Rmu_sc0004908.1_g000007

bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004908.1
OG0022090
Physical Location & Seq
Forward (+)
70042 .. 70742
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004908.1_g000007.1.cds

Sequence Viewer

Length: 327 bp
atggacttagcagatggccatattgctgctcttcagaagctttttactacagagaatacaggttgtattgcctacaacctgggaactggacaaggtacatccgtgctcgaaatggttgctgcctttgagaaggcttctggcaagaaaatccctatcaaactatgttcgcggaggccaggagatgctactgctgtttatgcttcaactgagaaagctagaagggaacttggatggaaggcaaaatacggagtggaggagatgtgcagggaccaatggaattgggcagtaaacaatccatggggttacggttgccaatccaagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00520 ko01100 map00052 map00520 map01100
Pfam Domains
Protein Families
GDP_Man_Dehyd

Protein Analysis

108

Amino Acids

11.86

Weight (kDa)

8.72

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28530
rosa_chinensis RchiOBHm_Chr7g0194541
rosa_laevigata RLG00000004192
rosa_multiflora Rmu_sc0004908.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 204
AjnI CCWGG 2 cut(s) 78, 175
AluBI AGCT 2 cut(s) 40, 215
AluI AGCT 2 cut(s) 40, 215
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 2 cut(s) 16, 173
ApeKI GCWGC 2 cut(s) 26, 119
AspS9I GGNCC 1 cut(s) 268
AvaII GGWCC 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
BalI TGGCCA 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 13, 106
BccI CCATC 2 cut(s) 8, 225
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 2 cut(s) 80, 177
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 27, 120
BlsI GCNGC 2 cut(s) 28, 121
Bme1390I CCNGG 2 cut(s) 80, 177
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 80, 177
BmsI GCATC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 79, 296
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 2 cut(s) 80, 177
BseDI CCNNGG 2 cut(s) 79, 296
BseGI GGATG 2 cut(s) 98, 236
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 13, 106
BsgI GTGCAG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 18, 175
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 18, 175
Bsp1286I GDGCHC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 1 cut(s) 169
BspANI GGCC 2 cut(s) 18, 175
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 79, 296
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 2 cut(s) 80, 177
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 7, 207
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 98, 236
BstFNI CGCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 80, 177
BstSCI CCNGG 2 cut(s) 78, 175
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 13, 106
BsuRI GGCC 2 cut(s) 18, 175
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 2 cut(s) 98, 236
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 297
CviJI RGCY 6 cut(s) 18, 40, 134, 175, 215, 322
CviKI_1 RGCY 6 cut(s) 18, 40, 134, 175, 215, 322
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 2 cut(s) 7, 207
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 78, 175
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 1 cut(s) 300
FaiI YATR 4 cut(s) 21, 163, 198, 298
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 296
Fnu4HI GCNGC 2 cut(s) 27, 120
FokI GGATG 2 cut(s) 85, 243
Fsp4HI GCNGC 2 cut(s) 27, 120
FspBI CTAG 1 cut(s) 216
GluI GCNGC 2 cut(s) 27, 120
HaeIII GGCC 2 cut(s) 18, 175
Hin1II CATG 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 124, 213, 229
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 7, 207
Hsp92II CATG 1 cut(s) 300
LguI GCTCTTC 1 cut(s) 36
LpnPI CCDG 8 cut(s) 45, 65, 72, 92, 123, 162, 189, 250
Lsp1109I GCAGC 2 cut(s) 13, 106
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 302
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 1 cut(s) 277
MluNI TGGCCA 1 cut(s) 18
MnlI CCTC 2 cut(s) 165, 247
Mox20I TGGCCA 1 cut(s) 18
MscI TGGCCA 1 cut(s) 18
Msp20I TGGCCA 1 cut(s) 18
MspR9I CCNGG 2 cut(s) 80, 177
MvaI CCWGG 2 cut(s) 80, 177
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 197
NcoI CCATGG 1 cut(s) 296
NlaIII CATG 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 28, 121
Psp6I CCWGG 2 cut(s) 78, 175
PspGI CCWGG 2 cut(s) 78, 175
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 268
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 2 cut(s) 27, 120
Sau96I GGNCC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 80, 177
SduI GDGCHC 1 cut(s) 108
SetI ASST 5 cut(s) 42, 64, 81, 97, 217
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 268
Sse9I AATT 1 cut(s) 277
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 78, 175
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 277
TseI GCWGC 2 cut(s) 26, 119
TspGWI ACGGA 2 cut(s) 91, 261
VpaK11BI GGWCC 1 cut(s) 268
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.