Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008332

Physical Location & Seq

Genomic Coordinates Reverse (-)

4609756 .. 4610416

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATAGTAAGACTGTTCTTTGATGGTGAAAAATCCCTAGAAAACTACAAAAACGGAGCCGACAGTTACATTTGCTCAAACATCCCCGACAGCCCTTACCACCAAATCACAATGACACCGGGCGGTATGATCGATCACTTGAGAGACGGAGCCAACACCCAATACGTCACCGGAACAGCCCACTTATTCGCCGTCTACAGCGATATCCTCGCCCAACACAACCAAAAAGTCAACTGCGGAGGCAAAGAGTTCGACTCCGCCGCCCTCATGGCCTTTGCCAAGAAGCAAATGGACTACTTGTTGGGTGATAATCCCAAAAAAAGATCCTACATGGTCGGGTTTGGACCCAACGCGCCCCAACAACCCCACCACAGAGGAGCTTCGGTTCCGAAGGCGGAAAACGGCCTCGTTAACTGCGCCATGAGCTTCGTGTACTGGTTCAAGAAGGATGTGCCAAACCCTAATGAGTTGACTGGTGCCATCGTCGGTGGGCCCGATAGGTTTGATAACTTCGAGGACAAACGTTGGGCGTCGTCGTATACCGAGCCATGCACTTACGTGAACTCGCTCGCGGTCGGACCACTGGCGAAGCTTGCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

201

Amino Acids

22.03

Weight (kDa)

