Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014207

Physical Location & Seq

Genomic Coordinates Forward (+)

18522466 .. 18523934

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGACCAAAACCCGGATTCTCAACCCGACCCGATTCCCTTCTCCCAAACCCTTACGTGGCTGCGGCGACGCTAACTTCATGGAACAGCTCCTCCTTCACTGCGCCACCGCCATAGACTCCAACGACGCTGCATTAACTCACCAAATCCTCTGGGTCCTCAACAACATCGCTCCACCAGACGGTGACTCCACCCAACGTCTTACATCCGCATTCCTCCGCGCGTTGCTCTCACGCGCCGTCTCCAAAACCCCTACACTATCATCCACCATTAGCTTCCTACCTCAGGCCGATGAACTCCATCGTTTCTCAGTCGTGGAGTTAGCCGCTTTCGTAGACCTCACTCCGTGGCACCGGTTCGGATTCATTGCAGCCAACGCCGCGATCTTAACCGCCGTTGAAGGTTACTCAACGGTTCACATCGTTGACTTAAGTTTGACTCATTGTATGCAAATCCCTACTCTTATAGACGCCATGGCAAGCCGACTCAACAAACCTCCTCCGCTTCTTAAACTCACCGTCGTCTCTTCCTCCGACCACTTCCCACCATTCATCAACATCTCCTACGAAGAACTCGGATCTAAACTAGTCAACTTCGCCACCACACGAAACATTACAATGGAGTTCACAATCGTACCTTCTACTTACTCCGATGGCTTCTCCTCCCTCTTACAACAGTTACGGATTTATCCTTCTTCATTCAACGAAGCTCTCGTCGTTAACTGTCACATGATGCTCCGTTACATCCCTGAAGAACCCCTAACTTCATCATCATCATCGCTCCGAACAGTTTTCTTGAAACAACTCCGATCTTTGAATCCAAGAATCGTAACCCTAATCGAAGAAGACGTAGATCTCACATCGGAGAACTTGGTTAACCGGTTAAAATCGGCGTTTAACTACTTCTGGATTCCGTTCGATACGACGGACACGTTTATGAGTGAGCAGAGACGGTGGTACGAGGCGGAGATAAGTTGGAAGATAGAAAACGTGGTGGCGAAGGAAGGTGCGGAGAGAGTGGAGAGGACGGAGACGAAGAGACGGTGGATAGAGAGAATGAGAGAGGCTGAGTTCGGTGGAGTTAGGGTTAAAGAAGATGCGGTGGCGGATGTGAAGGCGATGCTGGAGGAGCACGCTGTCGGGTGGGGAATGAAGAAGGAAGACGACGACGAGAGTCTCGTGCTGACGTGGAAAGGTCATAGTGTTGTGTTTGCTACCGTTTGGGTTCCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

410

Amino Acids

46.35

Weight (kDa)

