Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022090

Physical Location & Seq

Genomic Coordinates Reverse (-)

12548088 .. 12548590

Gene Structure 503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGACTTTTCTAAAGAAAATTCCTCTTGTTATTGCTGGCCGGCGACCTGGTGATGCTGAAGTTGTCTATGCATCAACAGATAAGGCAGAGAGGGAACTGAACTGGAAGGCGAAATATAACATTGATGACATGTGCCGGGATCAGTGGAATTGGGCTAGCAAGAACCCATATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

58

Amino Acids

6.76

Weight (kDa)

8.85

Isoelectric Point (pI)

24.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDP_Man_Dehyd	PF16363	12 - 47	3.8e-06	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28530
rosa_chinensis	RchiOBHm_Chr7g0194541
rosa_laevigata	RLG00000004192
rosa_multiflora	Rmu_sc0004908.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	46
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	62
AsuNHI	GCTAGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	137
BfaI	CTAG	2 cut(s)	156, 175
Bme1390I	CCNGG	2 cut(s)	48, 137
BmrFI	CCNGG	2 cut(s)	48, 137
BmsI	GCATC	2 cut(s)	43, 80
BmtI	GCTAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	40, 136
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	39
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	37, 41, 157
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	46, 135
BsuRI	GGCC	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	37, 41, 157
Cfr10I	RCCGGY	1 cut(s)	39
CsiI	ACCWGGT	1 cut(s)	46
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	3 cut(s)	39, 155, 174
CviKI_1	RGCY	3 cut(s)	39, 155, 174
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	69, 117, 131, 169, 171
FatI	CATG	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	169
FspBI	CTAG	2 cut(s)	156, 175
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	40, 136
Hin1II	CATG	1 cut(s)	133
HpaII	CCGG	2 cut(s)	40, 136
HphI	GGTGA	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	133
KroI	GCCGGC	1 cut(s)	39
KroNI	GCCGGC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	6 cut(s)	21, 33, 53, 60, 88, 149
LweI	GCATC	2 cut(s)	43, 80
MabI	ACCWGGT	1 cut(s)	46
MaeI	CTAG	2 cut(s)	156, 175
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MluCI	AATT	2 cut(s)	18, 148
MnlI	CCTC	2 cut(s)	33, 84
Mph1103I	ATGCAT	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	39
MspI	CCGG	2 cut(s)	40, 136
MspR9I	CCNGG	2 cut(s)	48, 137
MvaI	CCWGG	1 cut(s)	48
NaeI	GCCGGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	137
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	1 cut(s)	139
NgoMIV	GCCGGC	1 cut(s)	39
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	133
PciI	ACATGT	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	41
PscI	ACATGT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	48, 137
SetI	ASST	1 cut(s)	49
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	43, 80
Sse9I	AATT	2 cut(s)	18, 148
SspMI	CTAG	2 cut(s)	156, 175
StyD4I	CCNGG	2 cut(s)	46, 135
TasI	AATT	2 cut(s)	18, 148
TscAI	CASTG	1 cut(s)	149
TspRI	CASTG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	133
XspI	CTAG	2 cut(s)	156, 175
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.