Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014903

Physical Location & Seq

Genomic Coordinates Forward (+)

58996297 .. 58996959

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0465300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTTTCATCAGTTACACTACACATGGCTTCATCCTCCTCCTAGCTGCTGCTTCTCTATTGGCAGTCAGCGACGCCAAAACCATTGTCGTTGGAGGGAGCGAAGGATGGCGTTTCGGCTTCAACTACACCGATTGGGTCTTCAAAAACAGCCCTTTTTACATAAATGACGAACTGGTGTTCAAGTATGATCCGCCAAGCGAGAACAACAGCGGCTACAGTGTCTACCTGCTGCCCAACCTGTGGAGCTACATCAAATGCGACTTCAGCAAGGCCAAGATGTTGGCCGGTCCAAACCAAGGCGGCGGCGAGGGGTTCAAGGTTGAGCTGAACCAGTGGAGGCCTTACTACTTTGCCAGTGGTGATAAAGATGGCTACAATTGCCAGGACGGGCTCATGAAGTTCTTTGCCGTGCCACTTCCTCATTGGAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0010033 GO:0010035 GO:0012505 GO:0016787 GO:0019538 GO:0030163 GO:0033993 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070001 GO:0070011 GO:0071704 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

145

Amino Acids

16.37

Weight (kDa)

5.57

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18490
fragaria_vesca	FvH4_5g12520
malus_domestica	MD14G1223600.v1.1 MD14G1223700.v1.1
prunus_persica	Prupe.5G218800_v2.0.a1
pyrus_communis	pycom06g18990 pycom14g18490
rosa_chinensis	RchiOBHm_Chr7g0184841
rosa_laevigata	RLG00000004950
rosa_roxburghii	Rroxscaffold_3G00269340
rosa_rugosa	Rorug06G0465300
rosa_samantha	Rh7AG077600 Rh7BG069700 Rh7CG070500 Rh7DG069900
rosa_wichuraiana	Rw7G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	4 cut(s)	194, 213, 303, 306
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	243, 299
AgsI	TTSAA	4 cut(s)	124, 145, 184, 319
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	3 cut(s)	47, 249, 328
AluI	AGCT	3 cut(s)	47, 249, 328
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	3 cut(s)	273, 285, 341
ApeKI	GCWGC	3 cut(s)	47, 50, 232
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	34, 37, 219
BccI	CCATC	2 cut(s)	102, 365
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	386
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	6 cut(s)	48, 51, 214, 233, 304, 307
BlsI	GCNGC	6 cut(s)	49, 52, 215, 234, 305, 308
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 299
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	3 cut(s)	180, 334, 357
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	33, 113
BseLI	CCNNNNNNNGG	2 cut(s)	243, 299
BseNI	ACTGG	3 cut(s)	180, 334, 357
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	34, 37, 219
BshFI	GGCC	3 cut(s)	275, 287, 343
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	243, 299
BsnI	GGCC	3 cut(s)	275, 287, 343
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	4 cut(s)	194, 213, 303, 306
BspANI	GGCC	3 cut(s)	275, 287, 343
BspHI	TCATGA	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	3 cut(s)	180, 334, 357
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	33, 113
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 381
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	34, 37, 219
BstV2I	GAAGAC	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	275, 287, 343
BtsCI	GGATG	2 cut(s)	33, 113
BtsIMutI	CAGTG	3 cut(s)	226, 341, 364
BveI	ACCTGC	1 cut(s)	237
CciI	TCATGA	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	83
CviAII	CATG	2 cut(s)	26, 397
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	29, 400
FaiI	YATR	4 cut(s)	27, 164, 189, 398
FatI	CATG	2 cut(s)	25, 396
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	6 cut(s)	48, 51, 214, 233, 304, 307
FokI	GGATG	2 cut(s)	20, 120
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	6 cut(s)	48, 51, 214, 233, 304, 307
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	6 cut(s)	48, 51, 214, 233, 304, 307
HaeIII	GGCC	3 cut(s)	275, 287, 343
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	29, 400
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 381
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	29, 400
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	99, 246
LpnPI	CCDG	8 cut(s)	161, 242, 254, 301, 347, 370, 371, 398
Lsp1109I	GCAGC	3 cut(s)	34, 37, 219
MaeI	CTAG	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	133
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	6 cut(s)	47, 50, 89, 304, 333, 432
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	267, 381
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	29, 400
PagI	TCATGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	6 cut(s)	49, 52, 215, 234, 305, 308
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	290
SatI	GCNGC	6 cut(s)	48, 51, 214, 233, 304, 307
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	6 cut(s)	49, 231, 243, 251, 324, 330
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	1 cut(s)	379
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	4 cut(s)	194, 213, 303, 306
SspMI	CTAG	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	221
TasI	AATT	1 cut(s)	379
TauI	GCSGC	3 cut(s)	216, 306, 309
TscAI	CASTG	3 cut(s)	226, 341, 364
TseI	GCWGC	3 cut(s)	47, 50, 232
TspDTI	ATGAA	2 cut(s)	22, 413
TspRI	CASTG	3 cut(s)	226, 341, 364
Van91I	CCANNNNNTGG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.