Rorug05G0377000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016710
Physical Location & Seq
Reverse (-)
51008587 .. 51009018
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0377000.1

Sequence Viewer

Length: 432 bp
ATGAAACAGGTACACAAGCAATCAAGCGTGAATCACAGGAGGGACGAAGAGATCCCAACCTCCCTAGCCTCCTCCTACTCCACTAAAACCTTTAAGAAACCCAAATCTCTCCCCAGATCCATCAACTTCATCTTCAAAGAGCAACACCTCCTCTTCATCCTCGTTGGCATTCTCGTCGGCTCCACCTTCTTCATCCTCCAGCCCACTCTCTTCTGCCTCTCCCTTCCAAGCCCAATCCCTACATCCCTAGATCCTTCTCCTCCGTTCACGACCGAATCAACACTGCCTCCTTCTCTACCGACCTCCCCCACAACGCCGGCAGGGTCCCCGCCAACCTCGGCAAGCATAGGCTCAGGATCTTCGTCACCTGTGGCGCCGGCTTCATTGGGTCTCACCTCGTCGATAAGTTACTCTCTAGAGAGAACGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.26

Weight (kDa)

9.52

Isoelectric Point (pI)

78.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016710)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46750
fragaria_vesca FvH4_3g36910
malus_domestica MD11G1095400.v1.1
prunus_persica Prupe.6G070900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066301
rosa_laevigata RLG00000035849
rosa_multiflora Rmu_sc0006887.1_g000013
rosa_roxburghii Rroxscaffold_1G00014820
rosa_rugosa Rorug05G0377000
rosa_samantha Rh5AG435600 Rh5BG451800 Rh5CG474100 Rh5DG466700
rosa_wichuraiana Rw5G040790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AciI CCGC 1 cut(s) 329
AclWI GGATC 4 cut(s) 46, 111, 245, 364
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 4 cut(s) 46, 111, 245, 364
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 357, 385
AvaII GGWCC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 373
BccI CCATC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 3 cut(s) 65, 248, 416
BfoI RGCGCY 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 4 cut(s) 181, 325, 326, 375
BpmI CTGGAG 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 352
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse118I RCCGGY 2 cut(s) 316, 376
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 3 cut(s) 156, 192, 242
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 3 cut(s) 61, 140, 249
Bsh1285I CGRYCG 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 317, 377
BslFI GGGAC 2 cut(s) 56, 310
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 56, 310
BsmI GAATGC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 395
Bsp143I GATC 4 cut(s) 51, 116, 250, 356
BspACI CCGC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 365
BspLI GGNNCC 4 cut(s) 181, 325, 326, 375
BspPI GGATC 4 cut(s) 46, 111, 245, 364
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 395
BsrFI RCCGGY 2 cut(s) 316, 376
BssAI RCCGGY 2 cut(s) 316, 376
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 4 cut(s) 51, 116, 250, 356
BssNI GRCGYC 1 cut(s) 374
Bst6I CTCTTC 3 cut(s) 42, 158, 215
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 318, 343, 378
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 3 cut(s) 156, 192, 242
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 4 cut(s) 54, 119, 253, 359
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 4 cut(s) 51, 116, 250, 356
BstMCI CGRYCG 1 cut(s) 273
BstX2I RGATCY 4 cut(s) 51, 116, 250, 356
