
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.