AT3G18490

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6348628 .. 6350832
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18490.1

Sequence Viewer

Length: 1503 bp
ATGGCTTTCCCGCGATTTCTTTCTCTCCTCGCCGTCGTCACTCTCTCTCTTTTCCTCACCACCACTGATGCTTCCTCTCGCTCTCTATCCACTCCACCTAAAACGAACGTACTCGACGTCGTTTCATCTCTCCAGCAAACACAAACTATCCTCTCACTCGACCCGACTCGTTCCTCACTCACCACCACCAAACCCGAATCCCTATCCGACCCGGTTTTCTTCAATTCATCTTCACCACTATCTCTAGAGCTTCACTCTCGAGACACTTTCGTCGCGTCACAGCACAAAGACTACAAAAGCTTAACACTCAGTCGACTCGAGCGCGACTCATCCCGAGTCGCCGGAATCGTCGCGAAGATCCGTTTCGCCGTCGAAGGAGTCGATAGATCCGATCTCAAACCCGTTTACAACGAAGATACACGATACCAAACCGAGGATCTAACGACACCTGTCGTCTCCGGAGCCTCTCAAGGAAGCGGCGAGTATTTCTCAAGAATCGGTGTCGGAACTCCGGCGAAAGAGATGTACTTGGTTCTCGACACCGGAAGCGACGTAAATTGGATCCAGTGTGAACCTTGCGCCGACTGTTACCAACAGTCCGACCCGGTTTTTAACCCGACTTCGTCTTCCACATACAAATCTCTCACTTGCTCTGCTCCACAGTGCTCTCTTCTCGAAACCTCCGCTTGTCGGTCAAACAAATGTCTCTACCAAGTTAGTTACGGAGACGGATCTTTCACCGTCGGTGAACTCGCTACCGATACGGTGACGTTTGGTAACTCTGGTAAAATAAACAACGTCGCTTTGGGTTGTGGTCACGACAACGAAGGTCTCTTTACCGGAGCAGCCGGTTTACTCGGTTTAGGCGGTGGTGTTTTATCGATAACCAATCAAATGAAAGCGACGTCGTTTTCTTACTGCCTCGTTGACCGTGACTCGGGAAAGTCCTCAAGTCTTGATTTCAACTCGGTCCAACTCGGTGGCGGAGACGCGACGGCGCCGCTTCTACGTAACAAAAAGATCGACACTTTCTACTACGTCGGACTCAGTGGATTCAGCGTCGGTGGTGAAAAAGTCGTGCTGCCTGATGCGATCTTCGATGTCGATGCTTCGGGAAGCGGAGGAGTGATCTTGGATTGTGGAACCGCCGTGACTCGTCTTCAGACGCAGGCTTATAACTCGCTGCGTGACGCGTTTCTTAAACTCACCGTGAATCTCAAAAAAGGATCTTCGAGCATCTCTCTGTTCGACACGTGTTACGATTTCTCGTCTCTCTCCACTGTGAAAGTACCGACGGTTGCGTTTCATTTCACGGGAGGGAAGTCGCTTGATTTGCCGGCGAAGAATTATCTGATCCCTGTGGATGATAGTGGAACGTTTTGCTTCGCTTTTGCTCCGACGTCGTCGTCGTTGTCGATCATCGGGAATGTGCAGCAGCAAGGGACACGTATCACTTACGATCTATCCAAAAATGTTATCGGATTGTCAGGGAATAAATGCTAA

Protein Analysis

500

Amino Acids

53.23

Weight (kDa)

