AT3G46750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016710
Physical Location & Seq
Forward (+)
17219741 .. 17221772
2032 bp
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UTR
Exon/CDS
Intron
AT3G46750.1

Sequence Viewer

Length: 1167 bp
ATGTCGCGTCAACTAGACCCCGTCGCTGAGCTCGAAAGCTTAAAAACACATGTTGATCATTCTGGAAATCCTAGCTTCTCAACACTTAGCCAGCGTCACCAATCTGGTGAAGCTTCAAAGCGGTCACCTTCTGGTTCACCAAGAAAAGAAAATGATGGAGAACATTCTCACCATAAGAAATCTTTGTTCTCTAAAATGAAGGATAAGGCGAAAAAACTGCAGCACAGTCTCAGCACCAAGAAGAGACATGATGAAGAAGGTGATGCAACCATGTCACCGTTTTGCAGATCCGAAGATCATGAAGTTAGAGAAGTTGGTTATGCGTCATTGTCACCACGTGACAAGTCAAAAGACCGTAAAGTCAGAGAAGAAGGAGGAGAAGAAGAAGAAGAAGATCCTGAATATCTTGGAGCCCCAATGTATGAATCAAAGAAGGCACCTGAAGAGTTAAAGGAGACAGCAAGGCAGCATCCCCGAGAGAATCCTGTGATCACTGAGACAAATGTCTTGTCTGTTCTCCCAGCCAAACAGGACGCTGAACAAGAACAAAAAGATTGTAATGGTTCCAAAACAGAACATCCTGTGATCTCTGAGAAGAATGTTTTATCTGATGTCAAGCAAGAGAAGCCTGCTGATTCTGACACAACAACAATAGTAACAGAATCGTCTGAGAAGACAAGGAAAGAGTGCACGAGCCAGCAGGAACCTATTAGTCCAAGCAAGACAGTAACAGAAACTGTGACAGAGAAGCTAGCACCTGGTTATGCTAAAGTCTCTGACGCAACTCAAGCTATAACTAAGAAGATTCAAGATATGGCTTTTCCAGAACCAACAGAGCGAGAAGAAGAGGTAAATGATGTTGCAGAAATCAACACTGCCGGAACTAACCAGCCCACTGGCTTCAATACCAAGGTATGGGACAAAGGCGTATCAATGAAGGAATACATATCGCAGAAGTTTGAGCCTAGCGAAGACGATAGAGAACTTTCTCGAGTGATATCTAAAGCTATCAGTCCTCGTAAAGGTTCTTCTCAGACTTCTAGTTTTGGTGCAGCCACAAACATGGCACCTGCTTCAAATTCAGCAGACAACAAAGCTCCTCTTGTAGCCAACACAAATGAAATTGTTGAAGCAGAAAATCATGGAAAGATACTTCAACCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

42.95

Weight (kDa)

5.48

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTI65_LTI78_N PF23403 55 - 145 8.8e-07 LTI65/LTI78 CAP160 N-terminal
LTI65_PGEED PF23399 307 - 337 3.9e-15 LTI65/LTI78 PGEED repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016710)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46750
fragaria_vesca FvH4_3g36910
malus_domestica MD11G1095400.v1.1
prunus_persica Prupe.6G070900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066301
rosa_laevigata RLG00000035849
rosa_multiflora Rmu_sc0006887.1_g000013
rosa_roxburghii Rroxscaffold_1G00014820
rosa_rugosa Rorug05G0377000
rosa_samantha Rh5AG435600 Rh5BG451800 Rh5CG474100 Rh5DG466700
rosa_wichuraiana Rw5G040790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1078
AasI GACNNNNNNGTC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 1078
AccB1I GGYRCC 2 cut(s) 436, 1066
AccB7I CCANNNNNTGG 1 cut(s) 915
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 121
AclWI GGATC 2 cut(s) 282, 389
AcsI RAATTY 1 cut(s) 1078
AcuI CTGAAG 1 cut(s) 462
AcvI CACGTG 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 915, 1022
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 6 cut(s) 117, 809, 904, 1077, 1130, 1157
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 8 cut(s) 31, 39, 75, 113, 751, 791, 1007, 1097
AluI AGCT 8 cut(s) 31, 39, 75, 113, 751, 791, 1007, 1097
Alw21I GWGCWC 2 cut(s) 33, 692
Alw26I GTCTC 5 cut(s) 233, 238, 449, 491, 778
Alw44I GTGCAC 1 cut(s) 688
AlwI GGATC 2 cut(s) 282, 389
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 2 cut(s) 474, 990
