Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016142

Physical Location & Seq

Genomic Coordinates Forward (+)

1725560 .. 1739393

Gene Structure 13834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1013700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGTACCGCAACAAACTTGTCCTCGCTCCCATGGTTCGCGTCGGGACTTTGCCGTTTCGATTACTAGCTGCTGAATATGGAGCTGATATAACCTACGGTGAAGAAATTATCGACCATAAACTTGTCAAATGCGACCGCAGATTCAATGAGAAATTAGGATCCGTTGATTTTGTGGAGAAAGGTACTGGAAGTGTTGTTTTCAGGACGTGCGATGAGGAAAAGAATCGAGTGGTGTTTCAGATTGGTACTTCCAACGCCGTAAGGGCTCTCAAAGCTGCTGAGATCGTATGTAAAGATGTCGCAGCAGTGGATATAAACATGGGTTGTCCAAAGTCATTTTCTGTGAGTGGAGGAATGGGTGCTGCACTATTGACCAAACCAGATCTTATTCATGATATTTTGACTACTTTATGGCGGAACCTAAGTATACCGGTAACTTGTAAGATTCGACTACTAAAATCATCTCAGGATACTGTTGAATTGGCTAGGAGAATTGAAAAAACTGGAGTTACTGCTCTTGCTGTCCATGGAAGAAAAGTTGAGGATAGGCCGCGGGATCCAGCTAAGTGGAGTGAAATTGCTGATGTTGTAGCATCCTTATCCATTCCAGTTATAGCAAATGGCGATGTTTTTGAGTATGAAGATTTTCAGCGTATCAAAGTTGCTACAGGTACCTCATCTGTGATGGTTGCAAGAGGAGCACTTTGGAATGCTTCAATTTTCTGTCCAAAAGGTAAATTACCATGGGAAGACGTGAAGAGGGAATATGTTAGGAAGAGCATCTTGTGGGATAACGACATTAAAAGCACAAAGCACACACTGAGGGAAATGATAACGCATCATTCGTCCCTTGAACTTGCAGAAGGAAAGGCTGTGATTAAATCAGAATCCTTGATAGATCTTGCGCGGCTTTATGGAGCGGAGAATTATGAGTTTGTTCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0002943 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004857 GO:0004860 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006469 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010467 GO:0010563 GO:0010605 GO:0010941 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0034470 GO:0034641 GO:0034660 GO:0042325 GO:0042326 GO:0043086 GO:0043170 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0055114 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

317

Amino Acids

35.21

Weight (kDa)

