MD15G1294600.v1.1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
27506241 .. 27507587
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1294600.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGATGAACAAAAACCAAACCTACCGCACGCGCCTGTGGCCTGGCTTTCCGACCTCTAAGTCCCTAGGAACAAACTTTGGCGACGCCAACTGCATGGAGCAGCTGCTCGTCCACTGCGCTAAAGCCATCGAAACCAACGACGCCACCCTAGCCCAGCAGATCCTCTGGGTCCTCAACAACATCGCCCCCCAAGACGGCGACTCCAACCAGCGCCTCACCTGCGCGTTTCTCCGAGCCCTCATTGCCCGCGCAGCCCGAATCGGAAGCTGTAAGGTCCTCGCCGCCATGGCCAACTCCCAAGCCAACTTCACCATCCACACTCACAAGTTCTCCGTCGTTGAGCTCGCCTCCTTCATCGACCTGACACCGTGGCACAGGTTCGGATTCACCGCCGCAAATGCAGCCATTCTAGAAGCTGTTGAAGGGTATTCTGTAGTTCACATTGTTGACCTGAGCTTGACGCACTGCATGCAAATCCCAACTCTGGTCGACGCCATTGCCAGCCGTCAGGACGGTAATGTGAGTCCTCCATTGCTGAAGCTCACTGTGGCGGGTACCATGGAGGACGTCCCTCCAATGCTGGACCTGTCATACGAGGAACTGGGTTCCAAGTTGGTTAATTTTGCAAGGTCAAGAAACATCATTTTAGAGTTTAGGGTCATCCCGTCAAGTTACACTGATGGGTTTGCCAACCTAATCCAACAACTCCGCGTACAAAATTTAGTATATGCGGAGAGTGGTGAGGCGCTTGTAGTGAATTGCCACATGATGCTTCACTACATTTCTGAAGAGGCATTGACACTTCCAGCAATCAATCCGAATCCAATCAGTAGTGGTTCGACTAGCTCTTACGCTTTTGATGTAGCTTCGTCCTCTTTGAGTTCGTCGCTAAGGACAATGTTTCTGAAAGAGCTTCGGGGTTTGGACCCGACGATTGTGGTTTTGGTGGACGAAGATGTGGATTTGACATCGAATAATCCAGTGTGTAGATTGAGGTCGGCCTTCAATTACCTGTGGATACCTTATGACACCTTGGACACATTTTTGCCGCGGGGAAGCAAGCAGAGGCAGTGGTACGAGGCGGATGTGTGTTGGAAGATTGAGAACGTGATAGCGTACGATGGCTTTCAGAGGGTGGAGAGGCTGGAGCAGAAATGCAGGTGGGTGCAGCGAATGCGAAATGCCAACTTTCGAAGCGTTTCATTTGGGGAAGATGCGGTTTCGGAAGTGAAGGCCATGCTTGATGAACATGCAGCTGGTTGGGGATTGAAGAGAGAAGAAGAAGATGTTGTGCTTACATGGAAAGGACACAATGTTGTGTTTGCCACAGCCTGGATGCCTGCTTAA

Protein Analysis

449

Amino Acids

50.09

Weight (kDa)

5.63

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 32 - 445 1.2e-90 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014207)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 227, 1149
AasI GACNNNNNNGTC 1 cut(s) 58
AatII GACGTC 1 cut(s) 570
Acc36I ACCTGC 2 cut(s) 227, 1149
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 1332
AccI GTMKAC 1 cut(s) 489
AccII CGCG 5 cut(s) 31, 224, 249, 711, 1051
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 718
AcuI CTGAAG 2 cut(s) 557, 807
AcyI GRCGYC 4 cut(s) 84, 141, 492, 567
AfaI GTAC 4 cut(s) 556, 714, 1076, 1118
AfiI CCNNNNNNNGG 3 cut(s) 194, 484, 1332
AgsI TTSAA 3 cut(s) 422, 1006, 1270
AjnI CCWGG 2 cut(s) 40, 1331
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 1 cut(s) 154
AoxI GGCC 4 cut(s) 38, 288, 999, 1233
ApeKI GCWGC 6 cut(s) 100, 103, 251, 401, 1168, 1253
ApoI RAATTY 1 cut(s) 718
Asp700I GAANNNNTTC 1 cut(s) 1198
Asp718I GGTACC 1 cut(s) 554
AspA2I CCTAGG 1 cut(s) 64
AspLEI GCGC 6 cut(s) 33, 119, 213, 224, 251, 748
