AT3G18800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017958
Physical Location & Seq
Forward (+)
6479587 .. 6480463
877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18800.1

Sequence Viewer

Length: 594 bp
ATGGCGGACTACGACGACGAAATTGACCAGAATAACCAACCTTTCATCCCCAAAGAAACTGCTCTACAAGCACTAAACTCAATAATCCAGCTCCACTTCGAGAAAACCTTAGAGAAGAAACGAGCCATTGACCACCAGAAGAAGAAGCTCCACAAGCTATTTCAGCTCTTCTTCATCTTCCTCGCCGTAATCTTCTTCTCCCTCTCTCAACCCTCAGGTCGTCTTCACTGCCGCCATTGCTGGGCACCCATCTGCCTCCTATCCTTCTCTCACCTCTTCTTCTACGTCTCCGTCGCTCAAACTCTCCGTTGCATCAACGGCTTCAAGTACCAGCGTCGCTGCCATAAGCTCACTCTCGGTCTCGCCACTCACAAGCTCCGTTTCATCAAGTCAAGAATCGCTGCCGGAGATTTCCTCGGTGGAGGCGACGGTGATGAGGCCTCTGCTGCTGCTTGGGATCTGGAAGTTCCGTATCAAGAACCACCTGATAGCTACTTTGGCAAGTTTAAGAGAAATTGGGCTCTCTATTTTGGGTTCTTGATCCTTCTTTACACTTTCATGATCTCTTTCTCTGTCGTTATCCTCTGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.87

Weight (kDa)

9.01

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18800
fragaria_vesca FvH4_1g23610
malus_domestica MD01G1016600.v1.1
prunus_persica Prupe.6G162500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0119191
rosa_laevigata RLG00000018450
rosa_multiflora Rmu_sc0000184.1_g000011
rosa_roxburghii Rroxscaffold_2G00124460
rosa_rugosa Rorug02G0220800
rosa_samantha Rh2AG278700
rosa_wichuraiana Rw2G022150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 2 cut(s) 5, 232
AclWI GGATC 2 cut(s) 465, 535
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 325
AluBI AGCT 7 cut(s) 91, 148, 157, 166, 349, 376, 492
AluI AGCT 7 cut(s) 91, 148, 157, 166, 349, 376, 492
Alw26I GTCTC 2 cut(s) 292, 365
AlwI GGATC 2 cut(s) 465, 535
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 4 cut(s) 339, 401, 446, 449
AsuHPI GGTGA 2 cut(s) 263, 443
AxyI CCTNAGG 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 523
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 4 cut(s) 326, 388, 433, 436
BccI CCATC 1 cut(s) 257
BceAI ACGGC 2 cut(s) 170, 334
BcoDI GTCTC 2 cut(s) 292, 365
BisI GCNGC 5 cut(s) 232, 340, 402, 447, 450
BlsI GCNGC 5 cut(s) 233, 341, 403, 448, 451
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse21I CCTNAGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 4 cut(s) 326, 388, 433, 436
BseYI CCCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 440
BshNI GGYRCC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 2 cut(s) 292, 365
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 440
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 247, 523
Bsp143I GATC 3 cut(s) 457, 540, 561
BspACI CCGC 2 cut(s) 5, 232
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 1 cut(s) 227
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 2 cut(s) 465, 535
BspQI GCTCTTC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 3 cut(s) 457, 540, 561
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 173, 281
BstDEI CTNAG 2 cut(s) 109, 214
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 3 cut(s) 460, 543, 564
BstMAI GTCTC 2 cut(s) 292, 365
BstMBI GATC 3 cut(s) 457, 540, 561
BstMWI GCNNNNNNNGC 7 cut(s) 68, 154, 163, 237, 318, 446, 498
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 4 cut(s) 326, 388, 433, 436
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu36I CCTNAGG 1 cut(s) 214
BsuRI GGCC 1 cut(s) 440
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
CciI TCATGA 1 cut(s) 558
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 559
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 109, 214
DpnI GATC 3 cut(s) 459, 542, 563
DpnII GATC 3 cut(s) 457, 540, 561
Eam1104I CTCTTC 2 cut(s) 173, 281
EarI CTCTTC 2 cut(s) 173, 281
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 523
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 1 cut(s) 562
FaiI YATR 2 cut(s) 345, 560
FatI CATG 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 232, 340, 402, 447, 450
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 5 cut(s) 232, 340, 402, 447, 450
GluI GCNGC 5 cut(s) 232, 340, 402, 447, 450
GsaI CCCAGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 440
HapII CCGG 1 cut(s) 405
HgaI GACGC 1 cut(s) 323
Hin1II CATG 1 cut(s) 562
HinfI GANTC 1 cut(s) 396
HpaII CCGG 1 cut(s) 405
HphI GGTGA 2 cut(s) 263, 443
Hpy188I TCNGA 1 cut(s) 593
Hpy188III TCNNGA 6 cut(s) 100, 393, 461, 476, 538, 559
Hpy99I CGWCG 5 cut(s) 17, 20, 296, 339, 431
HpyAV CCTTC 2 cut(s) 274, 554
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 154, 163, 237, 318, 446, 498
HpyF3I CTNAG 2 cut(s) 109, 214
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 562
Kzo9I GATC 3 cut(s) 457, 540, 561
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 3 cut(s) 96, 153, 381
LpnPI CCDG 9 cut(s) 41, 101, 149, 201, 226, 344, 418, 446, 498
Lsp1109I GCAGC 4 cut(s) 326, 388, 433, 436
LweI GCATC 1 cut(s) 321
MaeII ACGT 1 cut(s) 285
MalI GATC 3 cut(s) 459, 542, 563
MboI GATC 3 cut(s) 457, 540, 561
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 2 cut(s) 247, 523
MluCI AATT 2 cut(s) 21, 514
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 557
MspI CCGG 1 cut(s) 405
MwoI GCNNNNNNNGC 7 cut(s) 68, 154, 163, 237, 318, 446, 498
NdeII GATC 3 cut(s) 457, 540, 561
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 1 cut(s) 246
PagI TCATGA 1 cut(s) 558
PceI AGGCCT 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 1 cut(s) 396
PkrI GCNGC 5 cut(s) 233, 341, 403, 448, 451
PspFI CCCAGC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 557
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 5 cut(s) 232, 340, 402, 447, 450
Sau3AI GATC 3 cut(s) 457, 540, 561
SduI GDGCHC 2 cut(s) 247, 523
SfaNI GCATC 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 557
Sse9I AATT 2 cut(s) 21, 514
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 2 cut(s) 5, 232
StuI AGGCCT 1 cut(s) 440
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 99
TaqII GACCGA 1 cut(s) 347
TasI AATT 2 cut(s) 21, 514
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 233
TseI GCWGC 4 cut(s) 339, 401, 446, 449
TspDTI ATGAA 4 cut(s) 34, 163, 373, 547
TspGWI ACGGA 4 cut(s) 280, 296, 368, 459
TspRI CASTG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.