Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014207

Physical Location & Seq

Genomic Coordinates Reverse (-)

27488933 .. 27489988

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1294400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCAACTCCCAAGCCAACTTCACCATCCACACTCACAAGTTCTCCATCGTTGAGCTCGCCTCCTTCATCGACCTGACACCGTGGCACAGGTTCGGATTCACCGCCACAAATGCAGCCATTGTAGAAGCTGTTGAAGGGTATTCTGTGGTTCACATTGTTGACCTGAGCTTGACGCATTGCATGCAAATCCCAACTCTGGTTGACGCCATTGCCAGCCGTCAGGACGGTAATGTGAGTCCTCCGTTGCTGAAGCTCACTGTGGCGGGTACCATGGAGGACGTCCCTCCAATGCTGGACCTGTCATACGAGGAACTGGGTTCCAAGTTGGTTAATTTCGCAAGGTCAAGAAACATCATTTTAGAGTTTAGGGTCATCCCGTCAAGTTACACTGATGGGTTTGCCAACCTAATCCAACAACTCCGCGTACAAAATTTAGTGTATGCGGAGAGTGGTGAGGCGCTTGTAGTGAATTGCCACATGATGCTTCACTACATTTCTGAAGAGGCATTGACACTTCCGGCAATCAATCCGAATCCTAGCAGTAGTGGTTCGACTAGCTCTTACGCTTTTGATGTAGCTTCGTCCTCTTCAAGTTCGTCGCTAAGGACAGTGTTTCTGAAAGTGCTTGGGGGTTTGGACCCGACGATTGTGGTTTTGGTGAACGAAGATGTGGATTTGACATCGAATAATCTAGTGTGTAGGTTGAGGTCGGCCTTCAATTACCTGTGGATACCTTATGACACCGTGGACACATTTTTGCCGCGGGGAAGCAAGCAGAGGCAGTGGTACGAGGCGGATGTGTGTTGGAAGATTGAGAACGTGATAGCGTACGAGGGCTTTCAGAGGGTGGAGAGGCTGGAGCCGAAATGCAGGTGGGTGCAGCGAATGCGAAATGCCAACTTTCGAAGCGTTTCATTTGGGAAAGATGCGGTTTCGGAAGTGAAGGCCATGCTTGATGAACATGGTTGGGGATTGAAGAGAGAAGAAGAAGATGTTGTGCTTACACTGAAAGGACACAATGTTGTGTTTGCCACAGCTTGGATGCCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

352

Amino Acids

39.24

Weight (kDa)

