Rmu_sc0007573.1_g000001

pre-rRNA-processing protein TSR2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007573.1
OG0016499
Physical Location & Seq
Reverse (-)
1931 .. 2696
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007573.1_g000001.1.cds

Sequence Viewer

Length: 393 bp
atggaatccatcagcggaggacgtgtgagtagtagcactatcaacaatacaccttccacagcagatcaaaaggtggctgttgttgaccccatatctcttgatttccgaaaagccatctcgtcggttctttcgcggtggaatggcctcgaaatggctgtccagaaccagtggggtggccgagactccacccacaaagctcagcagctctctgccgatattctctcttggttctctcaatccaaagcagcaccacgttacgtggaagatctagaaaatttgctccatgaacgtatgattctctccttcaacacagacattgaagatgggagcattgaggaggtggctgagcaattgatgattgtacatgaggaatacttgcatggaaaccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

130

Amino Acids

14.51

Weight (kDa)

4.84

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22510
malus_domestica MD16G1195200.v1.1
prunus_persica Prupe.1G015200_v2.0.a1 Prupe.1G015200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416031
rosa_laevigata RLG00000008023
rosa_multiflora Rmu_sc0007573.1_g000001
rosa_roxburghii Rroxscaffold_5G00359870
rosa_rugosa Rorug04G0137500
rosa_samantha Rh4AG199900 Rh4BG197400 Rh4CG211100 Rh4DG197600
rosa_wichuraiana Rw4G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 133
AciI CCGC 2 cut(s) 15, 133
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 274
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 307, 320
AjiI CACGTC 1 cut(s) 23
AluBI AGCT 2 cut(s) 197, 205
AluI AGCT 2 cut(s) 197, 205
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 2 cut(s) 142, 175
ApeKI GCWGC 2 cut(s) 202, 245
ApoI RAATTY 1 cut(s) 274
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
BbvI GCAGC 2 cut(s) 214, 257
BccI CCATC 3 cut(s) 17, 122, 317
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 265
BisI GCNGC 2 cut(s) 203, 246
BlpI GCTNAGC 2 cut(s) 198, 345
BlsI GCNGC 2 cut(s) 204, 247
BmgBI CACGTC 1 cut(s) 23
Bpu1102I GCTNAGC 2 cut(s) 198, 345
BsaAI YACGTR 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 212, 336
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 214, 257
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 144, 177
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 2 cut(s) 144, 177
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 2 cut(s) 64, 265
Bsp1720I GCTNAGC 2 cut(s) 198, 345
BspACI CCGC 2 cut(s) 15, 133
BspANI GGCC 2 cut(s) 144, 177
BspCNI CTCAG 2 cut(s) 211, 337
BspFNI CGCG 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 1 cut(s) 166
BssMI GATC 2 cut(s) 64, 265
BstAUI TGTACA 1 cut(s) 361
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 198, 345
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 2 cut(s) 67, 268
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 64, 265
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 214, 257
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 2 cut(s) 144, 177
BtrI CACGTC 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 173
Csp6I GTAC 1 cut(s) 362
CviAII CATG 3 cut(s) 284, 365, 380
CviJI RGCY 8 cut(s) 77, 113, 144, 155, 177, 197, 205, 344
CviKI_1 RGCY 8 cut(s) 77, 113, 144, 155, 177, 197, 205, 344
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 2 cut(s) 198, 345
DpnI GATC 2 cut(s) 66, 267
DpnII GATC 2 cut(s) 64, 265
EaeI YGGCCR 1 cut(s) 175
FaeI CATG 3 cut(s) 287, 368, 383
FaiI YATR 5 cut(s) 92, 285, 293, 366, 381
FatI CATG 3 cut(s) 283, 364, 379
Fnu4HI GCNGC 2 cut(s) 203, 246
Fsp4HI GCNGC 2 cut(s) 203, 246
FspBI CTAG 1 cut(s) 269
GluI GCNGC 2 cut(s) 203, 246
HaeIII GGCC 2 cut(s) 144, 177
Hin1II CATG 3 cut(s) 287, 368, 383
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 3 cut(s) 5, 182, 295
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 3 cut(s) 98, 160, 269
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 63, 313
HpyCH4IV ACGT 4 cut(s) 22, 253, 258, 289
HpyCH4V TGCA 1 cut(s) 379
HpyF3I CTNAG 2 cut(s) 198, 345
HpySE526I ACGT 4 cut(s) 22, 253, 258, 289
Hsp92II CATG 3 cut(s) 287, 368, 383
Kzo9I GATC 2 cut(s) 64, 265
LmnI GCTCC 2 cut(s) 285, 327
LpnPI CCDG 2 cut(s) 173, 179
Lsp1109I GCAGC 2 cut(s) 214, 257
MaeI CTAG 1 cut(s) 269
MaeII ACGT 4 cut(s) 22, 253, 258, 289
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 66, 267
MboI GATC 2 cut(s) 64, 265
MboII GAAGA 2 cut(s) 275, 332
MfeI CAATTG 1 cut(s) 350
MflI RGATCY 1 cut(s) 265
MluCI AATT 2 cut(s) 274, 350
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 5 cut(s) 11, 155, 328, 331, 361
MseI TTAA 1 cut(s) 391
MspA1I CMGCKG 1 cut(s) 15
MunI CAATTG 1 cut(s) 350
MvnI CGCG 1 cut(s) 133
NdeII GATC 2 cut(s) 64, 265
NlaIII CATG 3 cut(s) 287, 368, 383
NmeAIII GCCGAG 1 cut(s) 203
PfeI GAWTC 2 cut(s) 5, 295
PkrI GCNGC 2 cut(s) 204, 247
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 259
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 2 cut(s) 203, 246
Sau3AI GATC 2 cut(s) 64, 265
SchI GAGTC 1 cut(s) 176
SetI ASST 9 cut(s) 25, 55, 75, 199, 207, 256, 261, 292, 342
Sse9I AATT 2 cut(s) 274, 350
SsiI CCGC 2 cut(s) 15, 133
SspMI CTAG 1 cut(s) 269
TaiI ACGT 4 cut(s) 25, 256, 261, 292
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 274, 350
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 2 cut(s) 5, 295
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TscAI CASTG 1 cut(s) 173
TseI GCWGC 2 cut(s) 202, 245
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 173
XapI RAATTY 1 cut(s) 274
XbaI TCTAGA 1 cut(s) 268
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.