AspS9I GGNCC 4 cut(s) 169, 274, 583, 925
AsuHPI GGTGA 4 cut(s) 208, 301, 379, 752
AsuII TTCGAA 1 cut(s) 1192
AvaII GGWCC 4 cut(s) 169, 274, 583, 925
AvrII CCTAGG 1 cut(s) 64
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 2 cut(s) 238, 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 6 cut(s) 90, 112, 263, 413, 1180, 1265
BccI CCATC 4 cut(s) 134, 320, 674, 1115
BceAI ACGGC 2 cut(s) 211, 489
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 2 cut(s) 42, 1333
BciVI GTATCC 1 cut(s) 1011
BfaI CTAG 4 cut(s) 65, 149, 410, 843
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 2 cut(s) 214, 749
BfuAI ACCTGC 2 cut(s) 227, 1149
BfuI GTATCC 1 cut(s) 1011
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 9 cut(s) 101, 104, 252, 282, 393, 402, 1049, 1169, 1254
BlnI CCTAGG 1 cut(s) 64
BlsI GCNGC 9 cut(s) 102, 105, 253, 283, 394, 403, 1050, 1170, 1255
Bme1390I CCNGG 2 cut(s) 42, 1333
Bme18I GGWCC 4 cut(s) 169, 274, 583, 925
BmgT120I GGNCC 4 cut(s) 169, 274, 583, 925
BmiI GGNNCC 4 cut(s) 170, 556, 607, 927
BmrFI CCNGG 2 cut(s) 42, 1333
BmrI ACTGGG 1 cut(s) 611
BmsI GCATC 3 cut(s) 759, 1204, 1326
BmuI ACTGGG 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 1166
Bpu10I CCTNAGC 2 cut(s) 452, 890
Bpu14I TTCGAA 1 cut(s) 1192
BsaHI GRCGYC 4 cut(s) 84, 141, 492, 567
BsaJI CCNNGG 6 cut(s) 64, 285, 368, 558, 1032, 1049
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 314, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 484, 1332
Bse1I ACTGG 2 cut(s) 606, 980
Bse3DI GCAATG 3 cut(s) 240, 495, 530
BseBI CCWGG 2 cut(s) 42, 1333
BseDI CCNNGG 6 cut(s) 64, 285, 368, 558, 1032, 1049
BseGI GGATG 4 cut(s) 312, 660, 1090, 1341
BseLI CCNNNNNNNGG 3 cut(s) 194, 484, 1332
BseMI GCAATG 3 cut(s) 240, 495, 530
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 606, 980
BseXI GCAGC 6 cut(s) 90, 112, 263, 413, 1180, 1265
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 1187
Bsh1236I CGCG 5 cut(s) 31, 224, 249, 711, 1051
BshFI GGCC 4 cut(s) 40, 290, 1001, 1235
BshNI GGYRCC 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 345
BsiWI CGTACG 1 cut(s) 1116
BslFI GGGAC 2 cut(s) 46, 554
BslI CCNNNNNNNGG 3 cut(s) 194, 484, 1332
BsmFI GGGAC 2 cut(s) 46, 554
BsmI GAATGC 1 cut(s) 1179
BsnI GGCC 4 cut(s) 40, 290, 1001, 1235
Bsp119I TTCGAA 1 cut(s) 1192
Bsp1286I GDGCHC 2 cut(s) 238, 345
Bsp143I GATC 1 cut(s) 159
Bsp19I CCATGG 2 cut(s) 285, 558
BspANI GGCC 4 cut(s) 40, 290, 1001, 1235
BspCNI CTCAG 1 cut(s) 444
BspFNI CGCG 5 cut(s) 31, 224, 249, 711, 1051
BspLI GGNNCC 4 cut(s) 170, 556, 607, 927
BspMI ACCTGC 2 cut(s) 227, 1149
BspPI GGATC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 1192