ApaLI GTGCAC 1 cut(s) 688
ApeKI GCWGC 3 cut(s) 220, 466, 1052
ApoI RAATTY 1 cut(s) 1078
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AsuHPI GGTGA 8 cut(s) 89, 117, 119, 129, 161, 267, 272, 324
AsuNHI GCTAGC 1 cut(s) 751
AvaI CYCGRG 2 cut(s) 474, 990
BaeGI GKGCMC 1 cut(s) 692
BanI GGYRCC 2 cut(s) 436, 1066
BanII GRGCYC 2 cut(s) 33, 415
BarI GAAGNNNNNNTAC 2 cut(s) 1012, 1044
BauI CACGAG 1 cut(s) 691
BbrPI CACGTG 1 cut(s) 338
BbsI GAAGAC 2 cut(s) 680, 978
Bbv12I GWGCWC 2 cut(s) 33, 692
BbvI GCAGC 3 cut(s) 232, 478, 1064
BccI CCATC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 1 cut(s) 759
BclI TGATCA 2 cut(s) 55, 489
BcoDI GTCTC 5 cut(s) 233, 238, 449, 491, 778
BfaI CTAG 5 cut(s) 14, 72, 752, 966, 1041
BfmI CTRYAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 1078
BisI GCNGC 3 cut(s) 221, 467, 1053
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 3 cut(s) 222, 468, 1054
Bme1390I CCNGG 1 cut(s) 759
BmeT110I CYCGRG 2 cut(s) 474, 990
BmiI GGNNCC 5 cut(s) 412, 438, 565, 705, 1068
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 2 cut(s) 253, 478
BmtI GCTAGC 1 cut(s) 755
BoxI GACNNNNGTC 1 cut(s) 503
BpiI GAAGAC 2 cut(s) 680, 978
Bpu1102I GCTNAGC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 909
Bsc4I CCNNNNNNNGG 2 cut(s) 915, 1022
Bse1I ACTGG 1 cut(s) 901
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 1 cut(s) 909
BseGI GGATG 2 cut(s) 469, 577
BseLI CCNNNNNNNGG 2 cut(s) 915, 1022
BseMII CTCAG 6 cut(s) 18, 244, 486, 582, 660, 1046
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 2 cut(s) 390, 1089
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 3 cut(s) 232, 478, 1064
BseYI CCCAGC 1 cut(s) 520
BsgI GTGCAG 1 cut(s) 1071
Bsh1236I CGCG 1 cut(s) 7
BshNI GGYRCC 2 cut(s) 436, 1066
BsiHKAI GWGCWC 2 cut(s) 33, 692
BsiHKCI CYCGRG 2 cut(s) 474, 990
BsiSI CCGG 1 cut(s) 879
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 2 cut(s) 915, 1022
BsmAI GTCTC 5 cut(s) 233, 238, 449, 491, 778
BsmFI GGGAC 1 cut(s) 932
BsoBI CYCGRG 2 cut(s) 474, 990
Bsp1286I GDGCHC 3 cut(s) 33, 415, 692
Bsp143I GATC 6 cut(s) 55, 287, 295, 394, 489, 585
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 1 cut(s) 121
BspCNI CTCAG 6 cut(s) 19, 243, 487, 583, 661, 1045
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 5 cut(s) 412, 438, 565, 705, 1068
BspMAI CTGCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 1078
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 2 cut(s) 282, 389
BspT107I GGYRCC 2 cut(s) 436, 1066
BsrI ACTGG 1 cut(s) 901
BssECI CCNNGG 1 cut(s) 909
BssMI GATC 6 cut(s) 55, 287, 295, 394, 489, 585
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 5 cut(s) 227, 279, 356, 727, 739
Bst6I CTCTTC 3 cut(s) 236, 438, 840
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 4 cut(s) 92, 630, 698, 753
BstDEI CTNAG 8 cut(s) 27, 86, 230, 495, 591, 669, 798, 1032
BstEII GGTNACC 1 cut(s) 123
BstENI CCTNNNNNAGG 1 cut(s) 1020
BstF5I GGATG 2 cut(s) 469, 577
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 6 cut(s) 58, 290, 298, 397, 492, 588