6.58

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43860 AT3G43860
fragaria_vesca	FvH4_2g30880
malus_domestica	MD08G1072800.v1.1 MD15G1049000.v1.1
prunus_persica	Prupe.1G403300_v2.0.a1
pyrus_communis	pycom08g06010 pycom15g04780
rosa_chinensis	RchiOBHm_Chr6g0311961
rosa_laevigata	RLG00000010365
rosa_multiflora	Rmu_sc0005381.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157180
rosa_rugosa	Rorug06G0391600 Rorug06G0391600 Rorug06G0391600 Rorug06G0391600 Rorug06G0391600 Rorug06G0391600
rosa_samantha	Rh6AG508200 Rh6BG519500 Rh6CG525300 Rh6DG510900
rosa_wichuraiana	Rw6G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	2 cut(s)	195, 539
AccII	CGCG	2 cut(s)	353, 572
AciI	CCGC	7 cut(s)	123, 237, 258, 261, 395, 572, 596
AclI	AACGTT	1 cut(s)	523
AclWI	GGATC	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	530
AfaI	GTAC	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	442
AleI	CACNNNNGTG	1 cut(s)	557
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	3 cut(s)	380, 426, 592
AluI	AGCT	3 cut(s)	380, 426, 592
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	4 cut(s)	270, 403, 491, 597
ApaI	GGGCCC	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	355, 419
AspS9I	GGNCC	4 cut(s)	344, 491, 492, 578
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	38, 160, 317
AvaII	GGWCC	2 cut(s)	344, 578
BaeGI	GKGCMC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	495
BccI	CCATC	2 cut(s)	17, 488
BceAI	ACGGC	2 cut(s)	176, 418
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	261, 597
BlsI	GCNGC	2 cut(s)	262, 598
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	2 cut(s)	344, 578
BmgT120I	GGNCC	4 cut(s)	344, 491, 492, 578
BmiI	GGNNCC	6 cut(s)	58, 151, 346, 387, 478, 493
BmrFI	CCNGG	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	530
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	3 cut(s)	440, 478, 588
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	2 cut(s)	81, 454
BseNI	ACTGG	3 cut(s)	440, 478, 588
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	495
Bsh1236I	CGCG	2 cut(s)	353, 572
Bsh1285I	CGRYCG	1 cut(s)	576
BshFI	GGCC	4 cut(s)	272, 405, 493, 599
BshNI	GGYRCC	1 cut(s)	476
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	119, 171
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	4 cut(s)	272, 405, 493, 599
Bsp120I	GGGCCC	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	129, 133, 323
BspACI	CCGC	7 cut(s)	123, 237, 258, 261, 395, 572, 596
BspANI	GGCC	4 cut(s)	272, 405, 493, 599
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	353, 572
BspLI	GGNNCC	6 cut(s)	58, 151, 346, 387, 478, 493
BspPI	GGATC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	440, 478, 588
BssMI	GATC	3 cut(s)	129, 133, 323
BssNAI	GTATAC	1 cut(s)	540
BssNI	GRCGYC	1 cut(s)	530
Bst1107I	GTATAC	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	15, 65
BstACI	GRCGYC	1 cut(s)	530
BstBAI	YACGTR	1 cut(s)	559
BstC8I	GCNNGC	2 cut(s)	570, 594
BstF5I	GGATG	2 cut(s)	81, 454
BstFNI	CGCG	2 cut(s)	353, 572
BstHHI	GCGC	2 cut(s)	355, 419
BstKTI	GATC	3 cut(s)	132, 136, 326
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	3 cut(s)	129, 133, 323
BstMCI	CGRYCG	1 cut(s)	576
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 423, 593
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	2 cut(s)	353, 572
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BstZ17I	GTATAC	1 cut(s)	540
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	272, 405, 493, 599
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	81, 454
BtsIMutI	CAGTG	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	570, 594
CfoI	GCGC	2 cut(s)	355, 419
Cfr13I	GGNCC	4 cut(s)	344, 491, 492, 578
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	4 cut(s)	268, 331, 421, 549
CviQI	GTAC	1 cut(s)	433
DpnI	GATC	3 cut(s)	131, 135, 325
DpnII	GATC	3 cut(s)	129, 133, 323
EciI	GGCGGA	2 cut(s)	247, 410
Eco24I	GRGCYC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	344, 578
EcoRV	GATATC	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	4 cut(s)	271, 334, 424, 552
FaiI	YATR	6 cut(s)	128, 269, 332, 422, 540, 550
FatI	CATG	4 cut(s)	267, 330, 420, 548
FblI	GTMKAC	2 cut(s)	195, 539
Fnu4HI	GCNGC	2 cut(s)	261, 597
FokI	GGATG	2 cut(s)	68, 461
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	2 cut(s)	261, 597
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	2 cut(s)	354, 418
GluI	GCNGC	2 cut(s)	261, 597
HaeIII	GGCC	4 cut(s)	272, 405, 493, 599
HapII	CCGG	2 cut(s)	119, 171
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	2 cut(s)	355, 419
Hin1I	GRCGYC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	271, 334, 424, 552
Hin6I	GCGC	2 cut(s)	353, 417
HinP1I	GCGC	2 cut(s)	353, 417
HincII	GTYRAC	3 cut(s)	232, 412, 471
HindII	GTYRAC	3 cut(s)	232, 412, 471
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	1 cut(s)	254
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	2 cut(s)	119, 171
HphI	GGTGA	3 cut(s)	38, 160, 317
Hpy166II	GTNNAC	7 cut(s)	196, 232, 412, 433, 471, 540, 562
Hpy188I	TCNGA	2 cut(s)	390, 578
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	7 cut(s)	196, 232, 412, 433, 471, 540, 562
Hpy99I	CGWCG	3 cut(s)	488, 535, 538
HpyAV	CCTTC	2 cut(s)	385, 439
HpyCH4III	ACNGT	2 cut(s)	15, 65
HpyCH4IV	ACGT	3 cut(s)	165, 523, 558
HpyCH4V	TGCA	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 423, 593
HpySE526I	ACGT	3 cut(s)	165, 523, 558
Hsp92I	GRCGYC	1 cut(s)	530
Hsp92II	CATG	4 cut(s)	271, 334, 424, 552
HspAI	GCGC	2 cut(s)	353, 417
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	129, 133, 323
LmnI	GCTCC	3 cut(s)	56, 149, 377
LpnPI	CCDG	5 cut(s)	132, 184, 421, 459, 569
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	3 cut(s)	165, 523, 558
MaeIII	GTNAC	2 cut(s)	65, 166
MalI	GATC	3 cut(s)	131, 135, 325
MboI	GATC	3 cut(s)	129, 133, 323
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	6 cut(s)	218, 233, 275, 368, 416, 508
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	557
MspI	CCGG	2 cut(s)	119, 171
MspR9I	CCNGG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	353, 572
MwoI	GCNNNNNNNGC	3 cut(s)	269, 423, 593
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	129, 133, 323
NlaIII	CATG	4 cut(s)	271, 334, 424, 552
NlaIV	GGNNCC	6 cut(s)	58, 151, 346, 387, 478, 493
NmuCI	GTSAC	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	262, 598
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	559
Psp1406I	AACGTT	1 cut(s)	523
PspN4I	GGNNCC	6 cut(s)	58, 151, 346, 387, 478, 493
PspOMI	GGGCCC	1 cut(s)	491
PspPI	GGNCC	4 cut(s)	344, 491, 492, 578
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	261, 597
Sau3AI	GATC	3 cut(s)	129, 133, 323
Sau96I	GGNCC	4 cut(s)	344, 491, 492, 578
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	7 cut(s)	168, 382, 428, 503, 526, 561, 594
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	344, 578
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SsiI	CCGC	7 cut(s)	123, 237, 258, 261, 395, 572, 596
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	15, 65
TaiI	ACGT	3 cut(s)	168, 526, 561
TaqI	TCGA	3 cut(s)	132, 252, 513
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	2 cut(s)	263, 599
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	2 cut(s)	69, 162
TspRI	CASTG	1 cut(s)	588
VpaK11BI	GGWCC	2 cut(s)	344, 578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmiI	GTMKAC	2 cut(s)	195, 539
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.