AT3G43860

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008332
Physical Location & Seq
Forward (+)
15706954 .. 15709989
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43860.2

Sequence Viewer

Length: 1461 bp
ATGGCTAATTATAAAGGAAGAGGAAATGTTATGATACGGAGCATGTTATTGGGTCTCTATGGCATCATAAACATTGTGTGTGTCAATGGTACTTTCATAAACTACAAAGATGCTTTAACCAAATCCCTCATCTTCTTGGAGGCTCAAAGATCAGGCAAACTCCCTCCTAATAATAGGGTTCCATGGAGAGGTGACTCTGCTCTCGACGATGGCAAACTCGTAAATGTGGACTTGTCTGGAGGGTACTATGACGCAGGAGACAATGTGAAGTATGGTCTTCCAATGGCGTTCACGATCACAACGCTTGCTTGGTCCACAATTACCTACGAGAAAGAACTTCGAGCCACGGGAGAGCTCGAAAACGCTCGTGCTGCTATCCGTTGGGGTACGGATTATTTCCTCAAATGTGCTTCTCGCAAGAACCGCCTCTATGTTCAGGTTGGTGATCCAAACGCGGACCACCAGTGCTGGGCGAGACCTGAGAACATGAAGACACCAAGGACGGTGTTGGAGATAAGCGATAAAGTTCCAGGAACCGAGATCGCGGCGGAAGCCGCTGCTGCATTCGCCGCTTCCTCCATCGTTTTCCGCCATGTCGACCACAAATATGCACGCCGGCTTCTCAACAAAGCCAAATTGCTTTTCAAGCTAGCCAAAAGCCACAAGGGTACATACGATGGAGAATGCCCCTTCTATTGTTCTAACTCCGGTTACAATGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATCATCTATACCTTAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTTGCCGAATTCAGCTGGGATCTCAAGTACGCTGGTGCGCAGATCCTCATCACCAAGTTGATCTTCGAAGGCCACAAAGGACTTGATCTATACAAACAACAAGCCGATAGTTTTGTATGCTCTAACCTCCCTGGCAGTCCTTACCACCAAGTCTTCACTACCCCAGGTGGTATGATTCACTTGAGGGATGGTGCCAACAGTCAATATGTCACCGCCACCGCCTTCTTGTTCTCGGCCTACGCTGATATACTACAGAAACACAACCAAAAGATCTCTTGCGGTAGCCACCAATTCGATTCAACACACCTCATGGCTTTCGCTAAAAAACAGATTGACTACATACTAGGGCATAACCCACAAGGAAGATCGTACATGGTTGGGTTCGGACCAAACCCACCAAAGCAAGCCCATCACAGAGGAGCCTCAGTGCCCATGCATGAAGCCAACGCGCCGCTAAGCTGCCCATTGAGCTTCGTGAAATGGTACAACAAGAACGTACCTAACGCTAACGAGCTCACCGGAGCCATTTTGGGAGGACCTGACCGTCAAGACAAATTCCAGGATCTCCGATGGACCTCCGTGTACACAGAGCCTTGTACTTACATCAACTCTATCGCCGTTGGTGTTCTCGCTAAGCTCGCTGCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

486

Amino Acids

54.12

Weight (kDa)