BstMAI GTCTC 5 cut(s) 233, 238, 449, 491, 778
BstMBI GATC 6 cut(s) 55, 287, 295, 394, 489, 585
BstMWI GCNNNNNNNGC 2 cut(s) 625, 788
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 53
BstPAI GACNNNNGTC 1 cut(s) 503
BstPI GGTNACC 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 692
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 232, 478, 1064
BstV2I GAAGAC 2 cut(s) 680, 978
BstX2I RGATCY 2 cut(s) 287, 394
BstXI CCANNNNNNTGG 2 cut(s) 896, 1063
BstYI RGATCY 2 cut(s) 287, 394
BtsCI GGATG 2 cut(s) 469, 577
BtsI GCAGTG 1 cut(s) 873
BtsIMutI CAGTG 3 cut(s) 492, 873, 894
BveI ACCTGC 1 cut(s) 1078
Cac8I GCNNGC 4 cut(s) 92, 630, 698, 753
CaiI CAGNNNCTG 1 cut(s) 737
CciI TCATGA 1 cut(s) 298
CseI GACGC 4 cut(s) 83, 312, 542, 788
CsiI ACCWGGT 1 cut(s) 757
CviAII CATG 6 cut(s) 50, 248, 271, 299, 1063, 1142
DdeI CTNAG 8 cut(s) 27, 86, 230, 495, 591, 669, 798, 1032
DpnI GATC 6 cut(s) 57, 289, 297, 396, 491, 587
DpnII GATC 6 cut(s) 55, 287, 295, 394, 489, 585
DraIII CACNNNGTG 1 cut(s) 338
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
Eam1104I CTCTTC 3 cut(s) 236, 438, 840
EarI CTCTTC 3 cut(s) 236, 438, 840
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 909
Eco24I GRGCYC 2 cut(s) 33, 415
Eco32I GATATC 1 cut(s) 999
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 462
Eco72I CACGTG 1 cut(s) 338
Eco88I CYCGRG 2 cut(s) 474, 990
Eco91I GGTNACC 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 31
EcoNI CCTNNNNNAGG 1 cut(s) 1020
EcoO65I GGTNACC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 999
EcoT14I CCWWGG 1 cut(s) 909
EcoT38I GRGCYC 2 cut(s) 33, 415
ErhI CCWWGG 1 cut(s) 909
FaeI CATG 6 cut(s) 53, 251, 274, 302, 1066, 1145
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FaqI GGGAC 1 cut(s) 932
FatI CATG 6 cut(s) 49, 247, 270, 298, 1062, 1141
FbaI TGATCA 2 cut(s) 55, 489
Fnu4HI GCNGC 3 cut(s) 221, 467, 1053
FokI GGATG 2 cut(s) 456, 564
FriOI GRGCYC 2 cut(s) 33, 415
Fsp4HI GCNGC 3 cut(s) 221, 467, 1053
FspBI CTAG 5 cut(s) 14, 72, 752, 966, 1041
GluI GCNGC 3 cut(s) 221, 467, 1053
GsaI CCCAGC 1 cut(s) 524
HapII CCGG 1 cut(s) 879
HgaI GACGC 4 cut(s) 83, 312, 542, 788
Hin1II CATG 6 cut(s) 53, 251, 274, 302, 1066, 1145
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HindIII AAGCTT 2 cut(s) 37, 111
HinfI GANTC 5 cut(s) 425, 481, 635, 662, 805
HpaII CCGG 1 cut(s) 879
HphI GGTGA 8 cut(s) 89, 117, 119, 129, 161, 267, 272, 324
Hpy166II GTNNAC 3 cut(s) 11, 137, 690
Hpy188I TCNGA 8 cut(s) 292, 365, 592, 610, 640, 670, 778, 1035
Hpy188III TCNNGA 6 cut(s) 63, 299, 398, 809, 824, 990
Hpy8I GTNNAC 3 cut(s) 11, 137, 690
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 6 cut(s) 138, 193, 251, 365, 427, 931
HpyCH4III ACNGT 5 cut(s) 227, 279, 356, 727, 739
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 6 cut(s) 220, 266, 285, 690, 863, 1052
HpyF10VI GCNNNNNNNGC 2 cut(s) 625, 788
HpyF3I CTNAG 8 cut(s) 27, 86, 230, 495, 591, 669, 798, 1032
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 6 cut(s) 53, 251, 274, 302, 1066, 1145
Ksp22I TGATCA 2 cut(s) 55, 489
