Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016142

Physical Location & Seq

Genomic Coordinates Reverse (-)

18400257 .. 18402962

Gene Structure 2706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49640.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATTATCAGAACAAGCTTGTTCTTGCTCCCATGGTTCGTGTGGGAACGCTCTCTTTCAGGATGTTGGCGGCGGAATACGGCGCCGATATCACATACGGTGAAGAGATTATTGATCATAAGCTTGTTAAATGCGAACGCCGACTCAATGTTGCTTCTGGGACATCTGAGTTTGTGGAGAAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTGTGTAATGACGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCATTCTCTATCCAAGGTGGAATGGGTGCTGCTTTGTTAAGTAAACCCGAGCTAATTCATGATATTTTGGCAACACTTAAGAGGAACTTAGACGTACCGGTTACTTGCAAGATTCGTCTATTAAAATCACCAGCAGATACTGTTGAATTGGCTAGGAGAATCGAGAAACTTGGTGTACCAGCTCTTGCTGTACATGGGAGGAAAATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGCATTATCCATTCCCGTCATTGCAAATGGCGATGTTTTAGAATATGATGATTTTTCTCGCATTAAAACCGCAACAGGCGCTGCATCAGTTATGGTTGCAAGAGGAGCTATGTGGAATGCTTCAATTTTCTCTCCAAAAGGAAAATCACACTGGGAAGATGTGAAAAAGAAATACCTTAGAAAGAGCATCTTGTGGAATAACGATGTTAAGAGCACGAAATACACGATAAAGGAGATGATAGCGCATCATTCTTGTCTTGAACTACCGGAAGGGAAGTCTATCAACAAAGCAGACACTTTAGAAGATTTAGCGCGGCTTTACGATTTAGAAGATTACTTTTGGACAGTGAAGAACATTGGTCCACTGACACATAACTTAAACCATGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0002943 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004857 GO:0004860 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006469 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010467 GO:0010563 GO:0010605 GO:0010941 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0034470 GO:0034641 GO:0034660 GO:0042325 GO:0042326 GO:0043086 GO:0043170 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0055114 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

329

Amino Acids

36.47

Weight (kDa)