9.07

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 35 - 480 7.2e-152 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AasI GACNNNNNNGTC 1 cut(s) 1353
Acc16I TGCGCA 1 cut(s) 849
AccB1I GGYRCC 1 cut(s) 1001
AccI GTMKAC 1 cut(s) 597
AccII CGCG 3 cut(s) 455, 545, 1259
AclWI GGATC 4 cut(s) 440, 837, 847, 1380
AcsI RAATTY 3 cut(s) 788, 818, 1364
AfeI AGCGCT 1 cut(s) 805
AfiI CCNNNNNNNGG 2 cut(s) 188, 469
AgsI TTSAA 2 cut(s) 646, 1110
AjnI CCWGG 4 cut(s) 529, 940, 973, 1368
AjuI GAANNNNNNNTTGG 4 cut(s) 626, 658, 857, 889
AluBI AGCT 8 cut(s) 355, 649, 780, 825, 1269, 1281, 1324, 1447
AluI AGCT 8 cut(s) 355, 649, 780, 825, 1269, 1281, 1324, 1447
Alw21I GWGCWC 2 cut(s) 357, 1326
Alw26I GTCTC 3 cut(s) 59, 252, 469
AlwI GGATC 4 cut(s) 440, 837, 847, 1380
Aor51HI AGCGCT 1 cut(s) 805
AoxI GGCC 2 cut(s) 880, 1044
ApeKI GCWGC 5 cut(s) 371, 557, 560, 1269, 1451
ApoI RAATTY 3 cut(s) 788, 818, 1364
AspLEI GCGC 3 cut(s) 806, 850, 1261
AspS9I GGNCC 5 cut(s) 312, 457, 1196, 1346, 1383
AsuHPI GGTGA 5 cut(s) 203, 455, 853, 1012, 1318
AsuII TTCGAA 2 cut(s) 792, 876
AsuNHI GCTAGC 1 cut(s) 649
AvaII GGWCC 5 cut(s) 312, 457, 1196, 1346, 1383
BaeGI GKGCMC 1 cut(s) 1242
BanI GGYRCC 1 cut(s) 1001
BanII GRGCYC 2 cut(s) 357, 1326
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 3 cut(s) 269, 497, 955
Bbv12I GWGCWC 2 cut(s) 357, 1326
BbvI GCAGC 5 cut(s) 358, 544, 547, 1256, 1438
BccI CCATC 6 cut(s) 203, 587, 671, 992, 1227, 1374
BceAI ACGGC 1 cut(s) 1412
BciT130I CCWGG 4 cut(s) 531, 942, 975, 1370
BcoDI GTCTC 3 cut(s) 59, 252, 469
BfaI CTAG 2 cut(s) 650, 1154
BfmI CTRYAG 1 cut(s) 1061
BfoI RGCGCY 1 cut(s) 807
BglII AGATCT 1 cut(s) 1080
BlpI GCTNAGC 2 cut(s) 1265, 1443
Bme1390I CCNGG 4 cut(s) 531, 942, 975, 1370
Bme18I GGWCC 5 cut(s) 312, 457, 1196, 1346, 1383
BmgT120I GGNCC 5 cut(s) 312, 457, 1196, 1346, 1383
BmiI GGNNCC 5 cut(s) 180, 535, 1003, 1231, 1333
BmrFI CCNGG 4 cut(s) 531, 942, 975, 1370
BmsI GCATC 2 cut(s) 72, 100
BmtI GCTAGC 1 cut(s) 653
BpiI GAAGAC 3 cut(s) 269, 497, 955
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 776
Bpu1102I GCTNAGC 2 cut(s) 1265, 1443
Bpu14I TTCGAA 2 cut(s) 792, 876
BpuEI CTTGAG 2 cut(s) 818, 1012
BsaBI GATNNNNATC 1 cut(s) 857
BsaI GGTCTC 2 cut(s) 59, 469
BsaJI CCNNGG 5 cut(s) 182, 345, 497, 940, 973
BsaWI WCCGGW 2 cut(s) 707, 1328
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 1221, 1251
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 469
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 857
BseBI CCWGG 4 cut(s) 531, 942, 975, 1370
BseDI CCNNGG 5 cut(s) 182, 345, 497, 940, 973
BseGI GGATG 1 cut(s) 1003
BseJI GATNNNNATC 1 cut(s) 857
BseLI CCNNNNNNNGG 2 cut(s) 188, 469