5.75

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	27 - 407	4.6e-108	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49950
fragaria_vesca	FvH4_1g17370
malus_domestica	MD00G1112400.v1.1 MD15G1294400.v1.1 MD15G1294600.v1.1
prunus_persica	Prupe.6G223200_v2.0.a1
pyrus_communis	pycom02g14830
rosa_chinensis	RchiOBHm_Chr2g0107531
rosa_laevigata	RLG00000017589
rosa_multiflora	Rmu_co8494603.1_g000001 Rmu_sc0001065.1_g000018
rosa_rugosa	Rorug02G0144800
rosa_samantha	Rh2AG194600 Rh2BG207300 Rh2CG199800 Rh2DG201900
rosa_wichuraiana	Rw2G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	4 cut(s)	219, 221, 234, 380
AclWI	GGATC	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	768
AcyI	GRCGYC	1 cut(s)	468
AdeI	CACNNNGTG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	633, 956
AfiI	CCNNNNNNNGG	4 cut(s)	12, 56, 179, 283
AflII	CTTAAG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	927
AgeI	ACCGGT	2 cut(s)	351, 876
AgsI	TTSAA	4 cut(s)	398, 700, 796, 814
AhlI	ACTAGT	1 cut(s)	583
AjiI	CACGTC	1 cut(s)	1185
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	88, 273, 707
AluI	AGCT	3 cut(s)	88, 273, 707
Alw21I	GWGCWC	1 cut(s)	1131
Alw26I	GTCTC	6 cut(s)	244, 526, 940, 1022, 1030, 1178
AlwI	GGATC	1 cut(s)	583
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	3 cut(s)	60, 128, 368
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
AsiGI	ACCGGT	2 cut(s)	351, 876
AspLEI	GCGC	3 cut(s)	104, 221, 236
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	131, 194, 505
AvaII	GGWCC	1 cut(s)	154
AxyI	CCTNAGG	1 cut(s)	282
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BanI	GGYRCC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	1175
BbsI	GAAGAC	2 cut(s)	849, 1164
Bbv12I	GWGCWC	1 cut(s)	1131
BbvI	GCAGC	3 cut(s)	47, 115, 380
BccI	CCATC	2 cut(s)	306, 644
BceAI	ACGGC	2 cut(s)	221, 377
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	6 cut(s)	244, 526, 940, 1022, 1030, 1178
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	1 cut(s)	584
BfrI	CTTAAG	1 cut(s)	427
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	6 cut(s)	61, 64, 129, 324, 369, 378
BlsI	GCNGC	6 cut(s)	62, 65, 130, 325, 370, 379
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	1185
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	3 cut(s)	155, 350, 1224
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	3 cut(s)	720, 1084, 1107
BoxI	GACNNNNGTC	1 cut(s)	1170
BpiI	GAAGAC	2 cut(s)	849, 1164
BpmI	CTGGAG	1 cut(s)	1142
BpuMI	CCSGG	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	344, 471
BsaWI	WCCGGW	2 cut(s)	351, 876
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 170, 200, 1068, 1098
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 56, 179, 283
Bse118I	RCCGGY	2 cut(s)	351, 876
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	344, 471
BseGI	GGATG	4 cut(s)	203, 260, 741, 1111
BseLI	CCNNNNNNNGG	4 cut(s)	12, 56, 179, 283
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	296, 321, 1056
BseRI	GAGGAG	4 cut(s)	80, 486, 649, 1139
BseXI	GCAGC	3 cut(s)	47, 115, 380
Bsh1236I	CGCG	4 cut(s)	219, 221, 234, 380
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	348
BshTI	ACCGGT	2 cut(s)	351, 876
BsiHKAI	GWGCWC	1 cut(s)	1131
BsiSI	CCGG	3 cut(s)	13, 352, 877
BslI	CCNNNNNNNGG	4 cut(s)	12, 56, 179, 283
BsmAI	GTCTC	6 cut(s)	244, 526, 940, 1022, 1030, 1178
BsmBI	CGTCTC	5 cut(s)	244, 526, 940, 1022, 1030
