Prupe.6G070900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016710
Physical Location & Seq
Reverse (-)
4852268 .. 4855184
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G070900.1

Sequence Viewer

Length: 1398 bp
ATGGCACAACTCGAACGCGTGCAAAGACATGGCGACTCTGAAACTACTACCACCCATGAGCCCAAAAAACTTACTACCAGTACAAGCCCAACTATGGAACATTATCTTCGAGGAGGTGAAGCTTTAAAGTCGTCACCAGCATCCTCATCCTCATCATCTCCACTTGGGTACCATGATCAAGAAGACGATCACGGACACCATCACAAGAAATCTGTTCTCACTAAGGTGAAAGAGAAAGCCAAGAAACTGCGGCACTCACTCAGTCACAAGAAGAAGCATATGGAAGGTGATAACAGCACCCCCACTTTGGGTGCAAGCATGAATGAGCATGAAGACGAAGAACAAGATGCTGAATATCTAGGAGCCCCAATGTATGAATCAGAGCTGGCACCTGAGGGATACAAGGAGACCGCAAAGCTACATCCCAGAGCAGTTCCTGTGATTTCTGAGAAGCATGTTTTGCCAAGTAGTGTCAATCAAGATGCTGAACAAGATAAGGAGAAGCCTCTTAGTCCAAACAAGACAGTAACCGAAACTGCAGCCGTGAAGTCTCTTAGTCCTAACGAGACAGTTACCGAAACTGTGGCCAAGAAGCCTCCTAGTCCTAGCAAGTCAGTAGCTGAAACTGTAAAGCCTCCTAGTCCTAAGAAGACAATAACTGAAACCGTCACTGAGAAGTTAGGACCAGCCTATGCCACAGTATCAGATACAACCCATGCCATTGCCTCAAAGATAGAAGGTCTCACTGTTTCAGCCCCTGCTGCAGTAGCAGATGCAACCCACGCCATTGCCTCAAAGGTAGGTCTCACTGTTGCAGCCCCAACACCTTCAGAAAACAATGAATCCCTGGAAGCTCCTCACACTTCTTTAGCAGTATCAGCTCCAAAAAACTCTTCATCCCAGGCAGCTCAACAAACCTTGGCAGCCTCAGAGGCACCGCAACCTTTGTCAGCCCCAGCAGCTCCACAAGGTGGAAAGCATGCTGGTAGCAGTGACCAAATATGGGATAAGGGTGTTTCTGTGAAGGAGTATTTGGCCCAAAAGTTTGAGCCTGGGGAAGATGAGAGAGCACTGTCAAGAGTGATATCTGATGTAATGAGTCCAAGGACAAGTCCCAGTGGTGAGGTTGGCATGGTGGGAAAGGTGAAAGGGGCTATAACTTCCTTGCTTCGGAACGATGAGTCGCCCAAAACTACTACCTCACAATCAGCCATGACGACATCACCAAGCTCACAACCAGCCATGACCTCATCATCACCTCGCTCACAATCAGCCATGACCTCATCATCACCACACTCACAATCAGCCAAGGCCTCATCACCTCGCATTCCGGTCTCTACCAATGCATATGAAGTCGTCGAGGAAGAAAATAAGGGAAGAATACTACAGACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

466

Amino Acids

49.21

Weight (kDa)

