Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020831

Physical Location & Seq

Genomic Coordinates Forward (+)

18534450 .. 18537073

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCACCTAATCTTCTTCTTCTCCTACTTTCTTCGACGGTACCTGTTGTTATTGTGCGCCATCTTGATCTTACGTGCGCCGTTGGCGCATTCTCTTATACCACCATTAACGTGCGTCAACACCGGAACCGTTGAATCAGACGTTACTGGTATCAGGTTCGATCGTTGCCTCGATACCGATTCTCTCGCCAAGATCTCTCTTTCCACCGTCATGTCGAAAGCTCGTGTTTATACCGATGTTAACGTGATCCGACCTAAGGATTATTGGGATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAGGAAGGTGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAACAATGAGAAGTGTATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTAGAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGGCCAAATATTGTAAAGCTGCTTGATGTTGTCAGAGATCAACACTCAAAAACGCCAAGCTTGATATTTGAGTATGTAAACAGCACAGACTTTAAGGTTCTGTATCCAACATTGACTGATTATGACATTCGCTACTACATCTATGAGCTGTTGAAGGCTTTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTCATGATCGACCATGAGCTGCGCAAACTTCGCCTAATAGATTGGGGTCTCGCTGAGTTTTATCATCCTGGAAAAGAGTACAACGTCCGTGTGGCCTCAAGATACTTCAAAGGTCCCGAACTTCTAGTTGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTCGGTTGCATGTTTGCTGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTCGTCAAAATTGCCAAGGTACTCGGAACTGATGAATTGAATGCATATCTGAATAAGTATCAGTTAGAACTTGATACTCAACTAGAGGCACTTGTTGGGAGACATAGCAGGAAGCCTTGGTCCAAATTCATCAACGCTGACAATAGGCATTTGGTCTCACCTGAGGCGATTGATTATTTGGACAAGCTGCTCCGGTATGATCATCAAGACAGATTAACTGCAAAAGAAGCAATGGCTCATCCCTATTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGAATGAGGACTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010225 GO:0010332 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048511 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

403

Amino Acids

47.23

Weight (kDa)

