AT3G23080

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007139
Physical Location & Seq
Reverse (-)
8207287 .. 8209329
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23080.2

Sequence Viewer

Length: 1260 bp
ATGGATATTTTCATGGATTTCTTCAATAAACCTTCTGTTACAGAGACATTCGTCGACGTTTTGCTATGTGCAGTTCCGATTTGGGTCACTGTTATGATCGGGCTTCTGATCGGTTGGTCTTGGCGTCCTAGATGGACTAGCTTGGTTTATTTAGGTTTCCGTTCTAAGCTTCGGTTTCTATGTACTGTTCCTCCTGGATTTGGTGCTCGTCGTATTTGGCTTGCTTTCACCGCTCTCTCTGCTTTTTCCGTTTGTTCAACCTCCAATAAATCCTCGGTTAATAACGGTTCCTCTAAACCGGTCGAAGAAGAAGCATTTTCACGAGCTAGTGATAAAGTTACAGAGAAAGAGAAAGATGTTGTGACAGAGAAGGATTTAGAGCATTTGTTGCATCTGCTTGAAGCTGGAAATGCTAGTTTTGAGTGGCAATCTATGATGGATAAGTCTACTCCGAATATGAGCTATCAAGCTTGGCGTCATGAGCCTGAGATAGGTCCTGTTGTTTATCGTAGTCGAACTGTTTTTGAGGATGTAACACCAGACATTGTTAGGGATTTCTTCTGGGACGATGAGTTTCGACCTAAATGGGATACTATGCTTGCTTACTTCAAAACTTTAGAGGAAGATCCTAAGACAGGAACTACCATTGTTCATTGGATTAAAAAGTTCCCATTCTTCTGTAGTGACCGGGAATACATCATTGGTAGGAGAATATGGGAATCTGGAAGAAAATATTATGCTGTGACTAAGGGAGTACCGTATAAAGCTTTATCAAAGCGTGATAAGCCGAGGCGAGTCGAACTTTATTTCTCAAGTTGGATTATCAATGCAGTTGAATCAAGAAAAGGTGATGGGCAAATGACAGCTTGTGAAGTCTCTCTTGTTCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGAGTCCGTCATGGCATGTGGGGAGCTGTAAAGAAGCTAAACTCTGGCTTAAGGGCGTACCAAAGCGCTAGAAAACCTGGGACGTCGCTCTCACGGAGTGCGCAGATGGCAAGTATCACCACAAAGCTGAACATGGATTTGGTGGAAACATCTGGGGCAGAGGACGAAGAGAGAGGACGAGCAGTAGAGAATGCGAGGAAACAAAATGATCAGTTCGGTGTAGACTGGAAATGGATCGTTGTAGGAGGAGTAGCTTTGGCTTGTGGGCTTCATTCTAGTGCTATAGGTAAGGCGTTAATGGTTGGAGCTGGACAGAGACTTGCTCGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

419

Amino Acids

47.61

Weight (kDa)

