AT4G14500

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007139
Physical Location & Seq
Forward (+)
8334055 .. 8337640
3586 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14500.2

Sequence Viewer

Length: 1302 bp
ATGGATGAGACCTATTTTGATCTATTGAATTTCTTTAAGAATCCCTCTTTTACAGAGACATTTGTCGACATCTTACTATGCGCAGTTCCGATTTGGCTCGCCGTTATGATCGGGTTATTAATCGGATGGTCTTGGCGTCCAAGATGGACCGGTTTGATCTATTTAGGGTTTCGTTCTAAGCTTCGGTTTTTATGGACCGCACCGCCTGGGTTTGGTGCTCGTCGGCTTTGGCTTGCTTTCACCGCTCTCTCTGCTTTCTCCGTTTGCCGAACCATCTGGTCAAGGAATGACACCAGAGCTAATAAATCGGCGACCGGTTCAGCTTCGTCGCAGACGCCTGTTGAGGATAATGATGAATCAGGATTGGCCTCAAGAGGTAGCGATAACGGGACGGTGACAGAGGATATTGTGACAGAGAATGATTTAGAGCATCTGCTTCAGCTGCTTGAAGTTGGAAATGCAGCTTTGGAATGGCAATCTATGATGGATAAGACTACTCCAAATATGAGCTACCAGGCTTGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGCCGGACTGTGTTTGAGGATGCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAAATGGGATTTCATGCTTGCCAACTTCAAAACGTTGGAGGAGGACACTCAGACAGGAACAATGATTGTTCAGTGGAGAAAAAAGTTTCCTTTTTTCTGTAGTGACCGAGAGTATATCATTGGCCGGAGAATATGGGAGTCTGGGAAGAAGTATTATTGTGTCACAAAGGGAGTTCCTTATCCAGCTCTACCAAAGCGTGATAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGGTTGAATCCCGAAAAGGAGATGGACAGCAAACGGCTTGTGAAGTTTCCCTTGTCCACTACGAAGACATGGGCATCCCAAAAGACGTAGCAAAGTTAGGTGTCCGTCATGGCATGTGGGGAGCTGTCAAGAAGCTAAACTCTGGTTTACGAGCGTACCAATCCGCCAGAAAATCAGACTCATCTCTATCTCGGATCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGGATTCTGCAGAATCATCTTCAAGAGATGAAGACAGAAGCAGAGCAATGGAATATGCGAGACAACGGGACCATTTGAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCGCATTGGCTTGTGGCCTTCACTCTGGGATCATTGGCAAGGCTTTACTGGCTGGAGCTGGCCAGAGACTGGCTCGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

433

Amino Acids

49.5

Weight (kDa)

