Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016142

Physical Location & Seq

Genomic Coordinates Reverse (-)

32220885 .. 32226719

Gene Structure 5835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGACTACAACAACAAACTCGTCCTCGCACCCATGGTTCGCATTGGCACTCTGCCATTTAGATTACTTGCTGCTGATTACGGTGCTGACATAACCTACGGCGAGGAAATTATCGATCATAAGCTCATCAAATGCCACCGCAGAGTGAATGAGCAATTAGGGTCCATTGATTTTGTGGAGAAGGGGACAGGAGCTGTTGTTTTCAGAACATGCGACGAGGAACGGGATCGGGTTGTGTTTCAAATGGGTACTTCTGATGCTGTACGGGCCCTCAATGCTGCTCACATTGTGTGTAAAGATGTCGCCGCAGTAGATATAAATATGGGTTGCCCAAGGTCATTTTCTGTGAGTGGAGGAATGGGTGCTGCATTATTGTCAAAACCCGATCTTATTCATGATATTATGACTACATTGAGGAGGAACATGGATATATCTGTGACGTGTAAGATTCGACTACTGAAATCATCTCAGGATACTGTGGAATTGGCGAGACGAATTGAAAAAACTGGGGTTTCCGCTCTTGCTGTTCATGGAAGAAGAGTTGCAGATAGGCCACGGGATCCAGCAAAGTGGAGTGAGATTGCTGATATCGTAGCATCATTATCCATTCCAGTCATAGCAAACGGCGATGTTTTTGAGTATGATGATTTTCAGCGCATCAAAGTTGCTACAGGTGCCTCATCAGTAATGGCTGCAAGAGGAGCACTTTGGAATGCTTCAATTTTCAGTCCGAAGGGCAAACTACCATGGGAAGACGTGAAAAGGGAATACGTTAGGAAGGCAAGTTTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0002943 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004857 GO:0004860 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006469 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010467 GO:0010563 GO:0010605 GO:0010941 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0034470 GO:0034641 GO:0034660 GO:0042325 GO:0042326 GO:0043086 GO:0043170 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0055114 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

264

Amino Acids

29.1

Weight (kDa)

