Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0022090

Physical Location & Seq

Genomic Coordinates Forward (+)

10690637 .. 10690714

Gene Structure 78 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 78 bp

ATGTGTAGGGATCTATGGAATTGGGCAAGCAATAACCCTTACGGCTACAATTCCTCCTCCAACGGCTCCTCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

25

Amino Acids

2.8

Weight (kDa)

5.58

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28530
rosa_chinensis	RchiOBHm_Chr7g0194541
rosa_laevigata	RLG00000004192
rosa_multiflora	Rmu_sc0004908.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
BseRI	GAGGAG	2 cut(s)	46, 58
Bsp143I	GATC	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	18
BssMI	GATC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	28
CviJI	RGCY	2 cut(s)	45, 66
CviKI_1	RGCY	2 cut(s)	45, 66
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
FaiI	YATR	2 cut(s)	16, 76
FspEI	CC	9 cut(s)	7, 8, 27, 48, 50, 51, 67, 70, 73
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	71
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	2 cut(s)	19, 49
MnlI	CCTC	2 cut(s)	64, 67
MspJI	CNNR	6 cut(s)	8, 9, 27, 39, 51, 72
NdeII	GATC	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	10
SgeI	CNNG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	19, 49
TasI	AATT	2 cut(s)	19, 49
TspDTI	ATGAA	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.