8.46

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	104 - 389	9e-63	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 306	4.4e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50000 AT5G67380 AT5G67380
rosa_laevigata	RLG00000029453
rosa_multiflora	Rmu_co8014206.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	39
AciI	CCGC	1 cut(s)	877
AclWI	GGATC	2 cut(s)	241, 921
AcoI	YGGCCR	1 cut(s)	898
AcsI	RAATTY	1 cut(s)	1043
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	41, 758, 939
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	4 cut(s)	134, 619, 787, 958
AjnI	CCWGG	2 cut(s)	745, 909
AluBI	AGCT	7 cut(s)	221, 484, 525, 613, 697, 919, 1105
AluI	AGCT	7 cut(s)	221, 484, 525, 613, 697, 919, 1105
Alw26I	GTCTC	3 cut(s)	731, 1012, 1078
AlwI	GGATC	2 cut(s)	241, 921
AoxI	GGCC	3 cut(s)	467, 771, 898
ApeKI	GCWGC	5 cut(s)	484, 697, 1105, 1181, 1191
ApoI	RAATTY	1 cut(s)	1043
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	4 cut(s)	59, 79, 88, 702
AspS9I	GGNCC	3 cut(s)	467, 791, 1038
AsuHPI	GGTGA	1 cut(s)	1068
AvaII	GGWCC	2 cut(s)	791, 1038
AxyI	CCTNAGG	2 cut(s)	255, 1080
BalI	TGGCCA	1 cut(s)	900
BanI	GGYRCC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	222
BbvI	GCAGC	5 cut(s)	471, 684, 1092, 1193, 1203
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	747, 911
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	1117
BcoDI	GTCTC	3 cut(s)	731, 1012, 1078
BfaI	CTAG	2 cut(s)	803, 1001
BfuI	GTATCC	1 cut(s)	579
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	5 cut(s)	485, 698, 1106, 1182, 1192
BlsI	GCNGC	5 cut(s)	486, 699, 1107, 1183, 1193
Bme1390I	CCNGG	2 cut(s)	747, 911
Bme18I	GGWCC	2 cut(s)	791, 1038
BmgT120I	GGNCC	3 cut(s)	467, 791, 1038
BmiI	GGNNCC	5 cut(s)	41, 127, 793, 845, 885
BmrFI	CCNGG	2 cut(s)	747, 911
BpuEI	CTTGAG	3 cut(s)	389, 760, 1155
BsaAI	YACGTR	1 cut(s)	74
BsaI	GGTCTC	2 cut(s)	731, 1078
BsaJI	CCNNGG	4 cut(s)	831, 847, 933, 1034
BsaWI	WCCGGW	2 cut(s)	122, 1110
BsaXI	ACNNNNNCTCC	2 cut(s)	835, 865
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	151
Bse21I	CCTNAGG	2 cut(s)	255, 1080
Bse3DI	GCAATG	1 cut(s)	1155
BseBI	CCWGG	2 cut(s)	747, 911
BseDI	CCNNGG	4 cut(s)	831, 847, 933, 1034
BseGI	GGATG	3 cut(s)	742, 873, 1156
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	1155
BseMII	CTCAG	2 cut(s)	723, 1071
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	5 cut(s)	471, 684, 1092, 1193, 1203
BseYI	CCCAGC	1 cut(s)	863
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	469, 773, 900
BshNI	GGYRCC	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	123, 1111
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	3 cut(s)	731, 1012, 1078
BsmFI	GGGAC	1 cut(s)	777
BsmI	GAATGC	2 cut(s)	88, 964
BsnI	GGCC	3 cut(s)	469, 773, 900
Bso31I	GGTCTC	2 cut(s)	731, 1078
Bsp143I	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
BspACI	CCGC	1 cut(s)	877
BspANI	GGCC	3 cut(s)	469, 773, 900
BspCNI	CTCAG	2 cut(s)	724, 1072
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	5 cut(s)	41, 127, 793, 845, 885
BspPI	GGATC	2 cut(s)	241, 921
BspT107I	GGYRCC	1 cut(s)	39
BspTNI	GGTCTC	2 cut(s)	731, 1078
BsrDI	GCAATG	1 cut(s)	1155
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	4 cut(s)	831, 847, 933, 1034
BssMI	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
BssSI	CACGAG	1 cut(s)	222
BssT1I	CCWWGG	3 cut(s)	831, 933, 1034