9.11

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 103 - 264 1.3e-07 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1013
Acc16I TGCGCA 1 cut(s) 1029
AccBSI CCGCTC 1 cut(s) 233
AccI GTMKAC 3 cut(s) 54, 446, 1149
AciI CCGC 1 cut(s) 231
AclWI GGATC 2 cut(s) 620, 1169
AcyI GRCGYC 3 cut(s) 124, 475, 1010
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 3 cut(s) 184, 756, 986
AfeI AGCGCT 1 cut(s) 994
AfiI CCNNNNNNNGG 3 cut(s) 200, 491, 635
AflII CTTAAG 1 cut(s) 976
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 5 cut(s) 25, 258, 401, 610, 836
AjnI CCWGG 2 cut(s) 193, 1003
AjuI GAANNNNNNNTTGG 4 cut(s) 684, 716, 1049, 1081
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 3 cut(s) 38, 880, 1237
AlwI GGATC 2 cut(s) 620, 1169
Aor51HI AGCGCT 1 cut(s) 994
AsiGI ACCGGT 1 cut(s) 298
AspLEI GCGC 2 cut(s) 995, 1030
AspS9I GGNCC 1 cut(s) 494
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 3 cut(s) 220, 860, 1036
AvaII GGWCC 1 cut(s) 494
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 900
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 4 cut(s) 126, 430, 845, 1027
BciT130I CCWGG 2 cut(s) 195, 1005
BciVI GTATCC 1 cut(s) 583
BclI TGATCA 1 cut(s) 1135
BcnI CCSGG 1 cut(s) 689
BcoDI GTCTC 3 cut(s) 38, 880, 1237
BfaI CTAG 6 cut(s) 129, 138, 327, 414, 996, 1203
BfmI CTRYAG 2 cut(s) 679, 1209
BfoI RGCGCY 1 cut(s) 996
BfrI CTTAAG 1 cut(s) 976
BfuI GTATCC 1 cut(s) 583
Bme1390I CCNGG 3 cut(s) 195, 689, 1005
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 3 cut(s) 195, 689, 1005
BmsI GCATC 1 cut(s) 400
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 900
BplI GAGNNNNNCTC 1 cut(s) 1234
BpuEI CTTGAG 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 689
BsaHI GRCGYC 3 cut(s) 124, 475, 1010
BsaJI CCNNGG 3 cut(s) 273, 788, 1004
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 491, 635
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 1157
BseBI CCWGG 2 cut(s) 195, 1005
BseDI CCNNGG 3 cut(s) 273, 788, 1004
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 3 cut(s) 200, 491, 635
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 1157
BseRI GAGGAG 1 cut(s) 1188
BsgI GTGCAG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 303
BshTI ACCGGT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 2 cut(s) 299, 688
BslFI GGGAC 2 cut(s) 578, 1021
BslI CCNNNNNNNGG 3 cut(s) 200, 491, 635
BsmAI GTCTC 3 cut(s) 38, 880, 1237
BsmFI GGGAC 2 cut(s) 578, 1021
BsmI GAATGC 1 cut(s) 1123
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 5 cut(s) 96, 108, 625, 1135, 1161
BspACI CCGC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 2 cut(s) 620, 1169
BspTI CTTAAG 1 cut(s) 976
BsrBI CCGCTC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 1157
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 273, 788, 1004
BssMI GATC 5 cut(s) 96, 108, 625, 1135, 1161
BssNI GRCGYC 3 cut(s) 124, 475, 1010
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 195, 1005
Bst4CI ACNGT 5 cut(s) 91, 187, 287, 520, 759