BspT107I GGYRCC 1 cut(s) 554
BsrDI GCAATG 3 cut(s) 240, 495, 530
BsrI ACTGG 2 cut(s) 606, 980
BssECI CCNNGG 6 cut(s) 64, 285, 368, 558, 1032, 1049
BssMI GATC 1 cut(s) 159
BssNI GRCGYC 4 cut(s) 84, 141, 492, 567
BssT1I CCWWGG 4 cut(s) 64, 285, 558, 1032
Bst2UI CCWGG 2 cut(s) 42, 1333
Bst4CI ACNGT 3 cut(s) 369, 515, 547
Bst6I CTCTTC 2 cut(s) 783, 1265
BstACI GRCGYC 4 cut(s) 84, 141, 492, 567
BstAPI GCANNNNNTGC 2 cut(s) 469, 1174
BstBI TTCGAA 1 cut(s) 1192
BstC8I GCNNGC 7 cut(s) 29, 247, 345, 470, 502, 1061, 1341
BstDEI CTNAG 3 cut(s) 57, 452, 890
BstDSI CCRYGG 4 cut(s) 285, 368, 558, 1049
BstF5I GGATG 4 cut(s) 312, 660, 1090, 1341
BstFNI CGCG 5 cut(s) 31, 224, 249, 711, 1051
BstH2I RGCGCY 2 cut(s) 214, 749
BstHHI GCGC 6 cut(s) 33, 119, 213, 224, 251, 748
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 42, 1333
BstNSI RCATGY 2 cut(s) 472, 1253
BstSCI CCNGG 2 cut(s) 40, 1331
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 5 cut(s) 31, 224, 249, 711, 1051
BstV1I GCAGC 6 cut(s) 90, 112, 263, 413, 1180, 1265
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 159
BsuI GTATCC 1 cut(s) 1011
BsuRI GGCC 4 cut(s) 40, 290, 1001, 1235
BtgI CCRYGG 4 cut(s) 285, 368, 558, 1049
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 4 cut(s) 312, 660, 1090, 1341
BtsI GCAGTG 3 cut(s) 112, 463, 1076
BtsIMutI CAGTG 6 cut(s) 112, 463, 543, 675, 987, 1076
BveI ACCTGC 2 cut(s) 227, 1149
Cac8I GCNNGC 7 cut(s) 29, 247, 345, 470, 502, 1061, 1341
CfoI GCGC 6 cut(s) 33, 119, 213, 224, 251, 748
Cfr13I GGNCC 4 cut(s) 169, 274, 583, 925
Cfr42I CCGCGG 1 cut(s) 1052
CseI GACGC 4 cut(s) 92, 149, 469, 500
Csp6I GTAC 4 cut(s) 555, 713, 1075, 1117
CviAII CATG 8 cut(s) 94, 286, 469, 559, 766, 1237, 1250, 1299
CviQI GTAC 4 cut(s) 555, 713, 1075, 1117
DdeI CTNAG 3 cut(s) 57, 452, 890
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 783, 1265
EarI CTCTTC 2 cut(s) 783, 1265
EciI GGCGGA 1 cut(s) 1097
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 4 cut(s) 64, 285, 558, 1032
Eco24I GRGCYC 2 cut(s) 238, 345
Eco47I GGWCC 4 cut(s) 169, 274, 583, 925
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 557, 807
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 2 cut(s) 169, 274
EcoRII CCWGG 2 cut(s) 40, 1331
EcoT14I CCWWGG 4 cut(s) 64, 285, 558, 1032
EcoT38I GRGCYC 2 cut(s) 238, 345
ErhI CCWWGG 4 cut(s) 64, 285, 558, 1032
FaeI CATG 8 cut(s) 97, 289, 472, 562, 769, 1240, 1253, 1302
FaqI GGGAC 2 cut(s) 46, 554
FatI CATG 8 cut(s) 93, 285, 468, 558, 765, 1236, 1249, 1298
FauI CCCGC 3 cut(s) 254, 544, 1044