Kzo9I GATC 6 cut(s) 55, 287, 295, 394, 489, 585
LmnI GCTCC 2 cut(s) 410, 1102
Lsp1109I GCAGC 3 cut(s) 232, 478, 1064
LweI GCATC 2 cut(s) 253, 478
MabI ACCWGGT 1 cut(s) 757
MaeI CTAG 5 cut(s) 14, 72, 752, 966, 1041
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 8 cut(s) 95, 123, 273, 330, 338, 655, 727, 739
MalI GATC 6 cut(s) 57, 289, 297, 396, 491, 587
MboI GATC 6 cut(s) 55, 287, 295, 394, 489, 585
MflI RGATCY 2 cut(s) 287, 394
MhlI GDGCHC 3 cut(s) 33, 415, 692
MluCI AATT 2 cut(s) 1078, 1122
MnlI CCTC 4 cut(s) 368, 841, 1026, 1110
MseI TTAA 2 cut(s) 41, 449
MslI CAYNNNNRTG 1 cut(s) 1061
MspI CCGG 1 cut(s) 879
MspR9I CCNGG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 625, 788
NdeII GATC 6 cut(s) 55, 287, 295, 394, 489, 585
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 6 cut(s) 53, 251, 274, 302, 1066, 1145
NlaIV GGNNCC 5 cut(s) 412, 438, 565, 705, 1068
NmuCI GTSAC 6 cut(s) 95, 123, 273, 330, 338, 739
NspI RCATGY 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 990
PagI TCATGA 1 cut(s) 298
PaqCI CACCTGC 1 cut(s) 1078
PciI ACATGT 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 5 cut(s) 425, 481, 635, 662, 805
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 915
PkrI GCNGC 3 cut(s) 222, 468, 1054
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 338
PscI ACATGT 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 757
PspCI CACGTG 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 5 cut(s) 412, 438, 565, 705, 1068
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 2 cut(s) 287, 394
PsyI GACNNNGTC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 1061
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 41, 449
SatI GCNGC 3 cut(s) 221, 467, 1053
Sau3AI GATC 6 cut(s) 55, 287, 295, 394, 489, 585
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 3 cut(s) 33, 415, 692
SexAI ACCWGGT 1 cut(s) 757
SfaNI GCATC 2 cut(s) 253, 478
SfcI CTRYAG 1 cut(s) 218
Sfr274I CTCGAG 1 cut(s) 990
SlaI CTCGAG 1 cut(s) 990
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 2 cut(s) 786, 990
SmoI CTYRAG 2 cut(s) 786, 990
Sse9I AATT 2 cut(s) 1078, 1122
SsiI CCGC 1 cut(s) 121
SspMI CTAG 5 cut(s) 14, 72, 752, 966, 1041
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 5 cut(s) 227, 279, 356, 727, 739
TaiI ACGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 33, 991
TasI AATT 2 cut(s) 1078, 1122
TfiI GAWTC 5 cut(s) 425, 481, 635, 662, 805
Tru1I TTAA 2 cut(s) 41, 449
Tru9I TTAA 2 cut(s) 41, 449
TscAI CASTG 3 cut(s) 499, 880, 901
TseFI GTSAC 6 cut(s) 95, 123, 273, 330, 338, 739
TseI GCWGC 3 cut(s) 220, 466, 1052
Tsp45I GTSAC 6 cut(s) 95, 123, 273, 330, 338, 739
TspDTI ATGAA 6 cut(s) 212, 267, 315, 438, 950, 1134
TspRI CASTG 3 cut(s) 499, 880, 901
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 915
VneI GTGCAC 1 cut(s) 688
XagI CCTNNNNNAGG 1 cut(s) 1020
XapI RAATTY 1 cut(s) 1078
XceI RCATGY 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 990
XspI CTAG 5 cut(s) 14, 72, 752, 966, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.