FvH4_4g02700
ERF Family

Polyketide cyclase dehydrase and lipid transport superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007139
Physical Location & Seq
Reverse (-)
2467775 .. 2472575
4801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02700.t1

Sequence Viewer

Length: 858 bp
ATGGAATGGCAAAGTTTGATGGAGAAAACCACCCCAACCATGGCATATAAAGCATGGCGCTATGACCCTGAGACAGGTCCTACTGTTTACTGTAGTAGAACTGTTTTTGAGGATGCAACTCCAGAGTTGGTTAGAGATTTCTTCTGGGATGATGAGTTTCGACCTAAATGGGATCCTATGCTGGCATATTGTAAAATATTGGAGGAATGCCCGGATACTGGAACTATGATTGTTCACTGGATTAAAAAGTTCCCTTTCTTCTGCAGTGATCGTGAATATATAATTGGTCGAAGAATATGGGAGGCTGGAAAAACTTACTACTGTGTGACAAAGGGTGTTCCATATCCAGGTTTGCCTAAGCGTGATAAGCCTAGACGCGTGGACCATTATTTCTCTAGTTGGATTATCAAGCCTGTGGAGTCACGAAAGGGAGATGGACAGTTATCTGCATGTGAGGTTACCCTTGTCCACTACGAAGATATGGGAATCCCCAAGGATGTGGCTAAGTTGGGCGTCCGTCATGGGATGTGGTGCACTGTCAAAAAATTACACTCCGGCATGAGAGGATACCAAAATGCAAGGAAATCTTCAGAGTTCTGTTTTTCACAATGTGCCCATATGGCAGGAATCACCACAAAGATATCATCCGAAGGAAGCACAAATTATTTGGAGGTAGCACCGGGTGAAGAAGAGAAAAGTAGAGCAGGGAGCAAGGAGAGACATGATAACAATAATGGCATTGATTGGAAATGGATAGCTATAGGGGGCACTCTGGCTCTGGTTTGTGGACTTCATACCGGTGTAGTAGGAAAATCATTGTTACTCGGAGTAGGGCAGAGAATTGCCCGAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

286

Amino Acids

32.62

Weight (kDa)