5.41

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	13 - 348	1.6e-68	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49950
fragaria_vesca	FvH4_1g17370
malus_domestica	MD00G1112400.v1.1 MD15G1294400.v1.1 MD15G1294600.v1.1
prunus_persica	Prupe.6G223200_v2.0.a1
pyrus_communis	pycom02g14830
rosa_chinensis	RchiOBHm_Chr2g0107531
rosa_laevigata	RLG00000017589
rosa_multiflora	Rmu_co8494603.1_g000001 Rmu_sc0001065.1_g000018
rosa_rugosa	Rorug02G0144800
rosa_samantha	Rh2AG194600 Rh2BG207300 Rh2CG199800 Rh2DG201900
rosa_wichuraiana	Rw2G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	864
AatII	GACGTC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	864
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	1041
AccII	CGCG	2 cut(s)	426, 766
AciI	CCGC	8 cut(s)	105, 266, 424, 446, 764, 766, 797, 932
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	272, 522
AcyI	GRCGYC	2 cut(s)	207, 282
AfaI	GTAC	4 cut(s)	271, 429, 791, 833
AfiI	CCNNNNNNNGG	2 cut(s)	199, 1041
AgsI	TTSAA	4 cut(s)	137, 594, 721, 979
AluBI	AGCT	7 cut(s)	58, 131, 171, 256, 561, 581, 1040
AluI	AGCT	7 cut(s)	58, 131, 171, 256, 561, 581, 1040
Alw21I	GWGCWC	1 cut(s)	60
AoxI	GGCC	3 cut(s)	3, 714, 948
ApeKI	GCWGC	2 cut(s)	116, 883
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	913
Asp718I	GGTACC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	298, 640
AsuHPI	GGTGA	4 cut(s)	16, 94, 467, 673
AsuII	TTCGAA	1 cut(s)	907
AvaII	GGWCC	2 cut(s)	298, 640
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	128, 895
BccI	CCATC	3 cut(s)	35, 56, 389
BceAI	ACGGC	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	726
BfaI	CTAG	3 cut(s)	540, 558, 695
BfoI	RGCGCY	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	864
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	3 cut(s)	117, 764, 884
BlsI	GCNGC	3 cut(s)	118, 765, 885
Bme18I	GGWCC	2 cut(s)	298, 640
BmgT120I	GGNCC	2 cut(s)	298, 640
BmiI	GGNNCC	4 cut(s)	271, 322, 642, 864
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	3 cut(s)	474, 919, 1035
BmuI	ACTGGG	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	881
Bpu10I	CCTNAGC	2 cut(s)	167, 605
Bpu14I	TTCGAA	1 cut(s)	907
BsaHI	GRCGYC	2 cut(s)	207, 282
BsaJI	CCNNGG	4 cut(s)	83, 273, 747, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 1041
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	2 cut(s)	178, 210
BseDI	CCNNGG	4 cut(s)	83, 273, 747, 764
BseGI	GGATG	4 cut(s)	27, 375, 805, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	199, 1041
BseMI	GCAATG	2 cut(s)	178, 210
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	128, 895
BsgI	GTGCAG	1 cut(s)	902
Bsh1236I	CGCG	2 cut(s)	426, 766
BshFI	GGCC	3 cut(s)	5, 716, 950
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	521
BsiWI	CGTACG	1 cut(s)	831
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	199, 1041
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	894
BsnI	GGCC	3 cut(s)	5, 716, 950
Bsp119I	TTCGAA	1 cut(s)	907
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	8 cut(s)	105, 266, 424, 446, 764, 766, 797, 932
BspANI	GGCC	3 cut(s)	5, 716, 950
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	2 cut(s)	426, 766
BspLI	GGNNCC	4 cut(s)	271, 322, 642, 864
BspMI	ACCTGC	1 cut(s)	864
BspT104I	TTCGAA	1 cut(s)	907
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	178, 210
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	4 cut(s)	83, 273, 747, 764
BssNI	GRCGYC	2 cut(s)	207, 282
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	5 cut(s)	84, 230, 262, 613, 748
Bst6I	CTCTTC	3 cut(s)	498, 595, 974
BstACI	GRCGYC	2 cut(s)	207, 282
BstAPI	GCANNNNNTGC	2 cut(s)	184, 889
BstBI	TTCGAA	1 cut(s)	907
BstC8I	GCNNGC	5 cut(s)	60, 185, 217, 776, 1050
BstDEI	CTNAG	2 cut(s)	167, 605
BstDSI	CCRYGG	4 cut(s)	83, 273, 747, 764
BstF5I	GGATG	4 cut(s)	27, 375, 805, 1050
BstFNI	CGCG	2 cut(s)	426, 766
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 184, 889
BstNSI	RCATGY	1 cut(s)	187
BstUI	CGCG	2 cut(s)	426, 766
BstV1I	GCAGC	2 cut(s)	128, 895
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	5, 716, 950
BtgI	CCRYGG	4 cut(s)	83, 273, 747, 764
BtsCI	GGATG	4 cut(s)	27, 375, 805, 1050
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	5 cut(s)	258, 390, 618, 791, 1007
BveI	ACCTGC	1 cut(s)	864
Cac8I	GCNNGC	5 cut(s)	60, 185, 217, 776, 1050
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	298, 640
Cfr42I	CCGCGG	1 cut(s)	767
CseI	GACGC	2 cut(s)	184, 215
Csp6I	GTAC	4 cut(s)	270, 428, 790, 832
CviAII	CATG	5 cut(s)	184, 274, 481, 952, 965
CviQI	GTAC	4 cut(s)	270, 428, 790, 832
DdeI	CTNAG	2 cut(s)	167, 605