6.36

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016710)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46750
fragaria_vesca FvH4_3g36910
malus_domestica MD11G1095400.v1.1
prunus_persica Prupe.6G070900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066301
rosa_laevigata RLG00000035849
rosa_multiflora Rmu_sc0006887.1_g000013
rosa_roxburghii Rroxscaffold_1G00014820
rosa_rugosa Rorug05G0377000
rosa_samantha Rh5AG435600 Rh5BG451800 Rh5CG474100 Rh5DG466700
rosa_wichuraiana Rw5G040790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 3 cut(s) 168, 388, 934
AccB7I CCANNNNNTGG 1 cut(s) 971
AccII CGCG 1 cut(s) 18
AciI CCGC 3 cut(s) 250, 411, 938
AcoI YGGCCR 1 cut(s) 585
AcuI CTGAAG 1 cut(s) 813
AdeI CACNNNGTG 1 cut(s) 971
AfaI GTAC 2 cut(s) 82, 170
AfiI CCNNNNNNNGG 6 cut(s) 94, 307, 308, 971, 1003, 1170
AflIII ACRYGT 1 cut(s) 16
AjnI CCWGG 3 cut(s) 846, 900, 1051
AjuI GAANNNNNNNTTGG 4 cut(s) 877, 909, 1016, 1048
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 9 cut(s) 122, 385, 418, 620, 854, 881, 908, 962, 1230
AluI AGCT 9 cut(s) 122, 385, 418, 620, 854, 881, 908, 962, 1230
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 6 cut(s) 401, 555, 560, 746, 809, 1339
AlwNI CAGNNNCTG 3 cut(s) 437, 620, 758
AoxI GGCC 3 cut(s) 585, 1035, 1311
ApeKI GCWGC 6 cut(s) 539, 761, 815, 905, 923, 959
Asp718I GGTACC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 683, 1036
AvaII GGWCC 1 cut(s) 683
AxyI CCTNAGG 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BalI TGGCCA 1 cut(s) 587
BanI GGYRCC 3 cut(s) 168, 388, 934
BanII GRGCYC 2 cut(s) 63, 367
BbsI GAAGAC 3 cut(s) 189, 339, 656
Bbv12I GWGCWC 1 cut(s) 1072
BbvI GCAGC 6 cut(s) 551, 748, 827, 917, 935, 971
BccI CCATC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 527
BciT130I CCWGG 3 cut(s) 848, 902, 1053
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 6 cut(s) 401, 555, 560, 746, 809, 1339
BfaI CTAG 4 cut(s) 359, 600, 606, 639
BfmI CTRYAG 3 cut(s) 537, 762, 1385
BfuI GTATCC 1 cut(s) 392
BglI GCCNNNNNGGC 1 cut(s) 932
BisI GCNGC 7 cut(s) 251, 540, 762, 816, 906, 924, 960
BlsI GCNGC 7 cut(s) 252, 541, 763, 817, 907, 925, 961
Bme1390I CCNGG 3 cut(s) 848, 902, 1053
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 683, 1036
BmiI GGNNCC 4 cut(s) 170, 364, 390, 936
BmrFI CCNGG 3 cut(s) 848, 902, 1053
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 4 cut(s) 149, 337, 472, 763
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 3 cut(s) 189, 339, 656
BsaI GGTCTC 4 cut(s) 401, 746, 809, 1339
BsaJI CCNNGG 6 cut(s) 846, 900, 918, 1052, 1103, 1308
BsaWI WCCGGW 1 cut(s) 1330
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 307, 308, 971, 1003, 1170
Bse1I ACTGG 2 cut(s) 78, 1116
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 2 cut(s) 720, 786
BseBI CCWGG 3 cut(s) 848, 902, 1053
BseDI CCNNGG 6 cut(s) 846, 900, 918, 1052, 1103, 1308
BseGI GGATG 4 cut(s) 140, 146, 421, 896
BseLI CCNNNNNNNGG 6 cut(s) 94, 307, 308, 971, 1003, 1170
BseMI GCAATG 2 cut(s) 720, 786
BseMII CTCAG 5 cut(s) 274, 384, 438, 663, 942
BseNI ACTGG 2 cut(s) 78, 1116
BseRI GAGGAG 2 cut(s) 126, 846
BseXI GCAGC 6 cut(s) 551, 748, 827, 917, 935, 971
BseYI CCCAGC 1 cut(s) 955
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 3 cut(s) 587, 1037, 1313
BshNI GGYRCC 3 cut(s) 168, 388, 934
BsiHKAI GWGCWC 1 cut(s) 1072
BsiSI CCGG 1 cut(s) 1331
BslFI GGGAC 1 cut(s) 1098