5.27

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 161 - 496 1.4e-19 Eukaryotic aspartyl protease
TAXi_N PF14543 162 - 319 5.3e-48 Xylanase inhibitor N-terminal
TAXi_C PF14541 345 - 495 1.5e-33 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014903)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18490
fragaria_vesca FvH4_5g12520
malus_domestica MD14G1223600.v1.1 MD14G1223700.v1.1
prunus_persica Prupe.5G218800_v2.0.a1
pyrus_communis pycom06g18990 pycom14g18490
rosa_chinensis RchiOBHm_Chr7g0184841
rosa_laevigata RLG00000004950
rosa_roxburghii Rroxscaffold_3G00269340
rosa_rugosa Rorug06G0465300
rosa_samantha Rh7AG077600 Rh7BG069700 Rh7CG070500 Rh7DG069900
rosa_wichuraiana Rw7G005780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
AasI GACNNNNNNGTC 2 cut(s) 269, 1405
AatII GACGTC 3 cut(s) 120, 908, 1403
AccB1I GGYRCC 1 cut(s) 997
AccI GTMKAC 1 cut(s) 313
AccII CGCG 6 cut(s) 13, 275, 324, 353, 992, 1193
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 8 cut(s) 11, 477, 684, 867, 984, 1001, 1119, 1146
AclI AACGTT 1 cut(s) 1376
AclWI GGATC 8 cut(s) 352, 381, 444, 556, 569, 739, 1234, 1348
AcuI CTGAAG 1 cut(s) 1145
AcvI CACGTG 1 cut(s) 1254
AcyI GRCGYC 4 cut(s) 117, 905, 998, 1400
AfaI GTAC 3 cut(s) 111, 527, 1290
AfiI CCNNNNNNNGG 3 cut(s) 433, 690, 937
AflIII ACRYGT 4 cut(s) 1191, 1251, 1253, 1445
AgsI TTSAA 2 cut(s) 223, 964
AluBI AGCT 2 cut(s) 250, 300
AluI AGCT 2 cut(s) 250, 300
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 7 cut(s) 255, 460, 710, 720, 836, 981, 1275
AlwI GGATC 8 cut(s) 352, 381, 444, 556, 569, 739, 1234, 1348
Ama87I CYCGRG 4 cut(s) 258, 317, 333, 937
Aor13HI TCCGGA 1 cut(s) 458
ApeKI GCWGC 5 cut(s) 845, 1081, 1183, 1432, 1435
AspLEI GCGC 3 cut(s) 324, 581, 1000
AspS9I GGNCC 1 cut(s) 970
AsuC2I CCSGG 2 cut(s) 212, 605
AsuHPI GGTGA 8 cut(s) 49, 172, 225, 730, 758, 778, 1079, 1198
AvaI CYCGRG 4 cut(s) 258, 317, 333, 937
AvaII GGWCC 1 cut(s) 970
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 997
BbrPI CACGTG 1 cut(s) 1254
BbsI GAAGAC 2 cut(s) 618, 1151
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 5 cut(s) 857, 1068, 1170, 1444, 1447
BceAI ACGGC 4 cut(s) 17, 353, 1011, 1133
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BcnI CCSGG 2 cut(s) 212, 605
BcoDI GTCTC 7 cut(s) 255, 460, 710, 720, 836, 981, 1275
BfaI CTAG 1 cut(s) 245
BfoI RGCGCY 1 cut(s) 1001
BisI GCNGC 7 cut(s) 478, 846, 1001, 1082, 1184, 1433, 1436
BlsI GCNGC 7 cut(s) 479, 847, 1002, 1083, 1185, 1434, 1437
Bme1390I CCNGG 2 cut(s) 212, 605
Bme18I GGWCC 1 cut(s) 970
BmeT110I CYCGRG 4 cut(s) 258, 317, 333, 937
BmgT120I GGNCC 1 cut(s) 970
BmiI GGNNCC 4 cut(s) 463, 563, 999, 1144
BmrFI CCNGG 2 cut(s) 212, 605
BmsI GCATC 4 cut(s) 58, 1078, 1096, 1245
BoxI GACNNNNGTC 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 618, 1151
BplI GAGNNNNNCTC 8 cut(s) 239, 271, 311, 343, 473, 505, 1225, 1257