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 9 cut(s) 101, 104, 252, 282, 393, 402, 1049, 1169, 1254
FokI GGATG 3 cut(s) 299, 647, 1097
FriOI GRGCYC 2 cut(s) 238, 345
Fsp4HI GCNGC 9 cut(s) 101, 104, 252, 282, 393, 402, 1049, 1169, 1254
FspBI CTAG 4 cut(s) 65, 149, 410, 843
GlaI GCGC 6 cut(s) 32, 118, 212, 223, 250, 747
GluI GCNGC 9 cut(s) 101, 104, 252, 282, 393, 402, 1049, 1169, 1254
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 1166
HaeII RGCGCY 2 cut(s) 214, 749
HaeIII GGCC 4 cut(s) 40, 290, 1001, 1235
HgaI GACGC 4 cut(s) 92, 149, 469, 500
HhaI GCGC 6 cut(s) 33, 119, 213, 224, 251, 748
Hin1I GRCGYC 4 cut(s) 84, 141, 492, 567
Hin1II CATG 8 cut(s) 97, 289, 472, 562, 769, 1240, 1253, 1302
Hin6I GCGC 6 cut(s) 31, 117, 211, 222, 249, 746
HinP1I GCGC 6 cut(s) 31, 117, 211, 222, 249, 746
HincII GTYRAC 2 cut(s) 448, 490
HindII GTYRAC 2 cut(s) 448, 490
HinfI GANTC 5 cut(s) 200, 258, 384, 523, 820
HphI GGTGA 4 cut(s) 208, 301, 379, 752
Hpy166II GTNNAC 5 cut(s) 112, 439, 448, 490, 949
Hpy188I TCNGA 9 cut(s) 51, 233, 263, 383, 787, 819, 906, 1131, 1225
Hpy188III TCNNGA 3 cut(s) 410, 509, 633
Hpy8I GTNNAC 5 cut(s) 112, 439, 448, 490, 949
Hpy99I CGWCG 6 cut(s) 86, 143, 338, 494, 889, 934
HpyAV CCTTC 4 cut(s) 361, 416, 1012, 1225
HpyCH4III ACNGT 3 cut(s) 369, 515, 547
HpyCH4IV ACGT 2 cut(s) 567, 1107
HpyCH4V TGCA 8 cut(s) 93, 401, 468, 472, 626, 1158, 1168, 1253
HpyF3I CTNAG 3 cut(s) 57, 452, 890
HpySE526I ACGT 2 cut(s) 567, 1107
Hsp92I GRCGYC 4 cut(s) 84, 141, 492, 567
Hsp92II CATG 8 cut(s) 97, 289, 472, 562, 769, 1240, 1253, 1302
HspAI GCGC 6 cut(s) 31, 117, 211, 222, 249, 746
KpnI GGTACC 1 cut(s) 558
KspI CCGCGG 1 cut(s) 1052
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 97, 1147
Lsp1109I GCAGC 6 cut(s) 90, 112, 263, 413, 1180, 1265
LweI GCATC 3 cut(s) 759, 1204, 1326
MaeI CTAG 4 cut(s) 65, 149, 410, 843
MaeII ACGT 2 cut(s) 567, 1107
MaeIII GTNAC 1 cut(s) 671
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 8 cut(s) 800, 965, 1108, 1223, 1282, 1289, 1292, 1295
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 238, 345
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 4 cut(s) 619, 718, 757, 1006
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 194, 532
MmeI TCCRAC 4 cut(s) 74, 228, 724, 1073
Mox20I TGGCCA 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 1198
MscI TGGCCA 1 cut(s) 290
MseI TTAA 2 cut(s) 618, 1345
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 3 cut(s) 103, 1051, 1256
MspR9I CCNGG 2 cut(s) 42, 1333
Mva1269I GAATGC 1 cut(s) 1179
MvaI CCWGG 2 cut(s) 42, 1333
MvnI CGCG 5 cut(s) 31, 224, 249, 711, 1051
NcoI CCATGG 2 cut(s) 285, 558
NdeII GATC 1 cut(s) 159
