Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016142

Physical Location & Seq

Genomic Coordinates Forward (+)

1726637 .. 1732136

Gene Structure 5500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G015900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAGTACGAGAACAAACTCGTCCTTGCTCCCATGGTTCGCATTGGGACGCTGCCATTTAGATTACTGGCTGCCGAATATGGTGCGGATATAACCTACGGTGAGGAAATTATCGATCACAAACTTGTCAAATGCGACCGCAGATTAAATGAGAAAATAGGGTCCATTGATTTTGTTGAGAAGGGGACAGGAAGTGTCGTTTTCAGGACTTGTGATGAGGAAAAAGATCGAGTAGTGTTTCAAATGGGCACTTCTGATGCTGTAAGGGCTCTCATGGCTGCTCAGATGGTGTGTAAAGATGTTGCAGCAGTGGATATAAACATGGGTTGTCCAAAATCATTTTCTGTGAGTGGGGGAATGGGTGCCGCATTATTGACTAAACCAGATCTTATTCATGATATTTTGACTACATTAAGGAGGAACATGAGTATACCAGTGACTTGTAAGATTCGACTACTAAAATCATCTCAGGATACTGTGGAATTGGCCAGGCGAATTGAAAAAACTGGAGTTTCTGCTCTCGCTGTCCATGGAAGAAAAGTTCCAGATAGGCCACGAGATCCGGCTAAGTGGAGTGAGATTGCTGATGTTGTAGCATCACTATCCATTCCAGTTATAGCAAATGGCGATGTTTTTGAGTATGACGATTTTCAGCGTATTAAAGTTGCTACAGGTACCTCATCTGTGATGGTTGCAAGAGGAGCACTTTGGAATGCTTCAATTTTCTGTCCGAAGGGAAAATTACCATGGGAAGACGTGAAGAGAGAATATGTTAGGAAGAGTATCTTATGGGATAATGATATTAAAAGCACAAAGCACACACTGAAAGAAATGATAATGCATCATTCTTCCCTTGAACTCCCAGAAGGAAAGGCTGTGACAAAATCAGATTCCTTGGTAGATTTAGCGCGGCTCTATGGAGAGGAGAAGAGTTATGATTTTTTTGTTAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0002943 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004857 GO:0004860 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006469 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010467 GO:0010563 GO:0010605 GO:0010941 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0034470 GO:0034641 GO:0034660 GO:0042325 GO:0042326 GO:0043086 GO:0043170 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0055114 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

319

Amino Acids

35.43

Weight (kDa)