9.08

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 1288
AccBSI CCGCTC 2 cut(s) 245, 878
AccI GTMKAC 1 cut(s) 66
AciI CCGC 5 cut(s) 198, 203, 243, 878, 1041
AclI AACGTT 1 cut(s) 662
AclWI GGATC 2 cut(s) 1079, 1256
AcoI YGGCCR 2 cut(s) 751, 1279
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 422
AcyI GRCGYC 3 cut(s) 136, 335, 523
AfaI GTAC 1 cut(s) 1034
AfiI CCNNNNNNNGG 3 cut(s) 212, 539, 1288
AgeI ACCGGT 2 cut(s) 149, 314
AgsI TTSAA 5 cut(s) 28, 449, 658, 884, 1131
AjnI CCWGG 2 cut(s) 205, 513
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 5 cut(s) 2, 50, 530, 1162, 1279
AlwI GGATC 2 cut(s) 1079, 1256
AlwNI CAGNNNCTG 2 cut(s) 545, 1288
AoxI GGCC 4 cut(s) 366, 751, 1234, 1279
ApeKI GCWGC 3 cut(s) 442, 461, 558
ApoI RAATTY 1 cut(s) 28
AseI ATTAAT 1 cut(s) 119
AsiGI ACCGGT 2 cut(s) 149, 314
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 4 cut(s) 147, 195, 542, 1177
AsuHPI GGTGA 2 cut(s) 232, 406
AvaII GGWCC 4 cut(s) 147, 195, 542, 1177
BaeI ACNNNNGTAYC 2 cut(s) 1016, 1049
BalI TGGCCA 1 cut(s) 1281
BbsI GAAGAC 2 cut(s) 948, 1146
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 429, 473, 570
BccI CCATC 5 cut(s) 120, 138, 281, 478, 893
BceAI ACGGC 2 cut(s) 86, 927
BciT130I CCWGG 2 cut(s) 207, 515
BcoDI GTCTC 5 cut(s) 2, 50, 530, 1162, 1279
BfmI CTRYAG 2 cut(s) 727, 1116
BglI GCCNNNNNGGC 1 cut(s) 1082
BisI GCNGC 3 cut(s) 443, 462, 559
BlsI GCNGC 3 cut(s) 444, 463, 560
Bme1390I CCNGG 2 cut(s) 207, 515
Bme18I GGWCC 4 cut(s) 147, 195, 542, 1177
BmgT120I GGNCC 4 cut(s) 147, 195, 542, 1177
BmiI GGNNCC 1 cut(s) 1178
BmrFI CCNGG 2 cut(s) 207, 515
BmsI GCATC 3 cut(s) 439, 568, 960
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 2 cut(s) 948, 1146
BplI GAGNNNNNCTC 1 cut(s) 1276
BpmI CTGGAG 2 cut(s) 570, 1293
BpuEI CTTGAG 2 cut(s) 355, 844
BsaHI GRCGYC 3 cut(s) 136, 335, 523
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 2 cut(s) 206, 836
BsaWI WCCGGW 2 cut(s) 149, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 539, 1288
Bse118I RCCGGY 2 cut(s) 149, 314
Bse1I ACTGG 3 cut(s) 1199, 1272, 1293
Bse3DI GCAATG 1 cut(s) 1161
BseBI CCWGG 2 cut(s) 207, 515
BseDI CCNNGG 2 cut(s) 206, 836
BseGI GGATG 5 cut(s) 10, 131, 583, 619, 951
BseLI CCNNNNNNNGG 3 cut(s) 212, 539, 1288
BseMI GCAATG 1 cut(s) 1161
BseMII CTCAG 2 cut(s) 525, 692
BseNI ACTGG 3 cut(s) 1199, 1272, 1293
BseRI GAGGAG 1 cut(s) 683
BseXI GCAGC 3 cut(s) 429, 473, 570
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 4 cut(s) 368, 753, 1236, 1281
BshTI ACCGGT 2 cut(s) 149, 314
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 4 cut(s) 150, 315, 562, 754
BslFI GGGAC 2 cut(s) 403, 1190
BslI CCNNNNNNNGG 3 cut(s) 212, 539, 1288
BsmAI GTCTC 5 cut(s) 2, 50, 530, 1162, 1279
BsmFI GGGAC 2 cut(s) 403, 1190
BsnI GGCC 4 cut(s) 368, 753, 1236, 1281
Bso31I GGTCTC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 5 cut(s) 19, 108, 156, 1071, 1248
BspACI CCGC 5 cut(s) 198, 203, 243, 878, 1041
BspANI GGCC 4 cut(s) 368, 753, 1236, 1281
BspCNI CTCAG 2 cut(s) 526, 691
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 1178
BspMAI CTGCAG 1 cut(s) 1120
BspPI GGATC 2 cut(s) 1079, 1256
BspTNI GGTCTC 1 cut(s) 2
BsrBI CCGCTC 2 cut(s) 245, 878
BsrDI GCAATG 1 cut(s) 1161
BsrFI RCCGGY 2 cut(s) 149, 314
