Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0022090

Physical Location & Seq

Genomic Coordinates Forward (+)

57118093 .. 57123659

Gene Structure 5567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACTGCACAGTCTTACTCCCCCGGCCTTCGAATTCCAGTCGACCTCCTCCGATGCATCCCCCATGTCAGTCCACTCCTGATCATGCCTCAATCCTCTCTTCAACGCATCAATAATATCCTTGGCAATCAGCCTAACCCTCACACTTTCCAAGTGCCAATTATTCATAGAGATATACGAGCCTCTTGTGTTTTCTTGGGCAATGATTATATTCCGAAGCTTTGCAACTTCTCACTTTCCATAACCTTTCCTCCTATGCAATCCCATGTTGTAGATGAGCCAAAAGGGACATATGGGTACCTTGACCCTGCCTACATGAGGTCTGGTTACATTTCAGAAAAGACTAATGTTTATAGCTTTGGTGTGCTTTTACTTATATTGTTGATAGGCCAAAAAGTTGTGCTTCAATATCAAGGAGAATTTGAGTCGATTATTTCATATGTGAAACGTCATGCTAGTGATGGTCAGATTCAGACGAAAATTCCTCTTGTTATTGCTGGCCGGCGACCTGGTGATGCTGAAGTTGTCTATGCATCAACAGATAAGGCAGAGAGGGAACTGAACTGGAAGGCGAAATATAACATTGATGACATGTGCCGGGATCAGTGGAATTGGGCTAGCAAGAACCCATATGGCTATGGACCTCAAGACAATAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

221

Amino Acids

24.87

Weight (kDa)