8.42

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	9 - 257	6.4e-56	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49640 AT3G49640
malus_domestica	MD06G1013700.v1.1
prunus_persica	Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0214881
rosa_laevigata	RLG00000002712
rosa_multiflora	Rmu_ssc0000134.1_g000003
rosa_roxburghii	Rroxscaffold_3G00244940
rosa_rugosa	Rorug07G0147900 Rorug07G0148000.1
rosa_samantha	Rh7BG275800 Rh7DG288400
rosa_wichuraiana	Rw7G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	674
AccBSI	CCGCTC	1 cut(s)	923
AccI	GTMKAC	1 cut(s)	430
AccII	CGCG	3 cut(s)	42, 556, 910
AciI	CCGC	7 cut(s)	10, 139, 418, 554, 556, 910, 923
AclWI	GGATC	4 cut(s)	156, 169, 554, 567
AfaI	GTAC	4 cut(s)	8, 187, 250, 676
AgeI	ACCGGT	1 cut(s)	433
AgsI	TTSAA	5 cut(s)	148, 482, 500, 720, 857
AjiI	CACGTC	2 cut(s)	210, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	4 cut(s)	71, 86, 278, 566
AluI	AGCT	4 cut(s)	71, 86, 278, 566
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	4 cut(s)	156, 169, 554, 567
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	4 cut(s)	71, 278, 305, 365
AsiGI	ACCGGT	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	648
Asp718I	GGTACC	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	910
AsuHPI	GGTGA	1 cut(s)	113
BamHI	GGATCC	2 cut(s)	161, 559
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	4 cut(s)	58, 265, 317, 352
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	2 cut(s)	40, 245
BciVI	GTATCC	1 cut(s)	466
BfaI	CTAG	2 cut(s)	68, 489
BfmI	CTRYAG	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	266
BglII	AGATCT	2 cut(s)	385, 901
BisI	GCNGC	6 cut(s)	72, 279, 306, 366, 554, 911
BlsI	GCNGC	6 cut(s)	73, 280, 307, 367, 555, 912
BmgBI	CACGTC	2 cut(s)	210, 757
BmiI	GGNNCC	4 cut(s)	163, 422, 561, 676
BmsI	GCATC	3 cut(s)	605, 792, 850
BpiI	GAAGAC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	528
BsaJI	CCNNGG	4 cut(s)	33, 529, 554, 746
BsaWI	WCCGGW	1 cut(s)	433
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	3 cut(s)	193, 511, 611
BseDI	CCNNGG	4 cut(s)	33, 529, 554, 746
BseGI	GGATG	1 cut(s)	596
BseMII	CTCAG	3 cut(s)	273, 482, 815
BseNI	ACTGG	3 cut(s)	193, 511, 611
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	4 cut(s)	58, 265, 317, 352
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	3 cut(s)	42, 556, 910
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	674
BshTI	ACCGGT	1 cut(s)	433
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	2 cut(s)	61, 835
BsmFI	GGGAC	2 cut(s)	61, 835
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	1 cut(s)	553
Bsp1286I	GDGCHC	2 cut(s)	271, 706
Bsp143I	GATC	5 cut(s)	161, 285, 385, 559, 901
Bsp19I	CCATGG	3 cut(s)	33, 529, 746
BspACI	CCGC	7 cut(s)	10, 139, 418, 554, 556, 910, 923
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	3 cut(s)	274, 481, 816
BspFNI	CGCG	3 cut(s)	42, 556, 910
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	163, 422, 561, 676
BspPI	GGATC	4 cut(s)	156, 169, 554, 567
BspQI	GCTCTTC	1 cut(s)	773
BspT107I	GGYRCC	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	923
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	3 cut(s)	193, 511, 611
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	4 cut(s)	33, 529, 554, 746
BssMI	GATC	5 cut(s)	161, 285, 385, 559, 901
BssNAI	GTATAC	1 cut(s)	431
BssT1I	CCWWGG	3 cut(s)	33, 529, 746
Bst1107I	GTATAC	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	101, 478
Bst6I	CTCTTC	2 cut(s)	755, 773
BstDEI	CTNAG	5 cut(s)	282, 425, 468, 567, 824
BstDSI	CCRYGG	4 cut(s)	33, 529, 554, 746
BstF5I	GGATG	1 cut(s)	596
BstFNI	CGCG	3 cut(s)	42, 556, 910
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	5 cut(s)	164, 288, 388, 562, 904
BstMBI	GATC	5 cut(s)	161, 285, 385, 559, 901
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 275, 701
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	3 cut(s)	42, 556, 910
BstV1I	GCAGC	4 cut(s)	58, 265, 317, 352
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	4 cut(s)	161, 385, 559, 901
BstXI	CCANNNNNNTGG	1 cut(s)	570
BstYI	RGATCY	4 cut(s)	161, 385, 559, 901
BstZ17I	GTATAC	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	553
BtgI	CCRYGG	4 cut(s)	33, 529, 554, 746
BtgZI	GCGATG	2 cut(s)	228, 642
BtrI	CACGTC	2 cut(s)	210, 757
BtsCI	GGATG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 821
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	1 cut(s)	910
Cfr10I	RCCGGY	1 cut(s)	433
Cfr42I	CCGCGG	1 cut(s)	557
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	4 cut(s)	7, 186, 249, 675