Bst2BI	CACGAG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	747, 911
Bst4CI	ACNGT	4 cut(s)	39, 130, 208, 347
BstBAI	YACGTR	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	255, 732, 1080
BstF5I	GGATG	3 cut(s)	742, 873, 1156
BstHHI	GCGC	4 cut(s)	59, 79, 88, 702
BstKTI	GATC	8 cut(s)	69, 163, 195, 249, 505, 687, 916, 1120
BstMAI	GTCTC	3 cut(s)	731, 1012, 1078
BstMBI	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 85, 708, 852, 1145
BstNI	CCWGG	2 cut(s)	747, 911
BstNSI	RCATGY	2 cut(s)	841, 859
BstSCI	CCNGG	2 cut(s)	745, 909
BstV1I	GCAGC	5 cut(s)	471, 684, 1092, 1193, 1203
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
Bsu36I	CCTNAGG	2 cut(s)	255, 1080
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	3 cut(s)	469, 773, 900
BtsCI	GGATG	3 cut(s)	742, 873, 1156
BtsIMutI	CAGTG	2 cut(s)	296, 352
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	4 cut(s)	59, 79, 88, 702
Cfr13I	GGNCC	3 cut(s)	467, 791, 1038
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	3 cut(s)	40, 757, 938
CviAII	CATG	7 cut(s)	211, 370, 682, 692, 838, 856, 902
CviQI	GTAC	3 cut(s)	40, 757, 938
DdeI	CTNAG	3 cut(s)	255, 732, 1080
DpnI	GATC	8 cut(s)	68, 162, 194, 248, 504, 686, 915, 1119
DpnII	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
EaeI	YGGCCR	1 cut(s)	898
Eco130I	CCWWGG	3 cut(s)	831, 933, 1034
Eco31I	GGTCTC	2 cut(s)	731, 1078
Eco47I	GGWCC	2 cut(s)	791, 1038
Eco57I	CTGAAG	1 cut(s)	434
Eco81I	CCTNAGG	2 cut(s)	255, 1080
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRII	CCWGG	2 cut(s)	745, 909
EcoT14I	CCWWGG	3 cut(s)	831, 933, 1034
EcoT22I	ATGCAT	1 cut(s)	964
ErhI	CCWWGG	3 cut(s)	831, 933, 1034
FaeI	CATG	7 cut(s)	214, 373, 685, 695, 841, 859, 905
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	7 cut(s)	210, 369, 681, 691, 837, 855, 901
FbaI	TGATCA	1 cut(s)	1117
Fnu4HI	GCNGC	5 cut(s)	485, 698, 1106, 1182, 1192
FokI	GGATG	3 cut(s)	729, 880, 1143
Fsp4HI	GCNGC	5 cut(s)	485, 698, 1106, 1182, 1192
FspBI	CTAG	2 cut(s)	803, 1001
FspI	TGCGCA	1 cut(s)	701
GlaI	GCGC	4 cut(s)	58, 78, 87, 701
GluI	GCNGC	5 cut(s)	485, 698, 1106, 1182, 1192
GsaI	CCCAGC	1 cut(s)	867
HaeIII	GGCC	3 cut(s)	469, 773, 900
HapII	CCGG	2 cut(s)	123, 1111
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	4 cut(s)	59, 79, 88, 702
Hin1II	CATG	7 cut(s)	214, 373, 685, 695, 841, 859, 905
Hin6I	GCGC	4 cut(s)	57, 77, 86, 700
HinP1I	GCGC	4 cut(s)	57, 77, 86, 700
HincII	GTYRAC	2 cut(s)	118, 241
HindII	GTYRAC	2 cut(s)	118, 241
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	6 cut(s)	134, 179, 275, 400, 454, 1204
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	123, 1111
HphI	GGTGA	1 cut(s)	1068
Hpy166II	GTNNAC	3 cut(s)	118, 241, 544
Hpy188I	TCNGA	6 cut(s)	139, 251, 453, 500, 944, 969
Hpy188III	TCNNGA	6 cut(s)	64, 397, 682, 777, 794, 1124
Hpy8I	GTNNAC	3 cut(s)	118, 241, 544
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	319, 426, 613
HpyCH4III	ACNGT	4 cut(s)	39, 130, 208, 347
HpyCH4IV	ACGT	5 cut(s)	73, 110, 141, 243, 762
HpyCH4V	TGCA	5 cut(s)	4, 655, 855, 962, 1139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 85, 708, 852, 1145
HpyF3I	CTNAG	3 cut(s)	255, 732, 1080
HpySE526I	ACGT	5 cut(s)	73, 110, 141, 243, 762
Hsp92II	CATG	7 cut(s)	214, 373, 685, 695, 841, 859, 905
HspAI	GCGC	4 cut(s)	57, 77, 86, 700
KpnI	GGTACC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	1117