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	498, 595, 974
EarI	CTCTTC	3 cut(s)	498, 595, 974
EciI	GGCGGA	1 cut(s)	812
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	298, 640
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	272, 522
EcoICRI	GAGCTC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	5 cut(s)	187, 277, 484, 955, 968
FaiI	YATR	8 cut(s)	185, 275, 307, 444, 482, 741, 953, 966
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	5 cut(s)	183, 273, 480, 951, 964
FauI	CCCGC	2 cut(s)	259, 759
Fnu4HI	GCNGC	3 cut(s)	117, 764, 884
FokI	GGATG	3 cut(s)	14, 362, 812
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	117, 764, 884
FspBI	CTAG	3 cut(s)	540, 558, 695
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	3 cut(s)	117, 764, 884
GsuI	CTGGAG	1 cut(s)	881
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	3 cut(s)	5, 716, 950
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	2 cut(s)	184, 215
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	2 cut(s)	207, 282
Hin1II	CATG	5 cut(s)	187, 277, 484, 955, 968
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HincII	GTYRAC	2 cut(s)	163, 205
HindII	GTYRAC	2 cut(s)	163, 205
HinfI	GANTC	3 cut(s)	99, 238, 535
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	4 cut(s)	16, 94, 467, 673
Hpy166II	GTNNAC	5 cut(s)	154, 163, 205, 664, 751
Hpy188I	TCNGA	6 cut(s)	98, 502, 534, 621, 846, 940
Hpy188III	TCNNGA	2 cut(s)	224, 348
Hpy8I	GTNNAC	5 cut(s)	154, 163, 205, 664, 751
Hpy99I	CGWCG	2 cut(s)	604, 649
HpyAV	CCTTC	4 cut(s)	76, 131, 727, 940
HpyCH4III	ACNGT	5 cut(s)	84, 230, 262, 613, 748
HpyCH4IV	ACGT	2 cut(s)	282, 822
HpyCH4V	TGCA	5 cut(s)	116, 183, 187, 873, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 184, 889
HpyF3I	CTNAG	2 cut(s)	167, 605
HpySE526I	ACGT	2 cut(s)	282, 822
Hsp92I	GRCGYC	2 cut(s)	207, 282
Hsp92II	CATG	5 cut(s)	187, 277, 484, 955, 968
HspAI	GCGC	1 cut(s)	461
KpnI	GGTACC	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	767
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	2 cut(s)	128, 895
LweI	GCATC	3 cut(s)	474, 919, 1035
MaeI	CTAG	3 cut(s)	540, 558, 695
MaeII	ACGT	2 cut(s)	282, 822
MaeIII	GTNAC	1 cut(s)	386
MboII	GAAGA	8 cut(s)	515, 582, 680, 823, 991, 998, 1001, 1004
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	334, 433, 472, 721
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	2 cut(s)	439, 788
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	913
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	333, 1054
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	894
MvnI	CGCG	2 cut(s)	426, 766
MwoI	GCNNNNNNNGC	3 cut(s)	113, 184, 889
NcoI	CCATGG	1 cut(s)	273
NlaIII	CATG	5 cut(s)	187, 277, 484, 955, 968
NlaIV	GGNNCC	4 cut(s)	271, 322, 642, 864
NspI	RCATGY	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	907
PaeI	GCATGC	1 cut(s)	187
PaqCI	CACCTGC	1 cut(s)	864
PctI	GAATGC	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	913
PfeI	GAWTC	2 cut(s)	99, 535
Pfl23II	CGTACG	1 cut(s)	831
PflMI	CCANNNNNTGG	1 cut(s)	1041
PkrI	GCNGC	3 cut(s)	118, 765, 885
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	60
PspLI	CGTACG	1 cut(s)	831
PspN4I	GGNNCC	4 cut(s)	271, 322, 642, 864
PspPI	GGNCC	2 cut(s)	298, 640
RsaI	GTAC	4 cut(s)	271, 429, 791, 833
RsaNI	GTAC	4 cut(s)	270, 428, 790, 832
SacI	GAGCTC	1 cut(s)	60
SacII	CCGCGG	1 cut(s)	767
SaqAI	TTAA	2 cut(s)	333, 1054
SatI	GCNGC	3 cut(s)	117, 764, 884
Sau96I	GGNCC	2 cut(s)	298, 640
SchI	GAGTC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	3 cut(s)	474, 919, 1035
Sfr303I	CCGCGG	1 cut(s)	767
SfuI	TTCGAA	1 cut(s)	907
SgrBI	CCGCGG	1 cut(s)	767
SinI	GGWCC	2 cut(s)	298, 640
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	4 cut(s)	334, 433, 472, 721
SsiI	CCGC	8 cut(s)	105, 266, 424, 446, 764, 766, 797, 932
SspMI	CTAG	3 cut(s)	540, 558, 695
SstI	GAGCTC	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	5 cut(s)	84, 230, 262, 613, 748
TaiI	ACGT	2 cut(s)	285, 825
TaqI	TCGA	4 cut(s)	72, 554, 686, 907
TasI	AATT	4 cut(s)	334, 433, 472, 721
TauI	GCSGC	1 cut(s)	766
TfiI	GAWTC	2 cut(s)	99, 535
Tru1I	TTAA	2 cut(s)	333, 1054
Tru9I	TTAA	2 cut(s)	333, 1054
TscAI	CASTG	5 cut(s)	265, 397, 618, 791, 1014
TseI	GCWGC	2 cut(s)	116, 883
TspDTI	ATGAA	3 cut(s)	58, 906, 975
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	5 cut(s)	265, 397, 618, 791, 1014
Van91I	CCANNNNNTGG	1 cut(s)	1041
VpaK11BI	GGWCC	2 cut(s)	298, 640
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	913
XspI	CTAG	3 cut(s)	540, 558, 695
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.