Bst6I CTCTTC 1 cut(s) 1089
BstACI GRCGYC 3 cut(s) 124, 475, 1010
BstAFI CTTAAG 1 cut(s) 976
BstAPI GCANNNNNTGC 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 222, 600
BstDEI CTNAG 4 cut(s) 165, 486, 630, 747
BstENI CCTNNNNNAGG 2 cut(s) 489, 633
BstF5I GGATG 1 cut(s) 535
BstH2I RGCGCY 1 cut(s) 996
BstHHI GCGC 2 cut(s) 995, 1030
BstKTI GATC 5 cut(s) 99, 111, 628, 1138, 1164
BstMAI GTCTC 3 cut(s) 38, 880, 1237
BstMBI GATC 5 cut(s) 96, 108, 625, 1135, 1161
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 7 cut(s) 230, 239, 388, 410, 481, 784, 1034
BstNI CCWGG 2 cut(s) 195, 1005
BstNSI RCATGY 1 cut(s) 946
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 193, 687, 1003
BstSFI CTRYAG 2 cut(s) 679, 1209
BstV2I GAAGAC 1 cut(s) 900
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuI GTATCC 1 cut(s) 583
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 222, 600
CciI TCATGA 1 cut(s) 478
CfoI GCGC 2 cut(s) 995, 1030
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 2 cut(s) 113, 464
Csp6I GTAC 3 cut(s) 183, 755, 985
CspAI ACCGGT 1 cut(s) 298
CviAII CATG 6 cut(s) 13, 479, 898, 938, 943, 1060
CviQI GTAC 3 cut(s) 183, 755, 985
DdeI CTNAG 4 cut(s) 165, 486, 630, 747
DpnI GATC 5 cut(s) 98, 110, 627, 1137, 1163
DpnII GATC 5 cut(s) 96, 108, 625, 1135, 1161
DraIII CACNNNGTG 1 cut(s) 1025
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
Eco47I GGWCC 1 cut(s) 494
Eco47III AGCGCT 1 cut(s) 994
EcoNI CCTNNNNNAGG 2 cut(s) 489, 633
EcoO109I RGGNCCY 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 193, 1003
FaeI CATG 6 cut(s) 16, 482, 901, 941, 946, 1063
FalI AAGNNNNNCTT 2 cut(s) 864, 896
FaqI GGGAC 2 cut(s) 578, 1021
FatI CATG 6 cut(s) 12, 478, 897, 937, 942, 1059
FbaI TGATCA 1 cut(s) 1135
FblI GTMKAC 3 cut(s) 54, 446, 1149
FokI GGATG 1 cut(s) 542
FspBI CTAG 6 cut(s) 129, 138, 327, 414, 996, 1203
FspI TGCGCA 1 cut(s) 1029
GlaI GCGC 2 cut(s) 994, 1029
HaeII RGCGCY 1 cut(s) 996
HapII CCGG 2 cut(s) 299, 688
HgaI GACGC 2 cut(s) 113, 464
HhaI GCGC 2 cut(s) 995, 1030
Hin1I GRCGYC 3 cut(s) 124, 475, 1010
Hin1II CATG 6 cut(s) 16, 482, 901, 941, 946, 1063
Hin6I GCGC 2 cut(s) 993, 1028
HinP1I GCGC 2 cut(s) 993, 1028
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 3 cut(s) 167, 468, 765
HinfI GANTC 5 cut(s) 719, 795, 836, 903, 930
HpaII CCGG 2 cut(s) 299, 688
HphI GGTGA 3 cut(s) 220, 860, 1036
Hpy166II GTNNAC 4 cut(s) 55, 447, 886, 1150
Hpy188I TCNGA 3 cut(s) 78, 108, 453
Hpy188III TCNNGA 4 cut(s) 321, 479, 723, 840
Hpy8I GTNNAC 4 cut(s) 55, 447, 886, 1150
Hpy99I CGWCG 4 cut(s) 56, 59, 213, 1015
HpyAV CCTTC 2 cut(s) 42, 364
HpyCH4III ACNGT 5 cut(s) 91, 187, 287, 520, 759
HpyCH4IV ACGT 2 cut(s) 57, 1010
HpyCH4V TGCA 3 cut(s) 71, 391, 830
HpyF10VI GCNNNNNNNGC 7 cut(s) 230, 239, 388, 410, 481, 784, 1034
HpyF3I CTNAG 4 cut(s) 165, 486, 630, 747
HpySE526I ACGT 2 cut(s) 57, 1010
Hsp92I GRCGYC 3 cut(s) 124, 475, 1010
Hsp92II CATG 6 cut(s) 16, 482, 901, 941, 946, 1063
HspAI GCGC 2 cut(s) 993, 1028
Ksp22I TGATCA 1 cut(s) 1135