BslI CCNNNNNNNGG 6 cut(s) 94, 307, 308, 971, 1003, 1170
BsmAI GTCTC 6 cut(s) 401, 555, 560, 746, 809, 1339
BsmFI GGGAC 1 cut(s) 1098
BsmI GAATGC 1 cut(s) 1326
BsnI GGCC 3 cut(s) 587, 1037, 1313
Bso31I GGTCTC 4 cut(s) 401, 746, 809, 1339
Bsp1286I GDGCHC 3 cut(s) 63, 367, 1072
Bsp143I GATC 2 cut(s) 175, 187
BspACI CCGC 3 cut(s) 250, 411, 938
BspANI GGCC 3 cut(s) 587, 1037, 1313
BspCNI CTCAG 5 cut(s) 273, 385, 439, 664, 941
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 4 cut(s) 170, 364, 390, 936
BspMAI CTGCAG 2 cut(s) 541, 766
BspT107I GGYRCC 3 cut(s) 168, 388, 934
BspTNI GGTCTC 4 cut(s) 401, 746, 809, 1339
BsrDI GCAATG 2 cut(s) 720, 786
BsrI ACTGG 2 cut(s) 78, 1116
BssECI CCNNGG 6 cut(s) 846, 900, 918, 1052, 1103, 1308
BssMI GATC 2 cut(s) 175, 187
BssT1I CCWWGG 3 cut(s) 918, 1103, 1308
Bst2UI CCWGG 3 cut(s) 848, 902, 1053
Bst4CI ACNGT 9 cut(s) 526, 571, 583, 628, 667, 700, 748, 811, 1074
Bst6I CTCTTC 1 cut(s) 898
BstAPI GCANNNNNTGC 1 cut(s) 460
BstC8I GCNNGC 4 cut(s) 20, 316, 387, 981
BstDEI CTNAG 9 cut(s) 222, 260, 393, 447, 509, 554, 645, 672, 928
BstF5I GGATG 4 cut(s) 140, 146, 421, 896
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 2 cut(s) 178, 190
BstMAI GTCTC 6 cut(s) 401, 555, 560, 746, 809, 1339
BstMBI GATC 2 cut(s) 175, 187
BstMWI GCNNNNNNNGC 7 cut(s) 460, 761, 767, 782, 878, 932, 959
BstNI CCWGG 3 cut(s) 848, 902, 1053
BstNSI RCATGY 2 cut(s) 458, 983
BstSCI CCNGG 3 cut(s) 846, 900, 1051
BstSFI CTRYAG 3 cut(s) 537, 762, 1385
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 6 cut(s) 551, 748, 827, 917, 935, 971
BstV2I GAAGAC 3 cut(s) 189, 339, 656
Bsu36I CCTNAGG 1 cut(s) 393
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 3 cut(s) 587, 1037, 1313
BtsCI GGATG 4 cut(s) 140, 146, 421, 896
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 6 cut(s) 669, 744, 807, 997, 1070, 1123
Cac8I GCNNGC 4 cut(s) 20, 316, 387, 981
CaiI CAGNNNCTG 3 cut(s) 437, 620, 758
Cfr13I GGNCC 2 cut(s) 683, 1036
Csp6I GTAC 2 cut(s) 81, 169
CviQI GTAC 2 cut(s) 81, 169
DdeI CTNAG 9 cut(s) 222, 260, 393, 447, 509, 554, 645, 672, 928
DpnI GATC 2 cut(s) 177, 189
DpnII GATC 2 cut(s) 175, 187
DraI TTTAAA 1 cut(s) 126
DraIII CACNNNGTG 1 cut(s) 971
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 898
EarI CTCTTC 1 cut(s) 898
Eco130I CCWWGG 3 cut(s) 918, 1103, 1308
Eco147I AGGCCT 1 cut(s) 1313
Eco24I GRGCYC 2 cut(s) 63, 367
Eco31I GGTCTC 4 cut(s) 401, 746, 809, 1339
Eco32I GATATC 1 cut(s) 1086
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 1 cut(s) 813
Eco81I CCTNAGG 1 cut(s) 393
EcoRII CCWGG 3 cut(s) 846, 900, 1051
EcoRV GATATC 1 cut(s) 1086
EcoT14I CCWWGG 3 cut(s) 918, 1103, 1308
EcoT22I ATGCAT 1 cut(s) 1348
EcoT38I GRGCYC 2 cut(s) 63, 367
ErhI CCWWGG 3 cut(s) 918, 1103, 1308
FaqI GGGAC 1 cut(s) 1098
FauNDI CATATG 2 cut(s) 279, 1348
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 7 cut(s) 251, 540, 762, 816, 906, 924, 960
FokI GGATG 4 cut(s) 127, 133, 408, 883
FriOI GRGCYC 2 cut(s) 63, 367
Fsp4HI GCNGC 7 cut(s) 251, 540, 762, 816, 906, 924, 960
FspBI CTAG 4 cut(s) 359, 600, 606, 639
GluI GCNGC 7 cut(s) 251, 540, 762, 816, 906, 924, 960
GsaI CCCAGC 1 cut(s) 959
HaeIII GGCC 3 cut(s) 587, 1037, 1313
HapII CCGG 1 cut(s) 1331
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 5 cut(s) 35, 377, 842, 1099, 1181
HpaII CCGG 1 cut(s) 1331
Hpy188I TCNGA 8 cut(s) 40, 382, 448, 706, 832, 931, 1090, 1173
Hpy188III TCNNGA 3 cut(s) 179, 479, 1077