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 3 cut(s) 453, 475, 934
BpuMI CCSGG 2 cut(s) 212, 605
Bsa29I ATCGAT 1 cut(s) 881
BsaAI YACGTR 3 cut(s) 1010, 1254, 1448
BsaHI GRCGYC 4 cut(s) 117, 905, 998, 1400
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 1 cut(s) 432
BsaWI WCCGGW 3 cut(s) 458, 542, 839
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 690, 937
Bse118I RCCGGY 2 cut(s) 848, 1336
Bse1I ACTGG 1 cut(s) 565
BseAI TCCGGA 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 881
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 2 cut(s) 329, 1369
BseLI CCNNNNNNNGG 3 cut(s) 433, 690, 937
BseMII CTCAG 2 cut(s) 322, 1060
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 17, 1137
BseXI GCAGC 5 cut(s) 857, 1068, 1170, 1444, 1447
BsgI GTGCAG 1 cut(s) 1451
Bsh1236I CGCG 6 cut(s) 13, 275, 324, 353, 992, 1193
BshNI GGYRCC 1 cut(s) 997
BshVI ATCGAT 1 cut(s) 881
BsiHKAI GWGCWC 1 cut(s) 668
BsiHKCI CYCGRG 4 cut(s) 258, 317, 333, 937
BsiSI CCGG 9 cut(s) 212, 342, 459, 512, 543, 605, 840, 849, 1337
BslFI GGGAC 1 cut(s) 1456
BslI CCNNNNNNNGG 3 cut(s) 433, 690, 937
BsmAI GTCTC 7 cut(s) 255, 460, 710, 720, 836, 981, 1275
BsmBI CGTCTC 4 cut(s) 460, 720, 981, 1275
BsmFI GGGAC 1 cut(s) 1456
Bso31I GGTCTC 1 cut(s) 836
BsoBI CYCGRG 4 cut(s) 258, 317, 333, 937
Bsp1286I GDGCHC 1 cut(s) 668
Bsp13I TCCGGA 1 cut(s) 458
Bsp68I TCGCGA 1 cut(s) 353
BspACI CCGC 8 cut(s) 11, 477, 684, 867, 984, 1001, 1119, 1146
BspCNI CTCAG 2 cut(s) 321, 1059
BspDI ATCGAT 1 cut(s) 881
BspEI TCCGGA 1 cut(s) 458
BspFNI CGCG 6 cut(s) 13, 275, 324, 353, 992, 1193
BspLI GGNNCC 4 cut(s) 463, 563, 999, 1144
BspPI GGATC 8 cut(s) 352, 381, 444, 556, 569, 739, 1234, 1348
BspT107I GGYRCC 1 cut(s) 997
BspTNI GGTCTC 1 cut(s) 836
BsrFI RCCGGY 2 cut(s) 848, 1336
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 2 cut(s) 848, 1336
BssECI CCNNGG 1 cut(s) 432
BssNI GRCGYC 4 cut(s) 117, 905, 998, 1400
Bst4CI ACNGT 9 cut(s) 587, 597, 663, 742, 766, 932, 1210, 1282, 1297
Bst6I CTCTTC 1 cut(s) 675
BstACI GRCGYC 4 cut(s) 117, 905, 998, 1400
BstBAI YACGTR 3 cut(s) 1010, 1254, 1448
BstC8I GCNNGC 2 cut(s) 1170, 1338
BstDEI CTNAG 2 cut(s) 308, 1046
BstF5I GGATG 2 cut(s) 329, 1369
BstFNI CGCG 6 cut(s) 13, 275, 324, 353, 992, 1193
BstH2I RGCGCY 1 cut(s) 1001
BstHHI GCGC 3 cut(s) 324, 581, 1000
BstMAI GTCTC 7 cut(s) 255, 460, 710, 720, 836, 981, 1275
BstMWI GCNNNNNNNGC 1 cut(s) 1333
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 210, 603
BstSNI TACGTA 1 cut(s) 1010
BstUI CGCG 6 cut(s) 13, 275, 324, 353, 992, 1193
BstV1I GCAGC 5 cut(s) 857, 1068, 1170, 1444, 1447
BstV2I GAAGAC 2 cut(s) 618, 1151
BstX2I RGATCY 6 cut(s) 357, 386, 436, 561, 731, 1226
BstXI CCANNNNNNTGG 1 cut(s) 980
BstYI RGATCY 6 cut(s) 357, 386, 436, 561, 731, 1226
Bsu15I ATCGAT 1 cut(s) 881
BsuTUI ATCGAT 1 cut(s) 881
BtsCI GGATG 2 cut(s) 329, 1369
BtsIMutI CAGTG 5 cut(s) 63, 572, 668, 1054, 1278
BtuMI TCGCGA 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 1170, 1338