7.08

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	27 - 218	2.6e-50	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49640 AT3G49640
malus_domestica	MD06G1013700.v1.1
prunus_persica	Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0214881
rosa_laevigata	RLG00000002712
rosa_multiflora	Rmu_ssc0000134.1_g000003
rosa_roxburghii	Rroxscaffold_3G00244940
rosa_rugosa	Rorug07G0147900 Rorug07G0148000.1
rosa_samantha	Rh7BG275800 Rh7DG288400
rosa_wichuraiana	Rw7G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	1 cut(s)	910
AciI	CCGC	4 cut(s)	71, 74, 666, 910
AclWI	GGATC	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	432, 513, 528
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	209
AgeI	ACCGGT	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	482, 720, 857
AluBI	AGCT	5 cut(s)	19, 124, 388, 518, 704
AluI	AGCT	5 cut(s)	19, 124, 388, 518, 704
Alw21I	GWGCWC	1 cut(s)	812
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	2 cut(s)	476, 677
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	3 cut(s)	365, 596, 677
AseI	ATTAAT	1 cut(s)	318
AsiGI	ACCGGT	1 cut(s)	433
AspLEI	GCGC	4 cut(s)	86, 677, 841, 910
AspS9I	GGNCC	1 cut(s)	956
AsuHPI	GGTGA	2 cut(s)	113, 456
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	956
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	3 cut(s)	352, 608, 664
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	1 cut(s)	489
BfoI	RGCGCY	2 cut(s)	87, 678
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	5 cut(s)	72, 366, 597, 678, 911
BlsI	GCNGC	5 cut(s)	73, 367, 598, 679, 912
Bme18I	GGWCC	1 cut(s)	956
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	956
BmiI	GGNNCC	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	4 cut(s)	247, 689, 792, 850
BmuI	ACTGGG	1 cut(s)	757
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	33, 333, 349
BsaWI	WCCGGW	2 cut(s)	433, 862
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	752
Bse3DI	GCAATG	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	33, 333, 349
BseGI	GGATG	2 cut(s)	69, 580
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	159, 273
BseNI	ACTGG	1 cut(s)	752
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	3 cut(s)	352, 608, 664
Bsh1236I	CGCG	1 cut(s)	910
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	83
BshTI	ACCGGT	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	812
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	434, 863
BslFI	GGGAC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	2 cut(s)	338, 718
BsnI	GGCC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	271, 812
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	115, 559
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	4 cut(s)	71, 74, 666, 910
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	2 cut(s)	160, 274
BspFNI	CGCG	1 cut(s)	910
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	752
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	33, 333, 349
BssMI	GATC	2 cut(s)	115, 559
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	3 cut(s)	33, 333, 349
Bst4CI	ACNGT	3 cut(s)	101, 478, 943
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	526
BstDEI	CTNAG	4 cut(s)	168, 282, 424, 773
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	69, 580
BstFNI	CGCG	1 cut(s)	910
BstH2I	RGCGCY	2 cut(s)	87, 678
BstHHI	GCGC	4 cut(s)	86, 677, 841, 910
BstKTI	GATC	2 cut(s)	118, 562
BstMBI	GATC	2 cut(s)	115, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 275, 674, 701
BstNSI	RCATGY	1 cut(s)	213
BstUI	CGCG	1 cut(s)	910
BstV1I	GCAGC	3 cut(s)	352, 608, 664
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	553
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	2 cut(s)	69, 580
BtsIMutI	CAGTG	3 cut(s)	745, 948, 959
CaiI	CAGNNNCTG	2 cut(s)	476, 677
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	4 cut(s)	86, 677, 841, 910
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	956
Csp6I	GTAC	3 cut(s)	431, 512, 527
CspAI	ACCGGT	1 cut(s)	433
CviAII	CATG	5 cut(s)	34, 210, 395, 530, 980
CviQI	GTAC	3 cut(s)	431, 512, 527
DdeI	CTNAG	4 cut(s)	168, 282, 424, 773
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	2 cut(s)	117, 561
DpnII	GATC	2 cut(s)	115, 559
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	3 cut(s)	33, 333, 349
Eco24I	GRGCYC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	956
Eco88I	CYCGRG	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	3 cut(s)	33, 333, 349