Hpy99I CGWCG 1 cut(s) 1361
HpyAV CCTTC 4 cut(s) 278, 731, 837, 1018
HpyCH4III ACNGT 9 cut(s) 526, 571, 583, 628, 667, 700, 748, 811, 1074
HpyCH4V TGCA 7 cut(s) 22, 314, 539, 764, 776, 815, 1346
HpyF10VI GCNNNNNNNGC 7 cut(s) 460, 761, 767, 782, 878, 932, 959
HpyF3I CTNAG 9 cut(s) 222, 260, 393, 447, 509, 554, 645, 672, 928
KpnI GGTACC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 175, 187
LmnI GCTCC 4 cut(s) 362, 859, 886, 967
Lsp1109I GCAGC 6 cut(s) 551, 748, 827, 917, 935, 971
LweI GCATC 4 cut(s) 149, 337, 472, 763
MaeI CTAG 4 cut(s) 359, 600, 606, 639
MaeIII GTNAC 6 cut(s) 132, 263, 526, 571, 667, 992
MalI GATC 2 cut(s) 177, 189
MboI GATC 2 cut(s) 175, 187
MhlI GDGCHC 3 cut(s) 63, 367, 1072
MlsI TGGCCA 1 cut(s) 587
MluI ACGCGT 1 cut(s) 16
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 3 cut(s) 29, 1108, 1190
Mox20I TGGCCA 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 1348
MscI TGGCCA 1 cut(s) 587
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 587
MspI CCGG 1 cut(s) 1331
MspR9I CCNGG 3 cut(s) 848, 902, 1053
Mva1269I GAATGC 1 cut(s) 1326
MvaI CCWGG 3 cut(s) 848, 902, 1053
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 7 cut(s) 460, 761, 767, 782, 878, 932, 959
NdeI CATATG 2 cut(s) 279, 1348
NdeII GATC 2 cut(s) 175, 187
NlaIV GGNNCC 4 cut(s) 170, 364, 390, 936
NmuCI GTSAC 4 cut(s) 132, 263, 667, 992
NsiI ATGCAT 1 cut(s) 1348
NspI RCATGY 2 cut(s) 458, 983
OliI CACNNNNGTG 1 cut(s) 224
PaeI GCATGC 1 cut(s) 983
PceI AGGCCT 1 cut(s) 1313
PctI GAATGC 1 cut(s) 1326
PfeI GAWTC 2 cut(s) 377, 842
PflMI CCANNNNNTGG 1 cut(s) 971
PkrI GCNGC 7 cut(s) 252, 541, 763, 817, 907, 925, 961
PleI GAGTC 3 cut(s) 29, 1107, 1189
PpsI GAGTC 3 cut(s) 29, 1107, 1189
Psp6I CCWGG 3 cut(s) 846, 900, 1051
PspFI CCCAGC 1 cut(s) 955
PspGI CCWGG 3 cut(s) 846, 900, 1051
PspN4I GGNNCC 4 cut(s) 170, 364, 390, 936
PspPI GGNCC 2 cut(s) 683, 1036
PstI CTGCAG 2 cut(s) 541, 766
PstNI CAGNNNCTG 3 cut(s) 437, 620, 758
RsaI GTAC 2 cut(s) 82, 170
RsaNI GTAC 2 cut(s) 81, 169
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 7 cut(s) 251, 540, 762, 816, 906, 924, 960
Sau3AI GATC 2 cut(s) 175, 187
Sau96I GGNCC 2 cut(s) 683, 1036
SchI GAGTC 3 cut(s) 29, 1108, 1190
ScrFI CCNGG 3 cut(s) 848, 902, 1053
SduI GDGCHC 3 cut(s) 63, 367, 1072
SfaNI GCATC 4 cut(s) 149, 337, 472, 763
SfcI CTRYAG 3 cut(s) 537, 762, 1385
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 224
SphI GCATGC 1 cut(s) 983
SseBI AGGCCT 1 cut(s) 1313
SsiI CCGC 3 cut(s) 250, 411, 938
SspMI CTAG 4 cut(s) 359, 600, 606, 639
StuI AGGCCT 1 cut(s) 1313
StyD4I CCNGG 3 cut(s) 846, 900, 1051
StyI CCWWGG 3 cut(s) 918, 1103, 1308
TaaI ACNGT 9 cut(s) 526, 571, 583, 628, 667, 700, 748, 811, 1074
TaqI TCGA 3 cut(s) 12, 109, 1359
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 2 cut(s) 377, 842
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 6 cut(s) 676, 751, 814, 997, 1077, 1123
TseFI GTSAC 4 cut(s) 132, 263, 667, 992
TseI GCWGC 6 cut(s) 539, 761, 815, 905, 923, 959
Tsp45I GTSAC 4 cut(s) 132, 263, 667, 992
TspDTI ATGAA 6 cut(s) 335, 345, 390, 855, 885, 1365
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 6 cut(s) 676, 751, 814, 997, 1077, 1123
Van91I CCANNNNNTGG 1 cut(s) 971
VpaK11BI GGWCC 1 cut(s) 683
XceI RCATGY 2 cut(s) 458, 983
XspI CTAG 4 cut(s) 359, 600, 606, 639
Zsp2I ATGCAT 1 cut(s) 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.