BseMII CTCAG 2 cut(s) 471, 1248
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 1242
BseSI GKGCMC 1 cut(s) 1242
BseXI GCAGC 5 cut(s) 358, 544, 547, 1256, 1438
BseYI CCCAGC 2 cut(s) 468, 825
Bsh1236I CGCG 3 cut(s) 455, 545, 1259
BshFI GGCC 2 cut(s) 882, 1046
BshNI GGYRCC 1 cut(s) 1001
BsiHKAI GWGCWC 2 cut(s) 357, 1326
BsiSI CCGG 3 cut(s) 616, 708, 1329
BslI CCNNNNNNNGG 2 cut(s) 188, 469
BsmAI GTCTC 3 cut(s) 59, 252, 469
BsmI GAATGC 2 cut(s) 563, 689
BsnI GGCC 2 cut(s) 882, 1046
Bso31I GGTCTC 2 cut(s) 59, 469
Bsp119I TTCGAA 2 cut(s) 792, 876
Bsp1286I GDGCHC 3 cut(s) 357, 1242, 1326
Bsp1407I TGTACA 1 cut(s) 1392
Bsp1720I GCTNAGC 2 cut(s) 1265, 1443
Bsp19I CCATGG 1 cut(s) 182
BspANI GGCC 2 cut(s) 882, 1046
BspCNI CTCAG 2 cut(s) 472, 1247
BspFNI CGCG 3 cut(s) 455, 545, 1259
BspLI GGNNCC 5 cut(s) 180, 535, 1003, 1231, 1333
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 4 cut(s) 440, 837, 847, 1380
BspT104I TTCGAA 2 cut(s) 792, 876
BspT107I GGYRCC 1 cut(s) 1001
BspTNI GGTCTC 2 cut(s) 59, 469
BsrFI RCCGGY 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 1392
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 615
BssECI CCNNGG 5 cut(s) 182, 345, 497, 940, 973
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 182, 497
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 4 cut(s) 531, 942, 975, 1370
Bst4CI ACNGT 3 cut(s) 505, 1010, 1355
Bst6I CTCTTC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 1392
BstBI TTCGAA 2 cut(s) 792, 876
BstC8I GCNNGC 6 cut(s) 306, 613, 617, 651, 1215, 1449
BstDEI CTNAG 6 cut(s) 480, 776, 1234, 1265, 1443, 1458
BstDSI CCRYGG 2 cut(s) 182, 345
BstF5I GGATG 1 cut(s) 1003
BstFNI CGCG 3 cut(s) 455, 545, 1259
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 3 cut(s) 806, 850, 1261
BstMAI GTCTC 3 cut(s) 59, 252, 469
BstNI CCWGG 4 cut(s) 531, 942, 975, 1370
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 4 cut(s) 529, 940, 973, 1368
BstSFI CTRYAG 1 cut(s) 1061
BstSLI GKGCMC 1 cut(s) 1242
BstUI CGCG 3 cut(s) 455, 545, 1259
BstV1I GCAGC 5 cut(s) 358, 544, 547, 1256, 1438
BstV2I GAAGAC 3 cut(s) 269, 497, 955
BstX2I RGATCY 4 cut(s) 829, 852, 1080, 1372
BstYI RGATCY 4 cut(s) 829, 852, 1080, 1372
BsuRI GGCC 2 cut(s) 882, 1046
BtgI CCRYGG 2 cut(s) 182, 345
BtsCI GGATG 1 cut(s) 1003
BtsIMutI CAGTG 2 cut(s) 470, 1242
Cac8I GCNNGC 6 cut(s) 306, 613, 617, 651, 1215, 1449
CfoI GCGC 3 cut(s) 806, 850, 1261
Cfr10I RCCGGY 1 cut(s) 615
Cfr13I GGNCC 5 cut(s) 312, 457, 1196, 1346, 1383
CseI GACGC 1 cut(s) 260
CviAII CATG 9 cut(s) 43, 183, 487, 593, 741, 1120, 1183, 1243, 1247
DdeI CTNAG 6 cut(s) 480, 776, 1234, 1265, 1443, 1458
DrdI GACNNNNNNGTC 1 cut(s) 1353
DseDI GACNNNNNNGTC 1 cut(s) 1353