BsrI ACTGG 3 cut(s) 1199, 1272, 1293
BssAI RCCGGY 2 cut(s) 149, 314
BssECI CCNNGG 2 cut(s) 206, 836
BssMI GATC 5 cut(s) 19, 108, 156, 1071, 1248
BssNI GRCGYC 3 cut(s) 136, 335, 523
BssT1I CCWWGG 1 cut(s) 836
Bst2UI CCWGG 2 cut(s) 207, 515
Bst4CI ACNGT 2 cut(s) 394, 568
BstACI GRCGYC 3 cut(s) 136, 335, 523
BstC8I GCNNGC 4 cut(s) 99, 234, 648, 1279
BstDEI CTNAG 3 cut(s) 177, 534, 678
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 5 cut(s) 10, 131, 583, 619, 951
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 5 cut(s) 22, 111, 159, 1074, 1251
BstMAI GTCTC 5 cut(s) 2, 50, 530, 1162, 1279
BstMBI GATC 5 cut(s) 19, 108, 156, 1071, 1248
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 8 cut(s) 242, 251, 442, 529, 832, 847, 1082, 1268
BstNI CCWGG 2 cut(s) 207, 515
BstNSI RCATGY 1 cut(s) 994
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 205, 513
BstSFI CTRYAG 2 cut(s) 727, 1116
BstV1I GCAGC 3 cut(s) 429, 473, 570
BstV2I GAAGAC 2 cut(s) 948, 1146
BsuRI GGCC 4 cut(s) 368, 753, 1236, 1281
BtsCI GGATG 5 cut(s) 10, 131, 583, 619, 951
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 4 cut(s) 99, 234, 648, 1279
CaiI CAGNNNCTG 2 cut(s) 545, 1288
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 149, 314
Cfr13I GGNCC 4 cut(s) 147, 195, 542, 1177
CseI GACGC 3 cut(s) 125, 343, 512
Csp6I GTAC 1 cut(s) 1033
CspAI ACCGGT 2 cut(s) 149, 314
CviAII CATG 6 cut(s) 527, 643, 946, 986, 991, 1108
CviQI GTAC 1 cut(s) 1033
DdeI CTNAG 3 cut(s) 177, 534, 678
DpnI GATC 5 cut(s) 21, 110, 158, 1073, 1250
DpnII GATC 5 cut(s) 19, 108, 156, 1071, 1248
EaeI YGGCCR 2 cut(s) 751, 1279
EciI GGCGGA 1 cut(s) 1030
Eco130I CCWWGG 1 cut(s) 836
Eco31I GGTCTC 1 cut(s) 2
Eco47I GGWCC 4 cut(s) 147, 195, 542, 1177
Eco57I CTGAAG 1 cut(s) 422
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 205, 513
EcoT14I CCWWGG 1 cut(s) 836
ErhI CCWWGG 1 cut(s) 836
FaeI CATG 6 cut(s) 530, 646, 949, 989, 994, 1111
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FaqI GGGAC 2 cut(s) 403, 1190
FatI CATG 6 cut(s) 526, 642, 945, 985, 990, 1107
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 443, 462, 559
FokI GGATG 5 cut(s) 17, 138, 590, 626, 938
Fsp4HI GCNGC 3 cut(s) 443, 462, 559
FspI TGCGCA 1 cut(s) 82
GlaI GCGC 1 cut(s) 82
GluI GCNGC 3 cut(s) 443, 462, 559
GsuI CTGGAG 2 cut(s) 570, 1293
HaeIII GGCC 4 cut(s) 368, 753, 1236, 1281
HapII CCGG 4 cut(s) 150, 315, 562, 754
HgaI GACGC 3 cut(s) 125, 343, 512
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 3 cut(s) 136, 335, 523
Hin1II CATG 6 cut(s) 530, 646, 949, 989, 994, 1111
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 8 cut(s) 40, 356, 767, 884, 1055, 1089, 1112, 1121
HpaII CCGG 4 cut(s) 150, 315, 562, 754
HphI GGTGA 2 cut(s) 232, 406
Hpy166II GTNNAC 3 cut(s) 67, 934, 1025
Hpy188I TCNGA 6 cut(s) 90, 125, 681, 875, 1054, 1071
Hpy188III TCNNGA 7 cut(s) 360, 372, 527, 587, 888, 1006, 1131
Hpy8I GTNNAC 3 cut(s) 67, 934, 1025
Hpy99I CGWCG 2 cut(s) 225, 331
HpyAV CCTTC 1 cut(s) 1247
HpyCH4III ACNGT 2 cut(s) 394, 568
HpyCH4IV ACGT 2 cut(s) 662, 963
HpyCH4V TGCA 3 cut(s) 461, 581, 1118
HpyF10VI GCNNNNNNNGC 8 cut(s) 242, 251, 442, 529, 832, 847, 1082, 1268
HpyF3I CTNAG 3 cut(s) 177, 534, 678
HpySE526I ACGT 2 cut(s) 662, 963