8.78

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	9 - 254	6.4e-53	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49640 AT3G49640
malus_domestica	MD06G1013700.v1.1
prunus_persica	Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0214881
rosa_laevigata	RLG00000002712
rosa_multiflora	Rmu_ssc0000134.1_g000003
rosa_roxburghii	Rroxscaffold_3G00244940
rosa_rugosa	Rorug07G0147900 Rorug07G0148000.1
rosa_samantha	Rh7BG275800 Rh7DG288400
rosa_wichuraiana	Rw7G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	674
AccBSI	CCGCTC	1 cut(s)	518
AciI	CCGC	3 cut(s)	139, 306, 516
AclWI	GGATC	3 cut(s)	234, 554, 567
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	250, 264
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	3 cut(s)	242, 500, 720
AjiI	CACGTC	2 cut(s)	441, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	2 cut(s)	124, 194
AluI	AGCT	2 cut(s)	124, 194
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	3 cut(s)	234, 554, 567
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	267, 551
ApaI	GGGCCC	1 cut(s)	271
ApeKI	GCWGC	4 cut(s)	71, 278, 365, 692
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	3 cut(s)	162, 267, 268
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	4 cut(s)	58, 265, 352, 679
BceAI	ACGGC	2 cut(s)	115, 640
BcgI	CGANNNNNNTGC	1 cut(s)	771
BciVI	GTATCC	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	484
BfmI	CTRYAG	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	5 cut(s)	72, 279, 306, 366, 693
BlsI	GCNGC	5 cut(s)	73, 280, 307, 367, 694
Bme18I	GGWCC	1 cut(s)	162
BmgBI	CACGTC	2 cut(s)	441, 757
BmgT120I	GGNCC	3 cut(s)	162, 267, 268
BmiI	GGNNCC	4 cut(s)	163, 269, 561, 676
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	247, 605, 666
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	759
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	4 cut(s)	33, 332, 554, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse1I	ACTGG	2 cut(s)	511, 611
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	4 cut(s)	33, 332, 554, 746
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	2 cut(s)	511, 611
BseRI	GAGGAG	2 cut(s)	430, 714
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	4 cut(s)	58, 265, 352, 679
BshFI	GGCC	2 cut(s)	269, 553
BshNI	GGYRCC	1 cut(s)	674
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	484
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	269, 553
Bsp120I	GGGCCC	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	271, 706
Bsp143I	GATC	4 cut(s)	115, 226, 385, 559
Bsp19I	CCATGG	2 cut(s)	33, 746
BspACI	CCGC	3 cut(s)	139, 306, 516
BspANI	GGCC	2 cut(s)	269, 553
BspCNI	CTCAG	1 cut(s)	481
BspDI	ATCGAT	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	163, 269, 561, 676
BspPI	GGATC	3 cut(s)	234, 554, 567
BspT107I	GGYRCC	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	511, 611
BssECI	CCNNGG	4 cut(s)	33, 332, 554, 746
BssMI	GATC	4 cut(s)	115, 226, 385, 559
BssT1I	CCWWGG	3 cut(s)	33, 332, 746
Bst4CI	ACNGT	2 cut(s)	83, 478
Bst6I	CTCTTC	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	468
BstDSI	CCRYGG	3 cut(s)	33, 554, 746
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	4 cut(s)	118, 229, 388, 562
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	4 cut(s)	115, 226, 385, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 275, 674, 701
BstNSI	RCATGY	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	4 cut(s)	58, 265, 352, 679
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	269, 553
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	3 cut(s)	33, 554, 746
BtgZI	GCGATG	1 cut(s)	642
BtrI	CACGTC	2 cut(s)	441, 757
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	162, 267, 268
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	249, 263
CviAII	CATG	6 cut(s)	34, 210, 395, 424, 530, 747
CviJI	RGCY	5 cut(s)	124, 194, 269, 553, 692
CviKI_1	RGCY	5 cut(s)	124, 194, 269, 553, 692
CviQI	GTAC	2 cut(s)	249, 263
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	4 cut(s)	117, 228, 387, 561
DpnII	GATC	4 cut(s)	115, 226, 385, 559
DraIII	CACNNNGTG	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Eco130I	CCWWGG	3 cut(s)	33, 332, 746
Eco24I	GRGCYC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	33, 332, 746
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	33, 332, 746
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	6 cut(s)	37, 213, 398, 427, 533, 750
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	6 cut(s)	33, 209, 394, 423, 529, 746
Fnu4HI	GCNGC	5 cut(s)	72, 279, 306, 366, 693
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	5 cut(s)	72, 279, 306, 366, 693
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	5 cut(s)	72, 279, 306, 366, 693
HaeIII	GGCC	2 cut(s)	269, 553
HhaI	GCGC	1 cut(s)	657
Hin1II	CATG	6 cut(s)	37, 213, 398, 427, 533, 750
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HinfI	GANTC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	206, 256, 732
Hpy188III	TCNNGA	2 cut(s)	395, 470
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	175, 727, 772
HpyCH4III	ACNGT	2 cut(s)	83, 478
HpyCH4IV	ACGT	3 cut(s)	440, 756, 771
HpyCH4V	TGCA	3 cut(s)	368, 545, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 275, 674, 701
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	3 cut(s)	440, 756, 771
Hsp92II	CATG	6 cut(s)	37, 213, 398, 427, 533, 750
HspAI	GCGC	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	115, 226, 385, 559
LmnI	GCTCC	2 cut(s)	191, 701
LpnPI	CCDG	6 cut(s)	174, 455, 492, 576, 624, 657
Lsp1109I	GCAGC	4 cut(s)	58, 265, 352, 679
LweI	GCATC	3 cut(s)	247, 605, 666
MaeII	ACGT	3 cut(s)	440, 756, 771
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	4 cut(s)	117, 228, 387, 561
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	4 cut(s)	115, 226, 385, 559
MboII	GAAGA	3 cut(s)	546, 549, 764
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	271, 706
MluCI	AATT	5 cut(s)	108, 155, 482, 495, 720
MnlI	CCTC	9 cut(s)	35, 97, 211, 281, 347, 408, 411, 688, 692
Mva1269I	GAATGC	1 cut(s)	718
MwoI	GCNNNNNNNGC	4 cut(s)	266, 275, 674, 701
NcoI	CCATGG	2 cut(s)	33, 746
NdeII	GATC	4 cut(s)	115, 226, 385, 559
NlaIII	CATG	6 cut(s)	37, 213, 398, 427, 533, 750
NlaIV	GGNNCC	4 cut(s)	163, 269, 561, 676
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	213
PagI	TCATGA	1 cut(s)	394
PctI	GAATGC	1 cut(s)	718
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	5 cut(s)	73, 280, 307, 367, 694
PspN4I	GGNNCC	4 cut(s)	163, 269, 561, 676
PspOMI	GGGCCC	1 cut(s)	267
PspPI	GGNCC	3 cut(s)	162, 267, 268
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	2 cut(s)	250, 264
RsaNI	GTAC	2 cut(s)	249, 263
SatI	GCNGC	5 cut(s)	72, 279, 306, 366, 693
Sau3AI	GATC	4 cut(s)	115, 226, 385, 559
Sau96I	GGNCC	3 cut(s)	162, 267, 268
SduI	GDGCHC	2 cut(s)	271, 706
SetI	ASST	8 cut(s)	98, 126, 196, 338, 443, 676, 759, 774
SfaNI	GCATC	3 cut(s)	247, 605, 666
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	5 cut(s)	108, 155, 482, 495, 720
SsiI	CCGC	3 cut(s)	139, 306, 516
StyI	CCWWGG	3 cut(s)	33, 332, 746
TaaI	ACNGT	2 cut(s)	83, 478
TaiI	ACGT	3 cut(s)	443, 759, 774
TaqI	TCGA	2 cut(s)	114, 451
TasI	AATT	5 cut(s)	108, 155, 482, 495, 720
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	4 cut(s)	71, 278, 365, 692
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	383, 518
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.