NlaIII CATG 8 cut(s) 97, 289, 472, 562, 769, 1240, 1253, 1302
NlaIV GGNNCC 4 cut(s) 170, 556, 607, 927
NspI RCATGY 2 cut(s) 472, 1253
NspV TTCGAA 1 cut(s) 1192
PaeI GCATGC 1 cut(s) 472
PaqCI CACCTGC 2 cut(s) 227, 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 1179
PdmI GAANNNNTTC 1 cut(s) 1198
PfeI GAWTC 3 cut(s) 258, 384, 820
Pfl23II CGTACG 1 cut(s) 1116
PflMI CCANNNNNTGG 1 cut(s) 1332
PkrI GCNGC 9 cut(s) 102, 105, 253, 283, 394, 403, 1050, 1170, 1255
PleI GAGTC 2 cut(s) 194, 531
PpsI GAGTC 2 cut(s) 194, 531
PpuMI RGGWCCY 2 cut(s) 169, 274
Psp124BI GAGCTC 1 cut(s) 345
Psp5II RGGWCCY 2 cut(s) 169, 274
Psp6I CCWGG 2 cut(s) 40, 1331
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 2 cut(s) 40, 1331
PspLI CGTACG 1 cut(s) 1116
PspN4I GGNNCC 4 cut(s) 170, 556, 607, 927
PspPI GGNCC 4 cut(s) 169, 274, 583, 925
PspPPI RGGWCCY 2 cut(s) 169, 274
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 2 cut(s) 103, 1256
RsaI GTAC 4 cut(s) 556, 714, 1076, 1118
RsaNI GTAC 4 cut(s) 555, 713, 1075, 1117
SacI GAGCTC 1 cut(s) 345
SacII CCGCGG 1 cut(s) 1052
SalI GTCGAC 1 cut(s) 488
SaqAI TTAA 2 cut(s) 618, 1345
SatI GCNGC 9 cut(s) 101, 104, 252, 282, 393, 402, 1049, 1169, 1254
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 4 cut(s) 169, 274, 583, 925
SchI GAGTC 2 cut(s) 194, 532
ScrFI CCNGG 2 cut(s) 42, 1333
SduI GDGCHC 2 cut(s) 238, 345
SfaNI GCATC 3 cut(s) 759, 1204, 1326
SfcI CTRYAG 1 cut(s) 432
Sfr303I CCGCGG 1 cut(s) 1052
SfuI TTCGAA 1 cut(s) 1192
SgrBI CCGCGG 1 cut(s) 1052
SinI GGWCC 4 cut(s) 169, 274, 583, 925
SphI GCATGC 1 cut(s) 472
Sse9I AATT 4 cut(s) 619, 718, 757, 1006
SspMI CTAG 4 cut(s) 65, 149, 410, 843
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 40, 1331
StyI CCWWGG 4 cut(s) 64, 285, 558, 1032
TaaI ACNGT 3 cut(s) 369, 515, 547
TaiI ACGT 2 cut(s) 570, 1110
TaqI TCGA 6 cut(s) 129, 357, 489, 839, 971, 1192
TasI AATT 4 cut(s) 619, 718, 757, 1006
TauI GCSGC 3 cut(s) 284, 395, 1051
TfiI GAWTC 3 cut(s) 258, 384, 820
Tru1I TTAA 2 cut(s) 618, 1345
Tru9I TTAA 2 cut(s) 618, 1345
TscAI CASTG 6 cut(s) 119, 470, 550, 682, 987, 1076
TseI GCWGC 6 cut(s) 100, 103, 251, 401, 1168, 1253
TspDTI ATGAA 4 cut(s) 20, 343, 1191, 1260
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 6 cut(s) 119, 470, 550, 682, 987, 1076
Van91I CCANNNNNTGG 1 cut(s) 1332
VpaK11BI GGWCC 4 cut(s) 169, 274, 583, 925
XapI RAATTY 1 cut(s) 718
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 2 cut(s) 472, 1253
XmaJI CCTAGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 1198
XspI CTAG 4 cut(s) 65, 149, 410, 843
ZraI GACGTC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.