8.12

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49640 AT3G49640
malus_domestica	MD06G1013700.v1.1
prunus_persica	Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1 Prupe.5G015900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0214881
rosa_laevigata	RLG00000002712
rosa_multiflora	Rmu_ssc0000134.1_g000003
rosa_roxburghii	Rroxscaffold_3G00244940
rosa_rugosa	Rorug07G0147900 Rorug07G0148000.1
rosa_samantha	Rh7BG275800 Rh7DG288400
rosa_wichuraiana	Rw7G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	674
AccB1I	GGYRCC	2 cut(s)	362, 674
AccI	GTMKAC	1 cut(s)	430
AccII	CGCG	1 cut(s)	910
AciI	CCGC	4 cut(s)	86, 139, 366, 910
AclWI	GGATC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	486
AfaI	GTAC	2 cut(s)	8, 676
AgsI	TTSAA	4 cut(s)	242, 500, 720, 857
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	554
AoxI	GGCC	2 cut(s)	486, 551
ApeKI	GCWGC	4 cut(s)	52, 71, 278, 305
Asp718I	GGTACC	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	910
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	488
BanI	GGYRCC	2 cut(s)	362, 674
BanII	GRGCYC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	4 cut(s)	39, 58, 265, 317
BccI	CCATC	2 cut(s)	280, 682
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	490
BciVI	GTATCC	1 cut(s)	466
BfmI	CTRYAG	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	6 cut(s)	53, 72, 279, 306, 366, 911
BlsI	GCNGC	6 cut(s)	54, 73, 280, 307, 367, 912
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	163, 364, 676
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	3 cut(s)	247, 605, 850
BpiI	GAAGAC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	4 cut(s)	33, 529, 746, 894
Bse1I	ACTGG	4 cut(s)	72, 434, 511, 611
BseBI	CCWGG	1 cut(s)	490
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	4 cut(s)	33, 529, 746, 894
BseMII	CTCAG	2 cut(s)	296, 482
BseNI	ACTGG	4 cut(s)	72, 434, 511, 611
BseRI	GAGGAG	2 cut(s)	714, 938
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	4 cut(s)	39, 58, 265, 317
Bsh1236I	CGCG	1 cut(s)	910
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	488, 553
BshNI	GGYRCC	2 cut(s)	362, 674
BshVI	ATCGAT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	61, 199
BsmFI	GGGAC	2 cut(s)	61, 199
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	488, 553
Bsp1286I	GDGCHC	3 cut(s)	251, 271, 706
Bsp143I	GATC	4 cut(s)	115, 226, 385, 559
Bsp19I	CCATGG	3 cut(s)	33, 529, 746
BspACI	CCGC	4 cut(s)	86, 139, 366, 910
BspANI	GGCC	2 cut(s)	488, 553
BspCNI	CTCAG	2 cut(s)	295, 481
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	910
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	163, 364, 676
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	2 cut(s)	362, 674
BsrI	ACTGG	4 cut(s)	72, 434, 511, 611
BssECI	CCNNGG	4 cut(s)	33, 529, 746, 894
BssMI	GATC	4 cut(s)	115, 226, 385, 559
BssNAI	GTATAC	1 cut(s)	431
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	4 cut(s)	33, 529, 746, 894
Bst1107I	GTATAC	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	101, 478
Bst6I	CTCTTC	3 cut(s)	755, 773, 923
BstDEI	CTNAG	3 cut(s)	282, 468, 567
BstDSI	CCRYGG	3 cut(s)	33, 529, 746
BstFNI	CGCG	1 cut(s)	910
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	4 cut(s)	118, 229, 388, 562
BstMBI	GATC	4 cut(s)	115, 226, 385, 559
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 275, 701
BstNI	CCWGG	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	910
BstV1I	GCAGC	4 cut(s)	39, 58, 265, 317
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	2 cut(s)	385, 559
BstYI	RGATCY	2 cut(s)	385, 559
BstZ17I	GTATAC	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	488, 553
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	3 cut(s)	33, 529, 746
BtgZI	GCGATG	1 cut(s)	642
BtrI	CACGTC	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	315, 441, 821
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	1 cut(s)	910
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	7, 675
CviAII	CATG	7 cut(s)	34, 274, 322, 395, 424, 530, 747
CviJI	RGCY	8 cut(s)	71, 269, 278, 488, 553, 566, 875, 913
CviKI_1	RGCY	8 cut(s)	71, 269, 278, 488, 553, 566, 875, 913
CviQI	GTAC	2 cut(s)	7, 675
DdeI	CTNAG	3 cut(s)	282, 468, 567
DpnI	GATC	4 cut(s)	117, 228, 387, 561