8.81

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 6 - 159 3.5e-09 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AclWI GGATC 2 cut(s) 167, 180
AcuI CTGAAG 1 cut(s) 573
AcyI GRCGYC 1 cut(s) 513
AdeI CACNNNGTG 2 cut(s) 611, 683
AfiI CCNNNNNNNGG 4 cut(s) 40, 74, 218, 347
AflIII ACRYGT 1 cut(s) 376
AgeI ACCGGT 1 cut(s) 797
AjnI CCWGG 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 758
AluI AGCT 1 cut(s) 758
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 2 cut(s) 65, 712
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 2 cut(s) 167, 180
ApaLI GTGCAC 1 cut(s) 532
AsiGI ACCGGT 1 cut(s) 797
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 77, 382
AsuC2I CCSGG 2 cut(s) 212, 681
AsuHPI GGTGA 2 cut(s) 622, 695
AvaII GGWCC 2 cut(s) 77, 382
BaeGI GKGCMC 3 cut(s) 536, 616, 770
BamHI GGATCC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 536
BccI CCATC 2 cut(s) 13, 428
BciT130I CCWGG 1 cut(s) 348
BciVI GTATCC 2 cut(s) 208, 560
BcnI CCSGG 2 cut(s) 212, 681
BcoDI GTCTC 2 cut(s) 65, 712
BfaI CTAG 2 cut(s) 372, 396
BfmI CTRYAG 3 cut(s) 91, 262, 759
BfoI RGCGCY 1 cut(s) 61
BfuI GTATCC 2 cut(s) 208, 560
BglI GCCNNNNNGGC 1 cut(s) 620
Bme1390I CCNGG 3 cut(s) 212, 348, 681
Bme18I GGWCC 2 cut(s) 77, 382
BmgT120I GGNCC 2 cut(s) 77, 382
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 3 cut(s) 212, 348, 681
BmsI GCATC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 212, 681
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 39, 492
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 74, 218, 347
Bse118I RCCGGY 1 cut(s) 797
Bse1I ACTGG 2 cut(s) 223, 242
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 39, 492
BseGI GGATG 5 cut(s) 118, 154, 502, 531, 644
BseLI CCNNNNNNNGG 4 cut(s) 40, 74, 218, 347
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 223, 242
BseSI GKGCMC 3 cut(s) 536, 616, 770
Bsh1236I CGCG 1 cut(s) 378
BshTI ACCGGT 1 cut(s) 797
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 4 cut(s) 212, 555, 680, 798
BslI CCNNNNNNNGG 4 cut(s) 40, 74, 218, 347
BsmAI GTCTC 2 cut(s) 65, 712
BsmI GAATGC 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 536, 616, 770
Bsp143I GATC 2 cut(s) 172, 268
Bsp19I CCATGG 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 266
BspPI GGATC 2 cut(s) 167, 180
BsrFI RCCGGY 1 cut(s) 797
BsrI ACTGG 2 cut(s) 223, 242
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 2 cut(s) 39, 492
BssMI GATC 2 cut(s) 172, 268
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 39, 492
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 6 cut(s) 85, 92, 103, 323, 441, 538
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 69, 357, 504
BstDSI CCRYGG 1 cut(s) 39
BstEII GGTNACC 1 cut(s) 457
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 5 cut(s) 118, 154, 502, 531, 644
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 2 cut(s) 175, 271
BstMAI GTCTC 2 cut(s) 65, 712
BstMBI GATC 2 cut(s) 172, 268
BstMWI GCNNNNNNNGC 3 cut(s) 50, 367, 620
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 453
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 3 cut(s) 210, 346, 679
BstSFI CTRYAG 3 cut(s) 91, 262, 759
BstSLI GKGCMC 3 cut(s) 536, 616, 770
BstUI CGCG 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 1 cut(s) 172
BsuI GTATCC 2 cut(s) 208, 560
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 5 cut(s) 118, 154, 502, 531, 644
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 3 cut(s) 235, 271, 534
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 2 cut(s) 77, 382
CseI GACGC 2 cut(s) 384, 502
CspAI ACCGGT 1 cut(s) 797
CviAII CATG 6 cut(s) 40, 54, 450, 521, 559, 722
CviJI RGCY 6 cut(s) 305, 370, 412, 503, 758, 776
CviKI_1 RGCY 6 cut(s) 305, 370, 412, 503, 758, 776
DdeI CTNAG 3 cut(s) 69, 357, 504
DpnI GATC 2 cut(s) 174, 270
DpnII GATC 2 cut(s) 172, 268
DraIII CACNNNGTG 2 cut(s) 611, 683
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Eco130I CCWWGG 2 cut(s) 39, 492
Eco32I GATATC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 77, 382
Eco57I CTGAAG 1 cut(s) 573
Eco91I GGTNACC 1 cut(s) 457
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 346
EcoRV GATATC 1 cut(s) 642
EcoT14I CCWWGG 2 cut(s) 39, 492
ErhI CCWWGG 2 cut(s) 39, 492
FaeI CATG 6 cut(s) 43, 57, 453, 524, 562, 725
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FatI CATG 6 cut(s) 39, 53, 449, 520, 558, 721
FauNDI CATATG 1 cut(s) 618
FokI GGATG 5 cut(s) 125, 161, 509, 538, 631
FspBI CTAG 2 cut(s) 372, 396
GlaI GCGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 61
HapII CCGG 4 cut(s) 212, 555, 680, 798
HgaI GACGC 2 cut(s) 384, 502
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 6 cut(s) 43, 57, 453, 524, 562, 725
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 3 cut(s) 419, 486, 627
HpaII CCGG 4 cut(s) 212, 555, 680, 798
HphI GGTGA 2 cut(s) 622, 695
Hpy166II GTNNAC 6 cut(s) 88, 235, 382, 469, 534, 788
Hpy188I TCNGA 3 cut(s) 592, 649, 827
Hpy188III TCNNGA 3 cut(s) 122, 272, 423
Hpy8I GTNNAC 6 cut(s) 88, 235, 382, 469, 534, 788
HpyAV CCTTC 2 cut(s) 644, 843
HpyCH4III ACNGT 6 cut(s) 85, 92, 103, 323, 441, 538
HpyCH4V TGCA 5 cut(s) 116, 264, 449, 534, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 367, 620
HpyF3I CTNAG 3 cut(s) 69, 357, 504
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 6 cut(s) 43, 57, 453, 524, 562, 725
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 2 cut(s) 172, 268
LmnI GCTCC 1 cut(s) 708
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 372, 396
MaeIII GTNAC 4 cut(s) 325, 420, 457, 819
MalI GATC 2 cut(s) 174, 270
MboI GATC 2 cut(s) 172, 268
MboII GAAGA 7 cut(s) 133, 250, 303, 488, 579, 698, 701
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 3 cut(s) 536, 616, 770
MluCI AATT 4 cut(s) 282, 545, 661, 840
MluI ACGCGT 1 cut(s) 376
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 6 cut(s) 103, 196, 295, 448, 557, 664
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 798
MspI CCGG 4 cut(s) 212, 555, 680, 798
MspR9I CCNGG 3 cut(s) 212, 348, 681
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 50, 367, 620
NciI CCSGG 2 cut(s) 212, 681
NcoI CCATGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 618
NdeII GATC 2 cut(s) 172, 268
NlaIII CATG 6 cut(s) 43, 57, 453, 524, 562, 725
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 325, 420
NspI RCATGY 1 cut(s) 453
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 486, 627
PinAI ACCGGT 1 cut(s) 797
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 346
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 2 cut(s) 77, 382
PspPPI RGGWCCY 1 cut(s) 77
PstI CTGCAG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 798
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 2 cut(s) 172, 268
Sau96I GGNCC 2 cut(s) 77, 382
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 3 cut(s) 212, 348, 681
SduI GDGCHC 3 cut(s) 536, 616, 770
SetI ASST 6 cut(s) 79, 166, 352, 459, 675, 760
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 3 cut(s) 91, 262, 759
SinI GGWCC 2 cut(s) 77, 382
SmiMI CAYNNNNRTG 1 cut(s) 798
Sse9I AATT 4 cut(s) 282, 545, 661, 840
SspI AATATT 1 cut(s) 198
SspMI CTAG 2 cut(s) 372, 396
StyD4I CCNGG 3 cut(s) 210, 346, 679
StyI CCWWGG 2 cut(s) 39, 492
TaaI ACNGT 6 cut(s) 85, 92, 103, 323, 441, 538
TaqI TCGA 2 cut(s) 160, 289
TasI AATT 4 cut(s) 282, 545, 661, 840
TfiI GAWTC 2 cut(s) 486, 627
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 3 cut(s) 242, 271, 541
TseFI GTSAC 2 cut(s) 325, 420
Tsp45I GTSAC 2 cut(s) 325, 420
TspDTI ATGAA 1 cut(s) 782
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 3 cut(s) 242, 271, 541
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 77, 382
XagI CCTNNNNNAGG 1 cut(s) 72
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 2 cut(s) 372, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.