CfoI GCGC 3 cut(s) 324, 581, 1000
Cfr10I RCCGGY 2 cut(s) 848, 1336
Cfr13I GGNCC 1 cut(s) 970
ClaI ATCGAT 1 cut(s) 881
CseI GACGC 5 cut(s) 264, 998, 1048, 1174, 1199
Csp6I GTAC 3 cut(s) 110, 526, 1289
CviJI RGCY 6 cut(s) 5, 250, 300, 464, 848, 1172
CviKI_1 RGCY 6 cut(s) 5, 250, 300, 464, 848, 1172
CviQI GTAC 3 cut(s) 110, 526, 1289
DdeI CTNAG 2 cut(s) 308, 1046
DinI GGCGCC 1 cut(s) 999
DrdI GACNNNNNNGTC 2 cut(s) 269, 1405
DseDI GACNNNNNNGTC 2 cut(s) 269, 1405
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
EciI GGCGGA 1 cut(s) 999
Eco105I TACGTA 1 cut(s) 1010
Eco31I GGTCTC 1 cut(s) 836
Eco47I GGWCC 1 cut(s) 970
Eco57I CTGAAG 1 cut(s) 1145
Eco72I CACGTG 1 cut(s) 1254
Eco88I CYCGRG 4 cut(s) 258, 317, 333, 937
EgeI GGCGCC 1 cut(s) 999
EheI GGCGCC 1 cut(s) 999
Esp3I CGTCTC 4 cut(s) 460, 720, 981, 1275
FaiI YATR 2 cut(s) 634, 1176
FaqI GGGAC 1 cut(s) 1456
FauI CCCGC 1 cut(s) 18
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 7 cut(s) 478, 846, 1001, 1082, 1184, 1433, 1436
FokI GGATG 2 cut(s) 316, 1376
Fsp4HI GCNGC 7 cut(s) 478, 846, 1001, 1082, 1184, 1433, 1436
FspBI CTAG 1 cut(s) 245
GlaI GCGC 3 cut(s) 323, 580, 999
GluI GCNGC 7 cut(s) 478, 846, 1001, 1082, 1184, 1433, 1436
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 1001
HapII CCGG 9 cut(s) 212, 342, 459, 512, 543, 605, 840, 849, 1337
HgaI GACGC 5 cut(s) 264, 998, 1048, 1174, 1199
HhaI GCGC 3 cut(s) 324, 581, 1000
Hin1I GRCGYC 4 cut(s) 117, 905, 998, 1400
Hin6I GCGC 3 cut(s) 322, 579, 998
HinP1I GCGC 3 cut(s) 322, 579, 998
HincII GTYRAC 2 cut(s) 314, 928
HindII GTYRAC 2 cut(s) 314, 928
HindIII AAGCTT 1 cut(s) 298
HpaII CCGG 9 cut(s) 212, 342, 459, 512, 543, 605, 840, 849, 1337
HphI GGTGA 8 cut(s) 49, 172, 225, 730, 758, 778, 1079, 1198
Hpy166II GTNNAC 6 cut(s) 314, 406, 572, 749, 854, 928
Hpy188I TCNGA 9 cut(s) 208, 391, 506, 601, 1043, 1164, 1353, 1398, 1481
Hpy8I GTNNAC 6 cut(s) 314, 406, 572, 749, 854, 928
HpyAV CCTTC 2 cut(s) 368, 821
HpyCH4III ACNGT 9 cut(s) 587, 597, 663, 742, 766, 932, 1210, 1282, 1297
HpyCH4V TGCA 1 cut(s) 1432
HpyF10VI GCNNNNNNNGC 1 cut(s) 1333
HpyF3I CTNAG 2 cut(s) 308, 1046
Hsp92I GRCGYC 4 cut(s) 117, 905, 998, 1400
HspAI GCGC 3 cut(s) 322, 579, 998
KasI GGCGCC 1 cut(s) 997
Kpn2I TCCGGA 1 cut(s) 458
KroI GCCGGC 1 cut(s) 1336
KroNI GCCGGC 1 cut(s) 1338
LmnI GCTCC 4 cut(s) 461, 661, 842, 1399
Lsp1109I GCAGC 5 cut(s) 857, 1068, 1170, 1444, 1447
LweI GCATC 4 cut(s) 58, 1078, 1096, 1245
MaeI CTAG 1 cut(s) 245
MflI RGATCY 6 cut(s) 357, 386, 436, 561, 731, 1226
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 3 cut(s) 223, 556, 1345
MluI ACGCGT 1 cut(s) 1191
Mly113I GGCGCC 1 cut(s) 998
MlyI GAGTC 8 cut(s) 160, 309, 320, 345, 387, 929, 1038, 1147
MmeI TCCRAC 6 cut(s) 231, 484, 624, 997, 1021, 1421
MroI TCCGGA 1 cut(s) 458
MroNI GCCGGC 1 cut(s) 1336
MseI TTAA 3 cut(s) 302, 612, 1200
MspI CCGG 9 cut(s) 212, 342, 459, 512, 543, 605, 840, 849, 1337