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
LmnI	GCTCC	3 cut(s)	298, 843, 1113
Lsp1109I	GCAGC	5 cut(s)	471, 684, 1092, 1193, 1203
MaeI	CTAG	2 cut(s)	803, 1001
MaeII	ACGT	5 cut(s)	73, 110, 141, 243, 762
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	8 cut(s)	68, 162, 194, 248, 504, 686, 915, 1119
MboI	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
MboII	GAAGA	8 cut(s)	4, 7, 10, 23, 430, 433, 436, 883
MflI	RGATCY	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	900
MluCI	AATT	3 cut(s)	927, 953, 1043
MluNI	TGGCCA	1 cut(s)	900
MlyI	GAGTC	1 cut(s)	1198
MmeI	TCCRAC	2 cut(s)	274, 596
Mox20I	TGGCCA	1 cut(s)	900
Mph1103I	ATGCAT	1 cut(s)	964
MscI	TGGCCA	1 cut(s)	900
MseI	TTAA	7 cut(s)	107, 240, 366, 414, 441, 558, 1133
MslI	CAYNNNNRTG	3 cut(s)	109, 209, 660
Msp20I	TGGCCA	1 cut(s)	900
MspI	CCGG	2 cut(s)	123, 1111
MspR9I	CCNGG	2 cut(s)	747, 911
Mva1269I	GAATGC	2 cut(s)	88, 964
MvaI	CCWGG	2 cut(s)	747, 911
MwoI	GCNNNNNNNGC	5 cut(s)	83, 85, 708, 852, 1145
NdeII	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
NlaIII	CATG	7 cut(s)	214, 373, 685, 695, 841, 859, 905
NlaIV	GGNNCC	5 cut(s)	41, 127, 793, 845, 885
NsbI	TGCGCA	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	964
NspI	RCATGY	2 cut(s)	841, 859
PagI	TCATGA	1 cut(s)	681
PciI	ACATGT	1 cut(s)	837
PctI	GAATGC	2 cut(s)	88, 964
PfeI	GAWTC	5 cut(s)	134, 179, 275, 400, 454
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	5 cut(s)	486, 699, 1107, 1183, 1193
Ple19I	CGATCG	1 cut(s)	163
PleI	GAGTC	1 cut(s)	1198
PpsI	GAGTC	1 cut(s)	1198
Ppu21I	YACGTR	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	791
PscI	ACATGT	1 cut(s)	837
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	745, 909
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	2 cut(s)	745, 909
PspN4I	GGNNCC	5 cut(s)	41, 127, 793, 845, 885
PspPI	GGNCC	3 cut(s)	467, 791, 1038
PspPPI	RGGWCCY	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	163
RsaI	GTAC	3 cut(s)	41, 758, 939
RsaNI	GTAC	3 cut(s)	40, 757, 938
RseI	CAYNNNNRTG	3 cut(s)	109, 209, 660
SaqAI	TTAA	7 cut(s)	107, 240, 366, 414, 441, 558, 1133
SatI	GCNGC	5 cut(s)	485, 698, 1106, 1182, 1192
Sau3AI	GATC	8 cut(s)	66, 160, 192, 246, 502, 684, 913, 1117
Sau96I	GGNCC	3 cut(s)	467, 791, 1038
SchI	GAGTC	1 cut(s)	1198
ScrFI	CCNGG	2 cut(s)	747, 911
SinI	GGWCC	2 cut(s)	791, 1038
SmiMI	CAYNNNNRTG	3 cut(s)	109, 209, 660
SmlI	CTYRAG	3 cut(s)	404, 775, 1170
SmoI	CTYRAG	3 cut(s)	404, 775, 1170
Sse9I	AATT	3 cut(s)	927, 953, 1043
SsiI	CCGC	1 cut(s)	877
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	803, 1001
StyD4I	CCNGG	2 cut(s)	745, 909
StyI	CCWWGG	3 cut(s)	831, 933, 1034
TaaI	ACNGT	4 cut(s)	39, 130, 208, 347
TaiI	ACGT	5 cut(s)	76, 113, 144, 246, 765
TaqI	TCGA	5 cut(s)	34, 159, 171, 215, 687
TasI	AATT	3 cut(s)	927, 953, 1043
TatI	WGTACW	1 cut(s)	756
TfiI	GAWTC	5 cut(s)	134, 179, 275, 400, 454
Tru1I	TTAA	7 cut(s)	107, 240, 366, 414, 441, 558, 1133
Tru9I	TTAA	7 cut(s)	107, 240, 366, 414, 441, 558, 1133
TscAI	CASTG	2 cut(s)	296, 352
TseI	GCWGC	5 cut(s)	484, 697, 1105, 1181, 1191
TspDTI	ATGAA	3 cut(s)	386, 966, 1036
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	2 cut(s)	296, 352
VpaK11BI	GGWCC	2 cut(s)	791, 1038
XapI	RAATTY	1 cut(s)	1043
XceI	RCATGY	2 cut(s)	841, 859
XspI	CTAG	2 cut(s)	803, 1001
Zsp2I	ATGCAT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.