Prupe.6G162500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017958
Physical Location & Seq
Reverse (-)
15387815 .. 15388384
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G162500.1

Sequence Viewer

Length: 570 bp
ATGGCAGACTACGAAACCCACCACCACTCATCAATCCCAAAAGAGACAGCTCTGCAAGCCCTAAACACCATCATCCAGCTTCACTTCGAGAAGACCCTCGAGAAGAAGAGGTCCATAGACCTCCAGAAGAAGGAGCTCCACAAGCTCTTCATCCTGTTCTTCATCTTCCTCAGCCTCATCTTCTTTGCCGAGGCCCAGTCCTCGAGGCTCCAATGCCGCCACTGCTGGGTCCCAATCGTCCTCCTCTCCCTGGCCCACCTCATCTTCTACGTGGCAGTTGCTCAGACCCTGCGCTGCATCAATGGGTTCAAGTACCAGAGGCGCTGCCACAAGCTAACACTTGGGCTGGCCACTGAGAAGCTGAGGGAGATGAAGATGAGGCTTAGTAGCGCTAATGGCGGTGGAGGGGACTTTGATGGGGTTTCTGAGAATGAGTTTGAGATTCATTATCAAGAGCCTCCTGAGAGTTACTTTGGTAAGTTTAAGAGGAATTGGGCTTTGCATTTTGGCTTCTTGATTGTCATTTATGGCTTCATGGTGGCTTCCTCTGTTGTTCTCCTCTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.93

Weight (kDa)