CspAI	ACCGGT	1 cut(s)	433
CviAII	CATG	5 cut(s)	34, 322, 395, 530, 747
CviJI	RGCY	9 cut(s)	71, 86, 269, 278, 488, 553, 566, 875, 913
CviKI_1	RGCY	9 cut(s)	71, 86, 269, 278, 488, 553, 566, 875, 913
CviQI	GTAC	4 cut(s)	7, 186, 249, 675
DdeI	CTNAG	5 cut(s)	282, 425, 468, 567, 824
DpnI	GATC	5 cut(s)	163, 287, 387, 561, 903
DpnII	GATC	5 cut(s)	161, 285, 385, 559, 901
Eam1104I	CTCTTC	2 cut(s)	755, 773
EarI	CTCTTC	2 cut(s)	755, 773
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	3 cut(s)	33, 529, 746
Eco24I	GRGCYC	1 cut(s)	271
EcoT14I	CCWWGG	3 cut(s)	33, 529, 746
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	33, 529, 746
FaeI	CATG	5 cut(s)	37, 325, 398, 533, 750
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	2 cut(s)	61, 835
FatI	CATG	5 cut(s)	33, 321, 394, 529, 746
FauI	CCCGC	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	6 cut(s)	72, 279, 306, 366, 554, 911
FokI	GGATG	1 cut(s)	583
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	6 cut(s)	72, 279, 306, 366, 554, 911
FspBI	CTAG	2 cut(s)	68, 489
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	6 cut(s)	72, 279, 306, 366, 554, 911
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	1 cut(s)	434
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	910
Hin1II	CATG	5 cut(s)	37, 325, 398, 533, 750
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HinfI	GANTC	4 cut(s)	144, 226, 448, 890
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	3 cut(s)	243, 889, 945
Hpy188III	TCNNGA	4 cut(s)	46, 205, 395, 470
Hpy8I	GTNNAC	1 cut(s)	431
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	860
HpyCH4III	ACNGT	2 cut(s)	101, 478
HpyCH4IV	ACGT	2 cut(s)	209, 756
HpyCH4V	TGCA	3 cut(s)	368, 695, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 275, 701
HpyF3I	CTNAG	5 cut(s)	282, 425, 468, 567, 824
HpySE526I	ACGT	2 cut(s)	209, 756
Hsp92II	CATG	5 cut(s)	37, 325, 398, 533, 750
HspAI	GCGC	1 cut(s)	908
KpnI	GGTACC	1 cut(s)	678
KspI	CCGCGG	1 cut(s)	557
Kzo9I	GATC	5 cut(s)	161, 285, 385, 559, 901
LguI	GCTCTTC	1 cut(s)	773
LmnI	GCTCC	4 cut(s)	34, 83, 701, 920
LpnPI	CCDG	9 cut(s)	174, 190, 396, 447, 455, 492, 576, 624, 657
Lsp1109I	GCAGC	4 cut(s)	58, 265, 317, 352
LweI	GCATC	3 cut(s)	605, 792, 850
MaeI	CTAG	2 cut(s)	68, 489
MaeII	ACGT	2 cut(s)	209, 756
MaeIII	GTNAC	2 cut(s)	436, 511
MalI	GATC	5 cut(s)	163, 287, 387, 561, 903
MbiI	CCGCTC	1 cut(s)	923
MboI	GATC	5 cut(s)	161, 285, 385, 559, 901
MboII	GAAGA	6 cut(s)	116, 546, 656, 764, 772, 790
MflI	RGATCY	4 cut(s)	161, 385, 559, 901
MhlI	GDGCHC	2 cut(s)	271, 706
MluCI	AATT	8 cut(s)	108, 155, 482, 495, 579, 720, 740, 928
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	8 cut(s)	35, 211, 347, 538, 688, 692, 756, 819
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	2 cut(s)	804, 882
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	718
MvnI	CGCG	3 cut(s)	42, 556, 910
MwoI	GCNNNNNNNGC	3 cut(s)	266, 275, 701
NcoI	CCATGG	3 cut(s)	33, 529, 746
NdeII	GATC	5 cut(s)	161, 285, 385, 559, 901
NlaIII	CATG	5 cut(s)	37, 325, 398, 533, 750
NlaIV	GGNNCC	4 cut(s)	163, 422, 561, 676
PagI	TCATGA	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	773
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	4 cut(s)	144, 226, 448, 890
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	73, 280, 307, 367, 555, 912
PspN4I	GGNNCC	4 cut(s)	163, 422, 561, 676
PsuI	RGATCY	4 cut(s)	161, 385, 559, 901
RsaI	GTAC	4 cut(s)	8, 187, 250, 676
RsaNI	GTAC	4 cut(s)	7, 186, 249, 675
SacII	CCGCGG	1 cut(s)	557
SapI	GCTCTTC	1 cut(s)	773
SaqAI	TTAA	2 cut(s)	804, 882
SatI	GCNGC	6 cut(s)	72, 279, 306, 366, 554, 911
Sau3AI	GATC	5 cut(s)	161, 285, 385, 559, 901
SduI	GDGCHC	2 cut(s)	271, 706
SfaNI	GCATC	3 cut(s)	605, 792, 850
SfcI	CTRYAG	1 cut(s)	669
Sfr303I	CCGCGG	1 cut(s)	557
SgrBI	CCGCGG	1 cut(s)	557
Sse9I	AATT	8 cut(s)	108, 155, 482, 495, 579, 720, 740, 928
SsiI	CCGC	7 cut(s)	10, 139, 418, 554, 556, 910, 923
SspMI	CTAG	2 cut(s)	68, 489
StyI	CCWWGG	3 cut(s)	33, 529, 746
TaaI	ACNGT	2 cut(s)	101, 478
TaiI	ACGT	2 cut(s)	212, 759
TaqI	TCGA	4 cut(s)	61, 114, 229, 451
TasI	AATT	8 cut(s)	108, 155, 482, 495, 579, 720, 740, 928
TauI	GCSGC	2 cut(s)	556, 913
TfiI	GAWTC	4 cut(s)	144, 226, 448, 890
Tru1I	TTAA	2 cut(s)	804, 882
Tru9I	TTAA	2 cut(s)	804, 882
TscAI	CASTG	2 cut(s)	315, 828
TseI	GCWGC	4 cut(s)	71, 278, 305, 365
TspDTI	ATGAA	2 cut(s)	383, 657
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	315, 828
XmiI	GTMKAC	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	68, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.