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
EciI GGCGGA 2 cut(s) 563, 578
Ecl136II GAGCTC 2 cut(s) 355, 1324
Eco130I CCWWGG 2 cut(s) 182, 497
Eco24I GRGCYC 2 cut(s) 357, 1326
Eco31I GGTCTC 2 cut(s) 59, 469
Eco47I GGWCC 5 cut(s) 312, 457, 1196, 1346, 1383
Eco47III AGCGCT 1 cut(s) 805
Eco53kI GAGCTC 2 cut(s) 355, 1324
EcoICRI GAGCTC 2 cut(s) 355, 1324
EcoO109I RGGNCCY 1 cut(s) 1346
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 4 cut(s) 529, 940, 973, 1368
EcoT14I CCWWGG 2 cut(s) 182, 497
EcoT22I ATGCAT 1 cut(s) 1248
EcoT38I GRGCYC 2 cut(s) 357, 1326
ErhI CCWWGG 2 cut(s) 182, 497
FaeI CATG 9 cut(s) 46, 186, 490, 596, 744, 1123, 1186, 1246, 1250
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FatI CATG 9 cut(s) 42, 182, 486, 592, 740, 1119, 1182, 1242, 1246
FblI GTMKAC 1 cut(s) 597
FokI GGATG 1 cut(s) 1010
FriOI GRGCYC 2 cut(s) 357, 1326
FspBI CTAG 2 cut(s) 650, 1154
FspI TGCGCA 1 cut(s) 849
GlaI GCGC 3 cut(s) 805, 849, 1260
GsaI CCCAGC 2 cut(s) 472, 829
GsuI CTGGAG 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 2 cut(s) 882, 1046
HapII CCGG 3 cut(s) 616, 708, 1329
HgaI GACGC 1 cut(s) 260
HhaI GCGC 3 cut(s) 806, 850, 1261
Hin1II CATG 9 cut(s) 46, 186, 490, 596, 744, 1123, 1186, 1246, 1250
Hin6I GCGC 3 cut(s) 804, 848, 1259
HinP1I GCGC 3 cut(s) 804, 848, 1259
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 4 cut(s) 194, 763, 985, 1106
HpaII CCGG 3 cut(s) 616, 708, 1329
HphI GGTGA 5 cut(s) 203, 455, 853, 1012, 1318
Hpy166II GTNNAC 6 cut(s) 229, 291, 315, 598, 1393, 1395
Hpy188I TCNGA 2 cut(s) 1196, 1379
Hpy188III TCNNGA 5 cut(s) 203, 237, 292, 1285, 1358
Hpy8I GTNNAC 6 cut(s) 229, 291, 315, 598, 1393, 1395
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 700, 872, 1042
HpyCH4III ACNGT 3 cut(s) 505, 1010, 1355
HpyCH4IV ACGT 2 cut(s) 810, 1305
HpyCH4V TGCA 3 cut(s) 563, 611, 1246
HpyF3I CTNAG 6 cut(s) 480, 776, 1234, 1265, 1443, 1458
HpySE526I ACGT 2 cut(s) 810, 1305
Hsp92II CATG 9 cut(s) 46, 186, 490, 596, 744, 1123, 1186, 1246, 1250
HspAI GCGC 3 cut(s) 804, 848, 1259
KroI GCCGGC 1 cut(s) 615
KroNI GCCGGC 1 cut(s) 617
LmnI GCTCC 3 cut(s) 39, 1229, 1331
Lsp1109I GCAGC 5 cut(s) 358, 544, 547, 1256, 1438
LweI GCATC 2 cut(s) 72, 100
MaeI CTAG 2 cut(s) 650, 1154
MaeII ACGT 2 cut(s) 810, 1305
MaeIII GTNAC 3 cut(s) 191, 710, 1018
MboII GAAGA 7 cut(s) 30, 124, 269, 502, 865, 955, 1185
MflI RGATCY 4 cut(s) 829, 852, 1080, 1372
MhlI GDGCHC 3 cut(s) 357, 1242, 1326
MluCI AATT 7 cut(s) 7, 318, 635, 788, 818, 1100, 1364
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 1248
MroNI GCCGGC 1 cut(s) 615
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 2 cut(s) 557, 825
MspI CCGG 3 cut(s) 616, 708, 1329