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	1131
Bsp143I	GATC	4 cut(s)	381, 575, 806, 850
Bsp19I	CCATGG	1 cut(s)	471
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	3 cut(s)	295, 320, 1057
BspFNI	CGCG	4 cut(s)	219, 221, 234, 380
BspLI	GGNNCC	3 cut(s)	155, 350, 1224
BspPI	GGATC	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	2 cut(s)	351, 876
BssAI	RCCGGY	2 cut(s)	351, 876
BssECI	CCNNGG	2 cut(s)	344, 471
BssMI	GATC	4 cut(s)	381, 575, 806, 850
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	1 cut(s)	1175
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	1175
Bst4CI	ACNGT	9 cut(s)	182, 412, 517, 675, 722, 787, 951, 1041, 1216
Bst6I	CTCTTC	2 cut(s)	529, 1028
BstACI	GRCGYC	1 cut(s)	468
BstAFI	CTTAAG	1 cut(s)	427
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	478, 1131
BstDEI	CTNAG	3 cut(s)	282, 307, 1065
BstDSI	CCRYGG	2 cut(s)	344, 471
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	4 cut(s)	203, 260, 741, 1111
BstFNI	CGCG	4 cut(s)	219, 221, 234, 380
BstHHI	GCGC	3 cut(s)	104, 221, 236
BstKTI	GATC	4 cut(s)	384, 578, 809, 853
BstMAI	GTCTC	6 cut(s)	244, 526, 940, 1022, 1030, 1178
BstMBI	GATC	4 cut(s)	381, 575, 806, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 377, 1126
BstPAI	GACNNNNGTC	1 cut(s)	1170
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	4 cut(s)	219, 221, 234, 380
BstV1I	GCAGC	3 cut(s)	47, 115, 380
BstV2I	GAAGAC	2 cut(s)	849, 1164
BstX2I	RGATCY	2 cut(s)	575, 850
BstYI	RGATCY	2 cut(s)	575, 850
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	2 cut(s)	344, 471
BtgZI	GCGATG	3 cut(s)	151, 759, 1130
BtrI	CACGTC	1 cut(s)	1185
BtsCI	GGATG	4 cut(s)	203, 260, 741, 1111
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	478, 1131
CfoI	GCGC	3 cut(s)	104, 221, 236
Cfr10I	RCCGGY	2 cut(s)	351, 876
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	3 cut(s)	77, 134, 476
Csp6I	GTAC	2 cut(s)	632, 955
CspAI	ACCGGT	2 cut(s)	351, 876
CviAII	CATG	3 cut(s)	79, 472, 727
CviQI	GTAC	2 cut(s)	632, 955
DdeI	CTNAG	3 cut(s)	282, 307, 1065
DpnI	GATC	4 cut(s)	383, 577, 808, 852
DpnII	GATC	4 cut(s)	381, 575, 806, 850
DraIII	CACNNNGTG	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	529, 1028
EarI	CTCTTC	2 cut(s)	529, 1028
EciI	GGCGGA	2 cut(s)	977, 1118
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	768
Eco81I	CCTNAGG	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	5 cut(s)	244, 526, 940, 1022, 1030
FaeI	CATG	3 cut(s)	82, 475, 730
FaiI	YATR	8 cut(s)	80, 113, 446, 464, 473, 728, 935, 1197
FatI	CATG	3 cut(s)	78, 471, 726
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	6 cut(s)	61, 64, 129, 324, 369, 378
FokI	GGATG	4 cut(s)	190, 247, 728, 1118
Fsp4HI	GCNGC	6 cut(s)	61, 64, 129, 324, 369, 378
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	3 cut(s)	103, 220, 235
GluI	GCNGC	6 cut(s)	61, 64, 129, 324, 369, 378
GsuI	CTGGAG	1 cut(s)	1142
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	3 cut(s)	13, 352, 877
HgaI	GACGC	3 cut(s)	77, 134, 476
HhaI	GCGC	3 cut(s)	104, 221, 236
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	82, 475, 730
Hin6I	GCGC	3 cut(s)	102, 219, 234
HinP1I	GCGC	3 cut(s)	102, 219, 234
HincII	GTYRAC	4 cut(s)	424, 589, 718, 874
HindII	GTYRAC	4 cut(s)	424, 589, 718, 874
HpaI	GTTAAC	2 cut(s)	718, 874
HpaII	CCGG	3 cut(s)	13, 352, 877
HphI	GGTGA	3 cut(s)	131, 194, 505
Hpy166II	GTNNAC	7 cut(s)	334, 415, 424, 589, 624, 718, 874