8.28

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	51 - 144	8.7e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	53 - 131	2.3e-07	Protein tyrosine and serine/threonine kinase
GDP_Man_Dehyd	PF16363	153 - 201	8.1e-06	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28530
rosa_chinensis	RchiOBHm_Chr7g0194541
rosa_laevigata	RLG00000004192
rosa_multiflora	Rmu_sc0004908.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	609
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	3 cut(s)	33, 419, 480
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	2 cut(s)	104, 407
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	220, 357, 660
AluI	AGCT	3 cut(s)	220, 357, 660
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	3 cut(s)	25, 388, 499
ApeKI	GCWGC	1 cut(s)	657
ApoI	RAATTY	3 cut(s)	33, 419, 480
Asp718I	GGTACC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	2 cut(s)	24, 599
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	297
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	2 cut(s)	24, 599
BfaI	CTAG	2 cut(s)	456, 618
BisI	GCNGC	1 cut(s)	658
BlsI	GCNGC	1 cut(s)	659
Bme1390I	CCNGG	3 cut(s)	24, 510, 599
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	3 cut(s)	24, 510, 599
BmsI	GCATC	5 cut(s)	44, 66, 117, 505, 542
BmtI	GCTAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	630
BpuMI	CCSGG	2 cut(s)	24, 599
BsaJI	CCNNGG	2 cut(s)	22, 121
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	2 cut(s)	38, 569
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	22, 121
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	38, 569
BseRI	GAGGAG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	27, 390, 501
BshNI	GGYRCC	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	24, 502, 598
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	27, 390, 501
Bsp119I	TTCGAA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	81, 601
BspANI	GGCC	3 cut(s)	27, 390, 501
BspLI	GGNNCC	1 cut(s)	299
BspOI	GCTAGC	1 cut(s)	621
BspPI	GGATC	1 cut(s)	609
BspT104I	TTCGAA	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	38, 569
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	2 cut(s)	22, 121
BssMI	GATC	2 cut(s)	81, 601
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	3 cut(s)	499, 503, 619
BstENI	CCTNNNNNAGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	84, 604
BstMBI	GATC	2 cut(s)	81, 601
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	3 cut(s)	22, 508, 597
BsuRI	GGCC	3 cut(s)	27, 390, 501
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	611
Cac8I	GCNNGC	3 cut(s)	499, 503, 619
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	641
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	6 cut(s)	65, 85, 266, 316, 452, 592
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	2 cut(s)	83, 603
DpnII	GATC	2 cut(s)	81, 601
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	540
EcoNI	CCTNNNNNAGG	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	2 cut(s)	59, 535
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	6 cut(s)	68, 88, 269, 319, 455, 595
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	6 cut(s)	64, 84, 265, 315, 451, 591
FauNDI	CATATG	3 cut(s)	292, 439, 631
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	658
FspBI	CTAG	2 cut(s)	456, 618
GluI	GCNGC	1 cut(s)	658
HaeIII	GGCC	3 cut(s)	27, 390, 501
HapII	CCGG	3 cut(s)	24, 502, 598
Hin1II	CATG	6 cut(s)	68, 88, 269, 319, 455, 595
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	425, 469
HpaII	CCGG	3 cut(s)	24, 502, 598
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	43, 74
Hpy188I	TCNGA	5 cut(s)	53, 216, 337, 468, 474
Hpy188III	TCNNGA	2 cut(s)	79, 647
Hpy8I	GTNNAC	2 cut(s)	43, 74
HpyAV	CCTTC	2 cut(s)	38, 562
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	5 cut(s)	8, 57, 225, 259, 533
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	6 cut(s)	68, 88, 269, 319, 455, 595
KpnI	GGTACC	1 cut(s)	301
KroI	GCCGGC	1 cut(s)	501
KroNI	GCCGGC	1 cut(s)	503
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 601
LweI	GCATC	5 cut(s)	44, 66, 117, 505, 542
MabI	ACCWGGT	1 cut(s)	508
MaeI	CTAG	2 cut(s)	456, 618
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	83, 603
MboI	GATC	2 cut(s)	81, 601
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	5 cut(s)	33, 159, 419, 480, 610
MlyI	GAGTC	1 cut(s)	434
Mph1103I	ATGCAT	2 cut(s)	59, 535
MroNI	GCCGGC	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	3 cut(s)	24, 502, 598
MspR9I	CCNGG	3 cut(s)	24, 510, 599
MvaI	CCWGG	1 cut(s)	510
NaeI	GCCGGC	1 cut(s)	503
NciI	CCSGG	2 cut(s)	24, 599
NdeI	CATATG	3 cut(s)	292, 439, 631
NdeII	GATC	2 cut(s)	81, 601
NgoMIV	GCCGGC	1 cut(s)	501
NheI	GCTAGC	1 cut(s)	617
NlaIII	CATG	6 cut(s)	68, 88, 269, 319, 455, 595
NlaIV	GGNNCC	1 cut(s)	299
NsiI	ATGCAT	2 cut(s)	59, 535
NspI	RCATGY	1 cut(s)	595
NspV	TTCGAA	1 cut(s)	31
PciI	ACATGT	1 cut(s)	591
PdiI	GCCGGC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	659
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PscI	ACATGT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	660
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	456
SalI	GTCGAC	1 cut(s)	41
SatI	GCNGC	1 cut(s)	658
Sau3AI	GATC	2 cut(s)	81, 601
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	24, 510, 599
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	5 cut(s)	44, 66, 117, 505, 542
SfuI	TTCGAA	1 cut(s)	31
SinI	GGWCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
Sse9I	AATT	5 cut(s)	33, 159, 419, 480, 610
SspMI	CTAG	2 cut(s)	456, 618
StyD4I	CCNGG	3 cut(s)	22, 508, 597
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	3 cut(s)	31, 42, 428
TasI	AATT	5 cut(s)	33, 159, 419, 480, 610
TfiI	GAWTC	1 cut(s)	469
TscAI	CASTG	1 cut(s)	611
TseI	GCWGC	1 cut(s)	657
TspDTI	ATGAA	2 cut(s)	155, 426
TspRI	CASTG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	641
XagI	CCTNNNNNAGG	1 cut(s)	316
XapI	RAATTY	3 cut(s)	33, 419, 480
XceI	RCATGY	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	2 cut(s)	456, 618
Zsp2I	ATGCAT	2 cut(s)	59, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.