Kzo9I GATC 5 cut(s) 96, 108, 625, 1135, 1161
LmnI GCTCC 2 cut(s) 950, 1232
LweI GCATC 1 cut(s) 400
MaeI CTAG 6 cut(s) 129, 138, 327, 414, 996, 1203
MaeII ACGT 2 cut(s) 57, 1010
MaeIII GTNAC 7 cut(s) 37, 85, 337, 361, 532, 683, 742
MalI GATC 5 cut(s) 98, 110, 627, 1137, 1163
MbiI CCGCTC 1 cut(s) 233
MboI GATC 5 cut(s) 96, 108, 625, 1135, 1161
MboII GAAGA 9 cut(s) 13, 317, 320, 550, 635, 667, 738, 905, 1106
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 208
MlyI GAGTC 2 cut(s) 804, 939
MmeI TCCRAC 2 cut(s) 797, 1210
MseI TTAA 4 cut(s) 279, 660, 977, 1223
MslI CAYNNNNRTG 2 cut(s) 92, 1203
MspCI CTTAAG 1 cut(s) 976
MspI CCGG 2 cut(s) 299, 688
MspR9I CCNGG 3 cut(s) 195, 689, 1005
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 2 cut(s) 195, 1005
MwoI GCNNNNNNNGC 7 cut(s) 230, 239, 388, 410, 481, 784, 1034
NciI CCSGG 1 cut(s) 689
NdeII GATC 5 cut(s) 96, 108, 625, 1135, 1161
NlaIII CATG 6 cut(s) 16, 482, 901, 941, 946, 1063
NlaIV GGNNCC 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 813
NmuCI GTSAC 4 cut(s) 85, 361, 683, 742
NsbI TGCGCA 1 cut(s) 1029
NspI RCATGY 1 cut(s) 946
PagI TCATGA 1 cut(s) 478
PctI GAATGC 1 cut(s) 1123
PfeI GAWTC 3 cut(s) 719, 836, 903
PfoI TCCNGGA 1 cut(s) 193
PinAI ACCGGT 1 cut(s) 298
PleI GAGTC 2 cut(s) 803, 938
PpsI GAGTC 2 cut(s) 803, 938
PpuMI RGGWCCY 1 cut(s) 494
PshAI GACNNNNGTC 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 193, 1003
PspGI CCWGG 2 cut(s) 193, 1003
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 494
PspPPI RGGWCCY 1 cut(s) 494
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 3 cut(s) 184, 756, 986
RsaNI GTAC 3 cut(s) 183, 755, 985
RseI CAYNNNNRTG 2 cut(s) 92, 1203
SalI GTCGAC 1 cut(s) 53
SaqAI TTAA 4 cut(s) 279, 660, 977, 1223
Sau3AI GATC 5 cut(s) 96, 108, 625, 1135, 1161
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 2 cut(s) 804, 939
ScrFI CCNGG 3 cut(s) 195, 689, 1005
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 2 cut(s) 679, 1209
SgrDI CGTCGACG 1 cut(s) 53
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 2 cut(s) 92, 1203
SmlI CTYRAG 2 cut(s) 811, 976
SmoI CTYRAG 2 cut(s) 811, 976
SsiI CCGC 1 cut(s) 231
SspI AATATT 1 cut(s) 734
SspMI CTAG 6 cut(s) 129, 138, 327, 414, 996, 1203
StyD4I CCNGG 3 cut(s) 193, 687, 1003
TaaI ACNGT 5 cut(s) 91, 187, 287, 520, 759
TaiI ACGT 2 cut(s) 60, 1013
TaqI TCGA 5 cut(s) 54, 303, 514, 577, 798
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 3 cut(s) 719, 836, 903
Tru1I TTAA 4 cut(s) 279, 660, 977, 1223
Tru9I TTAA 4 cut(s) 279, 660, 977, 1223
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 4 cut(s) 85, 361, 683, 742
Tsp45I GTSAC 4 cut(s) 85, 361, 683, 742
TspDTI ATGAA 2 cut(s) 641, 1187
TspGWI ACGGA 4 cut(s) 149, 238, 923, 1036
TspRI CASTG 1 cut(s) 94
Vha464I CTTAAG 1 cut(s) 976
VpaK11BI GGWCC 1 cut(s) 494
XagI CCTNNNNNAGG 2 cut(s) 489, 633
XceI RCATGY 1 cut(s) 946
XmiI GTMKAC 3 cut(s) 54, 446, 1149
XspI CTAG 6 cut(s) 129, 138, 327, 414, 996, 1203
ZraI GACGTC 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.