BstYI RGATCY 4 cut(s) 51, 116, 250, 356
BtsCI GGATG 3 cut(s) 156, 192, 242
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 3 cut(s) 318, 343, 378
CfoI GCGC 1 cut(s) 376
Cfr10I RCCGGY 2 cut(s) 316, 376
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 11
CviJI RGCY 6 cut(s) 68, 180, 202, 231, 351, 380
CviKI_1 RGCY 6 cut(s) 68, 180, 202, 231, 351, 380
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 352
DinI GGCGCC 1 cut(s) 375
DpnI GATC 4 cut(s) 53, 118, 252, 358
DpnII GATC 4 cut(s) 51, 116, 250, 356
Eam1104I CTCTTC 3 cut(s) 42, 158, 215
EarI CTCTTC 3 cut(s) 42, 158, 215
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 375
EheI GGCGCC 1 cut(s) 375
FaiI YATR 1 cut(s) 347
FaqI GGGAC 2 cut(s) 56, 310
FauI CCCGC 1 cut(s) 336
FokI GGATG 3 cut(s) 143, 179, 229
FspBI CTAG 3 cut(s) 65, 248, 416
GlaI GCGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 377
HapII CCGG 2 cut(s) 317, 377
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 374
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 2 cut(s) 31, 275
HpaII CCGG 2 cut(s) 317, 377
HphI GGTGA 2 cut(s) 357, 385
Hpy166II GTNNAC 2 cut(s) 13, 267
Hpy188III TCNNGA 3 cut(s) 268, 354, 416
Hpy8I GTNNAC 2 cut(s) 13, 267
Hpy99I CGWCG 2 cut(s) 179, 403
HpyAV CCTTC 4 cut(s) 196, 233, 264, 300
HpyF3I CTNAG 1 cut(s) 352
Hsp92I GRCGYC 1 cut(s) 374
HspAI GCGC 1 cut(s) 374
KasI GGCGCC 1 cut(s) 373
KflI GGGWCCC 1 cut(s) 324
KroI GCCGGC 2 cut(s) 316, 376
KroNI GCCGGC 2 cut(s) 318, 378
Kzo9I GATC 4 cut(s) 51, 116, 250, 356
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 8 cut(s) 22, 127, 212, 306, 330, 339, 381, 390
MaeI CTAG 3 cut(s) 65, 248, 416
MaeIII GTNAC 2 cut(s) 363, 407
MalI GATC 4 cut(s) 53, 118, 252, 358
MboI GATC 4 cut(s) 51, 116, 250, 356
MboII GAAGA 6 cut(s) 59, 124, 145, 181, 202, 351
MflI RGATCY 4 cut(s) 51, 116, 250, 356
Mly113I GGCGCC 1 cut(s) 374
MroNI GCCGGC 2 cut(s) 316, 376
MseI TTAA 1 cut(s) 93
MspI CCGG 2 cut(s) 317, 377
Mva1269I GAATGC 1 cut(s) 168
NaeI GCCGGC 2 cut(s) 318, 378
NarI GGCGCC 1 cut(s) 374
NdeII GATC 4 cut(s) 51, 116, 250, 356
NgoMIV GCCGGC 2 cut(s) 316, 376
NlaIV GGNNCC 4 cut(s) 181, 325, 326, 375
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 363
PctI GAATGC 1 cut(s) 168
PdiI GCCGGC 2 cut(s) 318, 378
PfeI GAWTC 2 cut(s) 31, 275
PluTI GGCGCC 1 cut(s) 377
PpuMI RGGWCCY 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 324
PspN4I GGNNCC 4 cut(s) 181, 325, 326, 375
PspPI GGNCC 1 cut(s) 324
PspPPI RGGWCCY 1 cut(s) 324
PsuI RGATCY 4 cut(s) 51, 116, 250, 356
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 4 cut(s) 51, 116, 250, 356
Sau96I GGNCC 1 cut(s) 324
SetI ASST 9 cut(s) 12, 62, 92, 150, 188, 305, 338, 370, 398
SfoI GGCGCC 1 cut(s) 375
SinI GGWCC 1 cut(s) 324
SsiI CCGC 1 cut(s) 329
SspDI GGCGCC 1 cut(s) 373
SspMI CTAG 3 cut(s) 65, 248, 416
TaqI TCGA 1 cut(s) 401
TaqII GACCGA 1 cut(s) 287
TfiI GAWTC 2 cut(s) 31, 275
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 5 cut(s) 17, 118, 145, 181, 372
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 324
XbaI TCTAGA 1 cut(s) 415
XspI CTAG 3 cut(s) 65, 248, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.