Hpy188I	TCNGA	7 cut(s)	359, 532, 575, 649, 782, 806, 862
Hpy188III	TCNNGA	2 cut(s)	793, 904
Hpy8I	GTNNAC	7 cut(s)	334, 415, 424, 589, 624, 718, 874
Hpy99I	CGWCG	7 cut(s)	71, 128, 521, 716, 925, 1166, 1169
HpyAV	CCTTC	9 cut(s)	48, 104, 392, 645, 699, 991, 995, 1105, 1147
HpyCH4III	ACNGT	9 cut(s)	182, 412, 517, 675, 722, 787, 951, 1041, 1216
HpyCH4IV	ACGT	6 cut(s)	55, 196, 846, 929, 987, 1184
HpyCH4V	TGCA	3 cut(s)	131, 368, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 377, 1126
HpyF3I	CTNAG	3 cut(s)	282, 307, 1065
HpySE526I	ACGT	6 cut(s)	55, 196, 846, 929, 987, 1184
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	82, 475, 730
HspAI	GCGC	3 cut(s)	102, 219, 234
KspAI	GTTAAC	2 cut(s)	718, 874
Kzo9I	GATC	4 cut(s)	381, 575, 806, 850
LmnI	GCTCC	5 cut(s)	93, 175, 738, 783, 1126
LpnPI	CCDG	9 cut(s)	26, 136, 189, 269, 365, 759, 889, 890, 1106
Lsp1109I	GCAGC	3 cut(s)	47, 115, 380
LweI	GCATC	3 cut(s)	720, 1084, 1107
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	6 cut(s)	55, 196, 846, 929, 987, 1184
MaeIII	GTNAC	6 cut(s)	182, 401, 675, 722, 737, 826
MalI	GATC	4 cut(s)	383, 577, 808, 852
MboI	GATC	4 cut(s)	381, 575, 806, 850
MflI	RGATCY	2 cut(s)	575, 850
MhlI	GDGCHC	1 cut(s)	1131
MlyI	GAGTC	5 cut(s)	110, 179, 430, 477, 1180
MmeI	TCCRAC	3 cut(s)	144, 555, 953
MslI	CAYNNNNRTG	2 cut(s)	614, 932
MspCI	CTTAAG	1 cut(s)	427
MspI	CCGG	3 cut(s)	13, 352, 877
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	209
MvnI	CGCG	4 cut(s)	219, 221, 234, 380
MwoI	GCNNNNNNNGC	3 cut(s)	374, 377, 1126
NciI	CCSGG	1 cut(s)	13
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	4 cut(s)	381, 575, 806, 850
NlaIII	CATG	3 cut(s)	82, 475, 730
NlaIV	GGNNCC	3 cut(s)	155, 350, 1224
NmuCI	GTSAC	2 cut(s)	182, 722
PcsI	WCGNNNNNNNCGW	4 cut(s)	708, 843, 926, 1173
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	6 cut(s)	16, 33, 360, 814, 822, 907
PinAI	ACCGGT	2 cut(s)	351, 876
PkrI	GCNGC	6 cut(s)	62, 65, 130, 325, 370, 379
PleI	GAGTC	5 cut(s)	110, 179, 430, 477, 1179
PpsI	GAGTC	5 cut(s)	110, 179, 430, 477, 1179
Ppu21I	YACGTR	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	154
PshAI	GACNNNNGTC	1 cut(s)	1170
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	155, 350, 1224
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	575, 850
RsaI	GTAC	2 cut(s)	633, 956
RsaNI	GTAC	2 cut(s)	632, 955
RseI	CAYNNNNRTG	2 cut(s)	614, 932
SatI	GCNGC	6 cut(s)	61, 64, 129, 324, 369, 378
Sau3AI	GATC	4 cut(s)	381, 575, 806, 850
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	5 cut(s)	110, 179, 430, 477, 1180
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	1131
SfaNI	GCATC	3 cut(s)	720, 1084, 1107
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	614, 932
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SpeI	ACTAGT	1 cut(s)	583
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	9 cut(s)	182, 412, 517, 675, 722, 787, 951, 1041, 1216
TaiI	ACGT	6 cut(s)	58, 199, 849, 932, 990, 1187
TaqI	TCGA	2 cut(s)	837, 915
TauI	GCSGC	3 cut(s)	66, 326, 380
TfiI	GAWTC	6 cut(s)	16, 33, 360, 814, 822, 907
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	2 cut(s)	182, 722
TseI	GCWGC	3 cut(s)	60, 128, 368
Tsp45I	GTSAC	2 cut(s)	182, 722
TspDTI	ATGAA	7 cut(s)	67, 306, 352, 538, 684, 753, 1163
TspGWI	ACGGA	6 cut(s)	333, 694, 725, 900, 938, 1040
TspRI	CASTG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.