MspR9I CCNGG 4 cut(s) 531, 942, 975, 1370
Mva1269I GAATGC 2 cut(s) 563, 689
MvaI CCWGG 4 cut(s) 531, 942, 975, 1370
MvnI CGCG 3 cut(s) 455, 545, 1259
NaeI GCCGGC 1 cut(s) 617
NcoI CCATGG 1 cut(s) 182
NgoMIV GCCGGC 1 cut(s) 615
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 9 cut(s) 46, 186, 490, 596, 744, 1123, 1186, 1246, 1250
NlaIV GGNNCC 5 cut(s) 180, 535, 1003, 1231, 1333
NmeAIII GCCGAG 1 cut(s) 1022
NmuCI GTSAC 2 cut(s) 191, 1018
NsbI TGCGCA 1 cut(s) 849
NsiI ATGCAT 1 cut(s) 1248
NspI RCATGY 1 cut(s) 46
NspV TTCGAA 2 cut(s) 792, 876
PctI GAATGC 2 cut(s) 563, 689
PdiI GCCGGC 1 cut(s) 617
PfeI GAWTC 3 cut(s) 763, 985, 1106
PfoI TCCNGGA 2 cut(s) 529, 1368
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 1346
PsiI TTATAA 1 cut(s) 12
Psp124BI GAGCTC 2 cut(s) 357, 1326
Psp5II RGGWCCY 1 cut(s) 1346
Psp6I CCWGG 4 cut(s) 529, 940, 973, 1368
PspFI CCCAGC 2 cut(s) 468, 825
PspGI CCWGG 4 cut(s) 529, 940, 973, 1368
PspN4I GGNNCC 5 cut(s) 180, 535, 1003, 1231, 1333
PspPI GGNCC 5 cut(s) 312, 457, 1196, 1346, 1383
PspPPI RGGWCCY 1 cut(s) 1346
PsuI RGATCY 4 cut(s) 829, 852, 1080, 1372
PvuII CAGCTG 1 cut(s) 825
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 2 cut(s) 357, 1326
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 1 cut(s) 116
Sau96I GGNCC 5 cut(s) 312, 457, 1196, 1346, 1383
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 4 cut(s) 531, 942, 975, 1370
SduI GDGCHC 3 cut(s) 357, 1242, 1326
SfaNI GCATC 2 cut(s) 72, 100
SfcI CTRYAG 1 cut(s) 1061
SfuI TTCGAA 2 cut(s) 792, 876
SinI GGWCC 5 cut(s) 312, 457, 1196, 1346, 1383
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 2 cut(s) 833, 991
SmoI CTYRAG 2 cut(s) 833, 991
Sse9I AATT 7 cut(s) 7, 318, 635, 788, 818, 1100, 1364
SspMI CTAG 2 cut(s) 650, 1154
SstI GAGCTC 2 cut(s) 357, 1326
StyD4I CCNGG 4 cut(s) 529, 940, 973, 1368
StyI CCWWGG 2 cut(s) 182, 497
TaaI ACNGT 3 cut(s) 505, 1010, 1355
TaiI ACGT 2 cut(s) 813, 1308
TaqI TCGA 7 cut(s) 204, 340, 357, 597, 792, 876, 1104
TasI AATT 7 cut(s) 7, 318, 635, 788, 818, 1100, 1364
TatI WGTACW 2 cut(s) 1392, 1406
TauI GCSGC 6 cut(s) 548, 557, 572, 737, 1264, 1457
TfiI GAWTC 3 cut(s) 763, 985, 1106
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 470, 1242
TseFI GTSAC 2 cut(s) 191, 1018
TseI GCWGC 5 cut(s) 371, 557, 560, 1269, 1451
Tsp45I GTSAC 2 cut(s) 191, 1018
TspDTI ATGAA 3 cut(s) 85, 503, 1263
TspGWI ACGGA 4 cut(s) 52, 368, 404, 1378
TspRI CASTG 2 cut(s) 470, 1242
VpaK11BI GGWCC 5 cut(s) 312, 457, 1196, 1346, 1383
XapI RAATTY 3 cut(s) 788, 818, 1364
XceI RCATGY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 2 cut(s) 650, 1154
Zsp2I ATGCAT 1 cut(s) 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.