AT3G22510

pre-rRNA-processing protein TSR2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016499
Physical Location & Seq
Forward (+)
7973394 .. 7974395
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22510.1

Sequence Viewer

Length: 375 bp
ATGGGAACTGGTGGAATAACGTCCAACGCTCACGTGGTCTCTCCCACGTGGCATCACAAGCACGTGCCTCCTATGGATGACGACTCTGTTCTTCAAAGAGACATCGGAGAGCTTCTTTCACGGTGGGGCGGGCTTCAAATGGCCGTAAAGAACCAGTGGGGAGGCCATGATTCTCTCAAGAAATCTCAAGAGCTAGCTCACAATCTTTTTCATCTCATCTCTCAATCAAATGTGATTACGGTGGAAGAAATAGAGAATTTGCTACATGAAAGCTTGCTTCTTTCTTTCAACACAGAGATTGAAGATGGCAGCATTGAAGAGGTAGCTGAACAATTGATGATACTCCATGAAGAACATTTACGTGGGACTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

124

Amino Acids

13.9

Weight (kDa)

5.07

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 32 - 110 2.1e-23 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22510
malus_domestica MD16G1195200.v1.1
prunus_persica Prupe.1G015200_v2.0.a1 Prupe.1G015200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416031
rosa_laevigata RLG00000008023
rosa_multiflora Rmu_sc0007573.1_g000001
rosa_roxburghii Rroxscaffold_5G00359870
rosa_rugosa Rorug04G0137500
rosa_samantha Rh4AG199900 Rh4BG197400 Rh4CG211100 Rh4DG197600
rosa_wichuraiana Rw4G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 256
AcvI CACGTG 3 cut(s) 34, 48, 64
AgsI TTSAA 5 cut(s) 95, 137, 289, 302, 317
AluBI AGCT 5 cut(s) 112, 193, 197, 273, 326
AluI AGCT 5 cut(s) 112, 193, 197, 273, 326
Alw26I GTCTC 2 cut(s) 43, 93
AoxI GGCC 2 cut(s) 141, 163
ApeKI GCWGC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 256
AsuNHI GCTAGC 1 cut(s) 193
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BbrPI CACGTG 3 cut(s) 34, 48, 64
BbvI GCAGC 1 cut(s) 321
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 43, 93
BfaI CTAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
BmsI GCATC 1 cut(s) 61
BmtI GCTAGC 1 cut(s) 197
BpuEI CTTGAG 2 cut(s) 161, 171
BsaAI YACGTR 4 cut(s) 34, 48, 64, 362
BsaI GGTCTC 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 13, 154
BseGI GGATG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 13, 154
BseXI GCAGC 1 cut(s) 321
BshFI GGCC 2 cut(s) 143, 165
BsmAI GTCTC 2 cut(s) 43, 93
BsnI GGCC 2 cut(s) 143, 165
Bso31I GGTCTC 1 cut(s) 43
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 143, 165
BspOI GCTAGC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 13, 154
Bst4CI ACNGT 2 cut(s) 123, 241
Bst6I CTCTTC 1 cut(s) 312
BstBAI YACGTR 4 cut(s) 34, 48, 64, 362
BstC8I GCNNGC 3 cut(s) 131, 195, 275
BstF5I GGATG 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 43, 93
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 143, 165
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 131, 195, 275
CviAII CATG 3 cut(s) 167, 266, 347
CviJI RGCY 8 cut(s) 112, 133, 143, 165, 193, 197, 273, 326
CviKI_1 RGCY 8 cut(s) 112, 133, 143, 165, 193, 197, 273, 326
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 43
Eco72I CACGTG 3 cut(s) 34, 48, 64
FaeI CATG 3 cut(s) 170, 269, 350
FaiI YATR 4 cut(s) 74, 168, 267, 348
FatI CATG 3 cut(s) 166, 265, 346
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 310
HaeIII GGCC 2 cut(s) 143, 165
Hin1II CATG 3 cut(s) 170, 269, 350
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 3 cut(s) 83, 170, 367
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 178, 188
HpyCH4III ACNGT 2 cut(s) 123, 241
HpyCH4IV ACGT 5 cut(s) 20, 33, 47, 63, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpySE526I ACGT 5 cut(s) 20, 33, 47, 63, 361
Hsp92II CATG 3 cut(s) 170, 269, 350
LpnPI CCDG 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 194
MaeII ACGT 5 cut(s) 20, 33, 47, 63, 361
MboII GAAGA 5 cut(s) 83, 257, 314, 329, 362
MfeI CAATTG 1 cut(s) 332
MluCI AATT 2 cut(s) 256, 332
MlyI GAGTC 2 cut(s) 77, 361
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 78, 155, 313
MseI TTAA 1 cut(s) 373
MslI CAYNNNNRTG 1 cut(s) 360
MunI CAATTG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 58
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 170, 269, 350
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 2 cut(s) 77, 361
PmaCI CACGTG 3 cut(s) 34, 48, 64
PmlI CACGTG 3 cut(s) 34, 48, 64
PpsI GAGTC 2 cut(s) 77, 361
Ppu21I YACGTR 4 cut(s) 34, 48, 64, 362
PspCI CACGTG 3 cut(s) 34, 48, 64
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 1 cut(s) 310
SchI GAGTC 2 cut(s) 77, 361
SfaNI GCATC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 176, 186
SmoI CTYRAG 2 cut(s) 176, 186
Sse9I AATT 2 cut(s) 256, 332
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 123, 241
TaiI ACGT 5 cut(s) 23, 36, 50, 66, 364
TasI AATT 2 cut(s) 256, 332
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 1 cut(s) 161
TseI GCWGC 1 cut(s) 309
TspDTI ATGAA 3 cut(s) 200, 282, 363
TspRI CASTG 1 cut(s) 161
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.