EcoT38I	GRGCYC	1 cut(s)	271
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	3 cut(s)	33, 333, 349
FaeI	CATG	5 cut(s)	37, 213, 398, 533, 983
FalI	AAGNNNNNCTT	4 cut(s)	407, 439, 770, 802
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	5 cut(s)	33, 209, 394, 529, 979
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	72, 366, 597, 678, 911
FokI	GGATG	2 cut(s)	76, 587
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	5 cut(s)	72, 366, 597, 678, 911
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	4 cut(s)	85, 676, 840, 909
GluI	GCNGC	5 cut(s)	72, 366, 597, 678, 911
HaeII	RGCGCY	2 cut(s)	87, 678
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	434, 863
HhaI	GCGC	4 cut(s)	86, 677, 841, 910
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	37, 213, 398, 533, 983
Hin6I	GCGC	4 cut(s)	84, 675, 839, 908
HinP1I	GCGC	4 cut(s)	84, 675, 839, 908
HindIII	AAGCTT	2 cut(s)	17, 122
HinfI	GANTC	3 cut(s)	144, 448, 495
HpaII	CCGG	2 cut(s)	434, 863
HphI	GGTGA	2 cut(s)	113, 456
Hpy166II	GTNNAC	3 cut(s)	380, 512, 959
Hpy188I	TCNGA	5 cut(s)	12, 169, 243, 256, 283
Hpy188III	TCNNGA	4 cut(s)	61, 395, 499, 854
Hpy8I	GTNNAC	3 cut(s)	380, 512, 959
HpyAV	CCTTC	1 cut(s)	860
HpyCH4III	ACNGT	3 cut(s)	101, 478, 943
HpyCH4IV	ACGT	2 cut(s)	300, 429
HpyCH4V	TGCA	7 cut(s)	305, 444, 545, 584, 620, 680, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 275, 674, 701
HpyF3I	CTNAG	4 cut(s)	168, 282, 424, 773
HpySE526I	ACGT	2 cut(s)	300, 429
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	37, 213, 398, 533, 983
HspAI	GCGC	4 cut(s)	84, 675, 839, 908
KasI	GGCGCC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	115, 559
LmnI	GCTCC	2 cut(s)	34, 701
Lsp1109I	GCAGC	3 cut(s)	352, 608, 664
LweI	GCATC	4 cut(s)	247, 689, 792, 850
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	300, 429
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	2 cut(s)	117, 561
MboI	GATC	2 cut(s)	115, 559
MboII	GAAGA	6 cut(s)	116, 230, 764, 911, 938, 958
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	271, 812
MluCI	AATT	4 cut(s)	390, 482, 540, 720
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	411, 528, 692
MseI	TTAA	8 cut(s)	129, 318, 374, 414, 458, 660, 804, 974
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	2 cut(s)	434, 863
Mva1269I	GAATGC	2 cut(s)	338, 718
MvnI	CGCG	1 cut(s)	910
MwoI	GCNNNNNNNGC	4 cut(s)	266, 275, 674, 701
NarI	GGCGCC	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	115, 559
NlaIII	CATG	5 cut(s)	37, 213, 398, 533, 983
NlaIV	GGNNCC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	213
PagI	TCATGA	1 cut(s)	394
PciI	ACATGT	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	818
PctI	GAATGC	2 cut(s)	338, 718
PfeI	GAWTC	2 cut(s)	448, 495
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	5 cut(s)	73, 367, 598, 679, 912
PleI	GAGTC	1 cut(s)	138
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	138
PscI	ACATGT	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	956
PstNI	CAGNNNCTG	2 cut(s)	476, 677
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	3 cut(s)	432, 513, 528
RsaNI	GTAC	3 cut(s)	431, 512, 527
SaqAI	TTAA	8 cut(s)	129, 318, 374, 414, 458, 660, 804, 974
SatI	GCNGC	5 cut(s)	72, 366, 597, 678, 911
Sau3AI	GATC	2 cut(s)	115, 559
Sau96I	GGNCC	1 cut(s)	956
SchI	GAGTC	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	271, 812
SetI	ASST	9 cut(s)	21, 126, 303, 355, 390, 432, 520, 706, 774
SfaNI	GCATC	4 cut(s)	247, 689, 792, 850
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	956
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	390, 482, 540, 720
SsiI	CCGC	4 cut(s)	71, 74, 666, 910
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	489
StyI	CCWWGG	3 cut(s)	33, 333, 349
TaaI	ACNGT	3 cut(s)	101, 478, 943
TaiI	ACGT	2 cut(s)	303, 432
TaqI	TCGA	1 cut(s)	498
TasI	AATT	4 cut(s)	390, 482, 540, 720
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	2 cut(s)	74, 913
TfiI	GAWTC	2 cut(s)	448, 495
Tru1I	TTAA	8 cut(s)	129, 318, 374, 414, 458, 660, 804, 974
Tru9I	TTAA	8 cut(s)	129, 318, 374, 414, 458, 660, 804, 974
TscAI	CASTG	3 cut(s)	752, 948, 966
TseI	GCWGC	3 cut(s)	365, 596, 677
TspDTI	ATGAA	2 cut(s)	231, 383
TspRI	CASTG	3 cut(s)	752, 948, 966
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	956
VspI	ATTAAT	1 cut(s)	318
XceI	RCATGY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.