Hsp92I GRCGYC 3 cut(s) 136, 335, 523
Hsp92II CATG 6 cut(s) 530, 646, 949, 989, 994, 1111
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 5 cut(s) 19, 108, 156, 1071, 1248
LmnI GCTCC 2 cut(s) 998, 1274
Lsp1109I GCAGC 3 cut(s) 429, 473, 570
LweI GCATC 3 cut(s) 439, 568, 960
MaeII ACGT 2 cut(s) 662, 963
MaeIII GTNAC 4 cut(s) 394, 409, 731, 790
MalI GATC 5 cut(s) 21, 110, 158, 1073, 1250
MbiI CCGCTC 2 cut(s) 245, 878
MboI GATC 5 cut(s) 19, 108, 156, 1071, 1248
MboII GAAGA 5 cut(s) 598, 787, 953, 1119, 1151
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 1281
MluCI AATT 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 1281
MlyI GAGTC 2 cut(s) 776, 1049
MmeI TCCRAC 2 cut(s) 433, 645
MnlI CCTC 9 cut(s) 55, 337, 368, 379, 394, 568, 661, 664, 1208
Mox20I TGGCCA 1 cut(s) 1281
MscI TGGCCA 1 cut(s) 1281
MseI TTAA 2 cut(s) 36, 119
Msp20I TGGCCA 1 cut(s) 1281
MspA1I CMGCKG 1 cut(s) 442
MspI CCGG 4 cut(s) 150, 315, 562, 754
MspR9I CCNGG 2 cut(s) 207, 515
MvaI CCWGG 2 cut(s) 207, 515
MwoI GCNNNNNNNGC 8 cut(s) 242, 251, 442, 529, 832, 847, 1082, 1268
NdeII GATC 5 cut(s) 19, 108, 156, 1071, 1248
NlaIII CATG 6 cut(s) 530, 646, 949, 989, 994, 1111
NlaIV GGNNCC 1 cut(s) 1178
NmuCI GTSAC 4 cut(s) 394, 409, 731, 790
NsbI TGCGCA 1 cut(s) 82
NspI RCATGY 1 cut(s) 994
PagI TCATGA 1 cut(s) 526
PfeI GAWTC 6 cut(s) 40, 356, 884, 1089, 1112, 1121
PflMI CCANNNNNTGG 1 cut(s) 1288
PinAI ACCGGT 2 cut(s) 149, 314
PkrI GCNGC 3 cut(s) 444, 463, 560
PleI GAGTC 2 cut(s) 775, 1049
PpsI GAGTC 2 cut(s) 775, 1049
PpuMI RGGWCCY 1 cut(s) 542
PshAI GACNNNNGTC 1 cut(s) 62
PshBI ATTAAT 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 662
Psp5II RGGWCCY 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 205, 513
PspGI CCWGG 2 cut(s) 205, 513
PspN4I GGNNCC 1 cut(s) 1178
PspPI GGNCC 4 cut(s) 147, 195, 542, 1177
PspPPI RGGWCCY 1 cut(s) 542
PstI CTGCAG 1 cut(s) 1120
PstNI CAGNNNCTG 2 cut(s) 545, 1288
PvuII CAGCTG 1 cut(s) 442
RsaI GTAC 1 cut(s) 1034
RsaNI GTAC 1 cut(s) 1033
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 36, 119
SatI GCNGC 3 cut(s) 443, 462, 559
Sau3AI GATC 5 cut(s) 19, 108, 156, 1071, 1248
Sau96I GGNCC 4 cut(s) 147, 195, 542, 1177
SchI GAGTC 2 cut(s) 776, 1049
ScrFI CCNGG 2 cut(s) 207, 515
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 3 cut(s) 439, 568, 960
SfcI CTRYAG 2 cut(s) 727, 1116
SinI GGWCC 4 cut(s) 147, 195, 542, 1177
SmlI CTYRAG 2 cut(s) 370, 859
SmoI CTYRAG 2 cut(s) 370, 859
Sse9I AATT 1 cut(s) 28
SsiI CCGC 5 cut(s) 198, 203, 243, 878, 1041
StyD4I CCNGG 2 cut(s) 205, 513
StyI CCWWGG 1 cut(s) 836
TaaI ACNGT 2 cut(s) 394, 568
TaiI ACGT 2 cut(s) 665, 966
TaqI TCGA 2 cut(s) 66, 625
TaqII GACCGA 1 cut(s) 750
TasI AATT 1 cut(s) 28
TfiI GAWTC 6 cut(s) 40, 356, 884, 1089, 1112, 1121
Tru1I TTAA 2 cut(s) 36, 119
Tru9I TTAA 2 cut(s) 36, 119
TscAI CASTG 1 cut(s) 707
TseFI GTSAC 4 cut(s) 394, 409, 731, 790
TseI GCWGC 3 cut(s) 442, 461, 558
Tsp45I GTSAC 4 cut(s) 394, 409, 731, 790
TspDTI ATGAA 3 cut(s) 369, 631, 1152
TspGWI ACGGA 2 cut(s) 250, 971
TspRI CASTG 1 cut(s) 707
Van91I CCANNNNNTGG 1 cut(s) 1288
VpaK11BI GGWCC 4 cut(s) 147, 195, 542, 1177
VspI ATTAAT 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 994
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.