MD16G1195200.v1.1

pre-rRNA-processing protein TSR2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016499
Physical Location & Seq
Forward (+)
17386496 .. 17387848
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1195200.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGGATCCATCAACGGTGGACGTGTGATAACAACTTCATCATCATCTATCGTAGAAAGGTCCCATGACCATGATCGTTTGCGAGAAGGCGTGTCGATGGTTTTGTCACAATGGAATGGCCTAGAAATGGCCGTCCAGAACCAATGGGGTGGCTGGGACTCCACCCACAAAGCTCAACAACTCTCTGCCGATATTCTCTCTTGGTTCTCTCAATCTAAAGCGCCACGGTACGTGGAAGATTTAGAAAATTTGCTCCACGAACGTATGCTTCTCTCTTTCAACACAGATATTGAGGATGGAAGCATCGAGGAGGTGGCAGAACAATTGATGATTGTACATGACGAATACTTGCATGGAAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

4.82

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 28 - 107 5.3e-25 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22510
malus_domestica MD16G1195200.v1.1
prunus_persica Prupe.1G015200_v2.0.a1 Prupe.1G015200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416031
rosa_laevigata RLG00000008023
rosa_multiflora Rmu_sc0007573.1_g000001
rosa_roxburghii Rroxscaffold_5G00359870
rosa_rugosa Rorug04G0137500
rosa_samantha Rh4AG199900 Rh4BG197400 Rh4CG211100 Rh4DG197600
rosa_wichuraiana Rw4G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 2 cut(s) 230, 336
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 1 cut(s) 280
AjiI CACGTC 1 cut(s) 23
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 118, 129
ApoI RAATTY 1 cut(s) 247
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 60
AvaII GGWCC 1 cut(s) 60
BamHI GGATCC 1 cut(s) 5
BccI CCATC 3 cut(s) 17, 91, 290
BceAI ACGGC 1 cut(s) 116
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 7, 62
BmsI GCATC 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 323
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 2 cut(s) 120, 131
BslFI GGGAC 2 cut(s) 46, 170
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 46, 170
BsnI GGCC 2 cut(s) 120, 131
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 2 cut(s) 5, 73
BspANI GGCC 2 cut(s) 120, 131
BspLI GGNNCC 2 cut(s) 7, 62
BspPI GGATC 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 5, 73
Bst4CI ACNGT 2 cut(s) 17, 228
BstAUI TGTACA 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 232
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 8, 76
BstMBI GATC 2 cut(s) 5, 73
BstX2I RGATCY 1 cut(s) 5
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 2 cut(s) 120, 131
BtgI CCRYGG 1 cut(s) 224
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 301
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 229, 335
CviAII CATG 4 cut(s) 65, 71, 338, 353
CviJI RGCY 4 cut(s) 120, 131, 153, 173
CviKI_1 RGCY 4 cut(s) 120, 131, 153, 173
CviQI GTAC 2 cut(s) 229, 335
DpnI GATC 2 cut(s) 7, 75
DpnII GATC 2 cut(s) 5, 73
EaeI YGGCCR 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 60
FaeI CATG 4 cut(s) 68, 74, 341, 356
FaiI YATR 5 cut(s) 66, 72, 266, 339, 354
FaqI GGGAC 2 cut(s) 46, 170
FatI CATG 4 cut(s) 64, 70, 337, 352
FokI GGATG 1 cut(s) 308
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 2 cut(s) 120, 131
HhaI GCGC 1 cut(s) 223
Hin1II CATG 4 cut(s) 68, 74, 341, 356
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 17, 228
HpyCH4IV ACGT 3 cut(s) 22, 231, 262
HpyCH4V TGCA 1 cut(s) 352
HpySE526I ACGT 3 cut(s) 22, 231, 262
Hsp92II CATG 4 cut(s) 68, 74, 341, 356
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 2 cut(s) 5, 73
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 2 cut(s) 139, 149
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 122
MaeII ACGT 3 cut(s) 22, 231, 262
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 7, 75
MboI GATC 2 cut(s) 5, 73
MboII GAAGA 1 cut(s) 248
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 1 cut(s) 5
MluCI AATT 2 cut(s) 247, 323
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 3 cut(s) 286, 301, 304
MslI CAYNNNNRTG 1 cut(s) 69
MunI CAATTG 1 cut(s) 323
NdeII GATC 2 cut(s) 5, 73
NlaIII CATG 4 cut(s) 68, 74, 341, 356
NlaIV GGNNCC 2 cut(s) 7, 62
NmuCI GTSAC 1 cut(s) 105
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 7, 62
PspPI GGNCC 1 cut(s) 60
PspPPI RGGWCCY 1 cut(s) 60
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 2 cut(s) 230, 336
RsaNI GTAC 2 cut(s) 229, 335
RseI CAYNNNNRTG 1 cut(s) 69
Sau3AI GATC 2 cut(s) 5, 73
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 1 cut(s) 152
SetI ASST 6 cut(s) 25, 62, 175, 234, 265, 315
SfaNI GCATC 1 cut(s) 312
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 2 cut(s) 247, 323
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 17, 228
TaiI ACGT 3 cut(s) 25, 234, 265
TaqI TCGA 2 cut(s) 95, 306
TasI AATT 2 cut(s) 247, 323
TatI WGTACW 1 cut(s) 334
TseFI GTSAC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 247
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.