8.97

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18800
fragaria_vesca FvH4_1g23610
malus_domestica MD01G1016600.v1.1
prunus_persica Prupe.6G162500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0119191
rosa_laevigata RLG00000018450
rosa_multiflora Rmu_sc0000184.1_g000011
rosa_roxburghii Rroxscaffold_2G00124460
rosa_rugosa Rorug02G0220800
rosa_samantha Rh2AG278700
rosa_wichuraiana Rw2G022150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 202
AciI CCGC 2 cut(s) 217, 399
AcoI YGGCCR 1 cut(s) 348
AfaI GTAC 1 cut(s) 314
AfeI AGCGCT 1 cut(s) 391
AfiI CCNNNNNNNGG 3 cut(s) 130, 226, 250
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 6 cut(s) 50, 79, 136, 145, 334, 361
AluI AGCT 6 cut(s) 50, 79, 136, 145, 334, 361
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 289
Ama87I CYCGRG 2 cut(s) 98, 202
Aor51HI AGCGCT 1 cut(s) 391
AoxI GGCC 3 cut(s) 192, 252, 348
ApeKI GCWGC 2 cut(s) 294, 324
AspLEI GCGC 3 cut(s) 294, 324, 392
AspS9I GGNCC 4 cut(s) 111, 193, 229, 253
AvaI CYCGRG 2 cut(s) 98, 202
AvaII GGWCC 2 cut(s) 111, 229
BalI TGGCCA 1 cut(s) 350
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 2 cut(s) 170, 362
BbvI GCAGC 2 cut(s) 281, 311
BccI CCATC 2 cut(s) 77, 410
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 38
BfoI RGCGCY 2 cut(s) 325, 393
BisI GCNGC 3 cut(s) 217, 295, 325
BlsI GCNGC 3 cut(s) 218, 296, 326
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 2 cut(s) 111, 229
BmeT110I CYCGRG 2 cut(s) 98, 202
BmgT120I GGNCC 4 cut(s) 111, 193, 229, 253
BmiI GGNNCC 3 cut(s) 209, 230, 231
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 2 cut(s) 170, 362
BsaAI YACGTR 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 189, 249
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 226, 250
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 189, 249
BseGI GGATG 2 cut(s) 72, 150
BseLI CCNNNNNNNGG 3 cut(s) 130, 226, 250
BseMII CTCAG 6 cut(s) 184, 296, 345, 353, 417, 453
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 2 cut(s) 233, 548
BseXI GCAGC 2 cut(s) 281, 311
BseYI CCCAGC 1 cut(s) 225
BshFI GGCC 3 cut(s) 194, 254, 350
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 98, 202
BslFI GGGAC 2 cut(s) 215, 422
BslI CCNNNNNNNGG 3 cut(s) 130, 226, 250
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 215, 422
BsnI GGCC 3 cut(s) 194, 254, 350
BsoBI CYCGRG 2 cut(s) 98, 202
Bsp1286I GDGCHC 1 cut(s) 138
BspACI CCGC 2 cut(s) 217, 399
BspANI GGCC 3 cut(s) 194, 254, 350
BspCNI CTCAG 6 cut(s) 183, 295, 346, 354, 418, 454
BspLI GGNNCC 3 cut(s) 209, 230, 231
BspQI GCTCTTC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 189, 249
Bst2UI CCWGG 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 101, 152
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 57, 348
BstDEI CTNAG 7 cut(s) 170, 282, 354, 362, 383, 426, 462
BstF5I GGATG 2 cut(s) 72, 150
BstH2I RGCGCY 2 cut(s) 325, 393
BstHHI GCGC 3 cut(s) 294, 324, 392
BstMAI GTCTC 1 cut(s) 38
BstMWI GCNNNNNNNGC 4 cut(s) 56, 142, 222, 396
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 281, 311
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 3 cut(s) 194, 254, 350
BtsCI GGATG 2 cut(s) 72, 150
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 220, 351
Cac8I GCNNGC 2 cut(s) 57, 348
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 3 cut(s) 294, 324, 392
Cfr13I GGNCC 4 cut(s) 111, 193, 229, 253
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 535
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 7 cut(s) 170, 282, 354, 362, 383, 426, 462
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 101, 152
EarI CTCTTC 2 cut(s) 101, 152
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 111, 229
Eco47III AGCGCT 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 136
Eco88I CYCGRG 2 cut(s) 98, 202
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 1 cut(s) 538
FaiI YATR 3 cut(s) 116, 528, 536
FaqI GGGAC 2 cut(s) 215, 422
FatI CATG 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 217, 295, 325
FokI GGATG 2 cut(s) 59, 137
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 3 cut(s) 217, 295, 325
GlaI GCGC 3 cut(s) 293, 323, 391
GluI GCNGC 3 cut(s) 217, 295, 325
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 107
HaeII RGCGCY 2 cut(s) 325, 393
HaeIII GGCC 3 cut(s) 194, 254, 350
HhaI GCGC 3 cut(s) 294, 324, 392
Hin1II CATG 1 cut(s) 538
Hin6I GCGC 3 cut(s) 292, 322, 390
HinP1I GCGC 3 cut(s) 292, 322, 390
HinfI GANTC 1 cut(s) 442
Hpy188I TCNGA 2 cut(s) 285, 427
Hpy188III TCNNGA 6 cut(s) 88, 100, 124, 452, 461, 514
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 55, 297, 502
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 142, 222, 396
HpyF3I CTNAG 7 cut(s) 170, 282, 354, 362, 383, 426, 462
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 538
HspAI GCGC 3 cut(s) 292, 322, 390
KflI GGGWCCC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 3 cut(s) 133, 141, 213
Lsp1109I GCAGC 2 cut(s) 281, 311
LweI GCATC 1 cut(s) 306
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 1 cut(s) 490
MluNI TGGCCA 1 cut(s) 350
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 4 cut(s) 56, 142, 222, 396
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 3 cut(s) 209, 230, 231
NmeAIII GCCGAG 1 cut(s) 214
PaeR7I CTCGAG 2 cut(s) 98, 202
PciSI GCTCTTC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 442
PkrI GCNGC 3 cut(s) 218, 296, 326
Ppu21I YACGTR 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 209, 230, 231
PspPI GGNCC 4 cut(s) 111, 193, 229, 253
PspPPI RGGWCCY 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 289
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 3 cut(s) 217, 295, 325
Sau96I GGNCC 4 cut(s) 111, 193, 229, 253
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 1 cut(s) 306
Sfr274I CTCGAG 2 cut(s) 98, 202
SinI GGWCC 2 cut(s) 111, 229
SlaI CTCGAG 2 cut(s) 98, 202
SmlI CTYRAG 2 cut(s) 98, 202
SmoI CTYRAG 2 cut(s) 98, 202
Sse9I AATT 1 cut(s) 490
SsiI CCGC 2 cut(s) 217, 399
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 249
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 87, 99, 203
TasI AATT 1 cut(s) 490
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 2 cut(s) 227, 358
TseI GCWGC 2 cut(s) 294, 324
TspDTI ATGAA 5 cut(s) 139, 151, 386, 434, 523
TspRI CASTG 2 cut(s) 227, 358
VpaK11BI GGWCC 2 cut(s) 111, 229
XhoI CTCGAG 2 cut(s) 98, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.