MspR9I CCNGG 2 cut(s) 212, 605
MvnI CGCG 6 cut(s) 13, 275, 324, 353, 992, 1193
MwoI GCNNNNNNNGC 1 cut(s) 1333
NaeI GCCGGC 1 cut(s) 1338
NarI GGCGCC 1 cut(s) 998
NciI CCSGG 2 cut(s) 212, 605
NgoMIV GCCGGC 1 cut(s) 1336
NlaIV GGNNCC 4 cut(s) 463, 563, 999, 1144
NmuCI GTSAC 7 cut(s) 37, 276, 766, 815, 932, 1150, 1187
NruI TCGCGA 1 cut(s) 353
PaeR7I CTCGAG 2 cut(s) 258, 317
PcsI WCGNNNNNNNCGW 6 cut(s) 114, 345, 378, 387, 1406, 1412
PdiI GCCGGC 1 cut(s) 1338
PfeI GAWTC 5 cut(s) 197, 345, 495, 1053, 1213
PflFI GACNNNGTC 2 cut(s) 622, 1402
PkrI GCNGC 7 cut(s) 479, 847, 1002, 1083, 1185, 1434, 1437
PleI GAGTC 8 cut(s) 160, 309, 320, 344, 386, 929, 1038, 1147
PluTI GGCGCC 1 cut(s) 1001
PmaCI CACGTG 1 cut(s) 1254
PmlI CACGTG 1 cut(s) 1254
PpsI GAGTC 8 cut(s) 160, 309, 320, 344, 386, 929, 1038, 1147
Ppu21I YACGTR 3 cut(s) 1010, 1254, 1448
PshAI GACNNNNGTC 1 cut(s) 449
PsiI TTATAA 1 cut(s) 1176
Psp1406I AACGTT 1 cut(s) 1376
PspCI CACGTG 1 cut(s) 1254
PspN4I GGNNCC 4 cut(s) 463, 563, 999, 1144
PspPI GGNCC 1 cut(s) 970
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 6 cut(s) 357, 386, 436, 561, 731, 1226
PsyI GACNNNGTC 2 cut(s) 622, 1402
RruI TCGCGA 1 cut(s) 353
RsaI GTAC 3 cut(s) 111, 527, 1290
RsaNI GTAC 3 cut(s) 110, 526, 1289
SalI GTCGAC 1 cut(s) 312
SaqAI TTAA 3 cut(s) 302, 612, 1200
SatI GCNGC 7 cut(s) 478, 846, 1001, 1082, 1184, 1433, 1436
Sau96I GGNCC 1 cut(s) 970
SchI GAGTC 8 cut(s) 160, 309, 320, 345, 387, 929, 1038, 1147
ScrFI CCNGG 2 cut(s) 212, 605
SduI GDGCHC 1 cut(s) 668
SfaNI GCATC 4 cut(s) 58, 1078, 1096, 1245
SfoI GGCGCC 1 cut(s) 999
Sfr274I CTCGAG 2 cut(s) 258, 317
SinI GGWCC 1 cut(s) 970
SlaI CTCGAG 2 cut(s) 258, 317
SmlI CTYRAG 5 cut(s) 258, 317, 468, 490, 949
SmoI CTYRAG 5 cut(s) 258, 317, 468, 490, 949
SnaBI TACGTA 1 cut(s) 1010
Sse9I AATT 3 cut(s) 223, 556, 1345
SsiI CCGC 8 cut(s) 11, 477, 684, 867, 984, 1001, 1119, 1146
SspDI GGCGCC 1 cut(s) 997
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 210, 603
TaaI ACNGT 9 cut(s) 587, 597, 663, 742, 766, 932, 1210, 1282, 1297
TaqII GACCGA 2 cut(s) 681, 958
TasI AATT 3 cut(s) 223, 556, 1345
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 480, 1003
TfiI GAWTC 5 cut(s) 197, 345, 495, 1053, 1213
Tru1I TTAA 3 cut(s) 302, 612, 1200
Tru9I TTAA 3 cut(s) 302, 612, 1200
TscAI CASTG 5 cut(s) 70, 572, 668, 1054, 1285
TseFI GTSAC 7 cut(s) 37, 276, 766, 815, 932, 1150, 1187
TseI GCWGC 5 cut(s) 845, 1081, 1183, 1432, 1435
Tsp45I GTSAC 7 cut(s) 37, 276, 766, 815, 932, 1150, 1187
TspDTI ATGAA 4 cut(s) 114, 216, 911, 1295
TspGWI ACGGA 3 cut(s) 350, 738, 744
TspRI CASTG 5 cut(s) 70, 572, 668, 1054, 1285
Tth111I GACNNNGTC 2 cut(s) 622, 1402
VpaK11BI GGWCC 1 cut(s) 970
XbaI TCTAGA 1 cut(s) 244
XhoI CTCGAG 2 cut(s) 258, 317
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 1 cut(s) 245
ZraI GACGTC 3 cut(s) 118, 906, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.