DpnII	GATC	4 cut(s)	115, 226, 385, 559
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	755, 773, 923
EarI	CTCTTC	3 cut(s)	755, 773, 923
Eco130I	CCWWGG	4 cut(s)	33, 529, 746, 894
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	4 cut(s)	33, 529, 746, 894
EcoT22I	ATGCAT	1 cut(s)	843
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	4 cut(s)	33, 529, 746, 894
FaeI	CATG	7 cut(s)	37, 277, 325, 398, 427, 533, 750
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	2 cut(s)	61, 199
FatI	CATG	7 cut(s)	33, 273, 321, 394, 423, 529, 746
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	6 cut(s)	53, 72, 279, 306, 366, 911
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	6 cut(s)	53, 72, 279, 306, 366, 911
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	6 cut(s)	53, 72, 279, 306, 366, 911
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	488, 553
HapII	CCGG	1 cut(s)	563
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	910
Hin1II	CATG	7 cut(s)	37, 277, 325, 398, 427, 533, 750
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HinfI	GANTC	2 cut(s)	448, 890
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	256, 285, 732, 889
Hpy188III	TCNNGA	4 cut(s)	205, 395, 470, 545
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	175, 727, 860
HpyCH4III	ACNGT	2 cut(s)	101, 478
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	3 cut(s)	305, 695, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 275, 701
HpyF3I	CTNAG	3 cut(s)	282, 468, 567
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	7 cut(s)	37, 277, 325, 398, 427, 533, 750
HspAI	GCGC	1 cut(s)	908
KpnI	GGTACC	1 cut(s)	678
Kzo9I	GATC	4 cut(s)	115, 226, 385, 559
LmnI	GCTCC	2 cut(s)	34, 701
Lsp1109I	GCAGC	4 cut(s)	39, 58, 265, 317
LweI	GCATC	3 cut(s)	247, 605, 850
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	2 cut(s)	436, 877
MalI	GATC	4 cut(s)	117, 228, 387, 561
MboI	GATC	4 cut(s)	115, 226, 385, 559
MboII	GAAGA	6 cut(s)	546, 764, 772, 790, 840, 940
MflI	RGATCY	2 cut(s)	385, 559
MhlI	GDGCHC	3 cut(s)	251, 271, 706
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	5 cut(s)	108, 482, 495, 720, 740
MluNI	TGGCCA	1 cut(s)	488
MnlI	CCTC	6 cut(s)	97, 211, 411, 688, 692, 916
Mox20I	TGGCCA	1 cut(s)	488
Mph1103I	ATGCAT	1 cut(s)	843
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	5 cut(s)	146, 413, 660, 804, 948
Msp20I	TGGCCA	1 cut(s)	488
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	490
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	1 cut(s)	910
MwoI	GCNNNNNNNGC	3 cut(s)	266, 275, 701
NcoI	CCATGG	3 cut(s)	33, 529, 746
NdeII	GATC	4 cut(s)	115, 226, 385, 559
NlaIII	CATG	7 cut(s)	37, 277, 325, 398, 427, 533, 750
NlaIV	GGNNCC	3 cut(s)	163, 364, 676
NmuCI	GTSAC	2 cut(s)	436, 877
NsiI	ATGCAT	1 cut(s)	843
PagI	TCATGA	1 cut(s)	394
PctI	GAATGC	1 cut(s)	718
PfeI	GAWTC	2 cut(s)	448, 890
PkrI	GCNGC	6 cut(s)	54, 73, 280, 307, 367, 912
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	163, 364, 676
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	2 cut(s)	385, 559
RsaI	GTAC	2 cut(s)	8, 676
RsaNI	GTAC	2 cut(s)	7, 675
SaqAI	TTAA	5 cut(s)	146, 413, 660, 804, 948
SatI	GCNGC	6 cut(s)	53, 72, 279, 306, 366, 911
Sau3AI	GATC	4 cut(s)	115, 226, 385, 559
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	3 cut(s)	251, 271, 706
SetI	ASST	4 cut(s)	98, 676, 680, 759
SfaNI	GCATC	3 cut(s)	247, 605, 850
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	5 cut(s)	108, 482, 495, 720, 740
SsiI	CCGC	4 cut(s)	86, 139, 366, 910
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	4 cut(s)	33, 529, 746, 894
TaaI	ACNGT	2 cut(s)	101, 478
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	3 cut(s)	114, 229, 451
TasI	AATT	5 cut(s)	108, 482, 495, 720, 740
TauI	GCSGC	2 cut(s)	368, 913
TfiI	GAWTC	2 cut(s)	448, 890
Tru1I	TTAA	5 cut(s)	146, 413, 660, 804, 948
Tru9I	TTAA	5 cut(s)	146, 413, 660, 804, 948
TscAI	CASTG	3 cut(s)	315, 441, 828
TseFI	GTSAC	2 cut(s)	436, 877
TseI	GCWGC	4 cut(s)	52, 71, 278, 305
Tsp45I	GTSAC	2 cut(s)	436, 877
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	315, 441, 828
VpaK11BI	GGWCC	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	430
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.