Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0020831

Physical Location & Seq

Genomic Coordinates Reverse (-)

38951199 .. 38951932

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAAAATAATGGTTCCACGCTGCACAACAACGTTTTCCCTCCTCAATTTTCAGATTCCCTCCTCATCGAATTTTTGGATTCCCTGTTCACCTTTATCGAACTCCCTCTTGGCTTGCTCATTACAACAGAACAAAAAAAACAAATTGGTTTCCTCTCCTTTTACCCAAGCCCACTCAGATCTCGCATCCCAATCTCGCAGCCATGTCCAAAGCTCACGTCTACGCCGACATCAATGTCCTCCGCCCCAAGGAGTACTGGGACTACGAGTCCTTCACCGTCCAATGGGGGTGATCAAGATGATTGTGAGGTTGCGAGGAAAGTAGGGGGAGGAAAATACAACAAGGTCTTTGAAGGTATTAATCTCAATACCAATGAGAAATGCATAATTAAAATCCTCAAGCCTGTGAAGAAGAAGATGATTAAGAGGGAGATTAAGATTCTGCAAAACCTTTGTGAGGAGTCCGAATGCAGTCAAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

162

Amino Acids

17.77

Weight (kDa)

8.6

Isoelectric Point (pI)

71.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50000 AT5G67380 AT5G67380
rosa_laevigata	RLG00000029453
rosa_multiflora	Rmu_co8014206.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	1 cut(s)	243
AclI	AACGTT	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	3 cut(s)	249, 284, 457
AgsI	TTSAA	1 cut(s)	353
AhdI	GACNNNNNGTC	1 cut(s)	267
AjiI	CACGTC	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	2 cut(s)	214, 479
AluI	AGCT	2 cut(s)	214, 479
ApeKI	GCWGC	2 cut(s)	22, 199
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AseI	ATTAAT	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	82, 267, 302
BbvI	GCAGC	2 cut(s)	9, 211
BclI	TGATCA	1 cut(s)	292
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	2 cut(s)	23, 200
BlsI	GCNGC	2 cut(s)	24, 201
BmcAI	AGTACT	1 cut(s)	256
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmgBI	CACGTC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 284, 457
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	3 cut(s)	249, 284, 457
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	3 cut(s)	33, 53, 473
BseXI	GCAGC	2 cut(s)	9, 211
BsgI	GTGCAG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	249, 284, 457
BsmFI	GGGAC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	179, 292
BspACI	CCGC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	179, 292
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	2 cut(s)	182, 295
BstMBI	GATC	2 cut(s)	179, 292
BstV1I	GCAGC	2 cut(s)	9, 211
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	6 cut(s)	114, 171, 202, 214, 403, 479
CviKI_1	RGCY	6 cut(s)	114, 171, 202, 214, 403, 479
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	181, 294
DpnII	GATC	2 cut(s)	179, 292
DrdI	GACNNNNNNGTC	1 cut(s)	235
DriI	GACNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	1 cut(s)	235
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	1 cut(s)	207
FaiI	YATR	2 cut(s)	205, 386
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	23, 200
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	23, 200
GluI	GCNGC	2 cut(s)	23, 200
Hin1II	CATG	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	5 cut(s)	56, 80, 268, 439, 461
HphI	GGTGA	3 cut(s)	82, 267, 302
Hpy166II	GTNNAC	2 cut(s)	90, 222
Hpy188I	TCNGA	3 cut(s)	55, 179, 466
Hpy188III	TCNNGA	2 cut(s)	296, 483
Hpy8I	GTNNAC	2 cut(s)	90, 222
HpyAV	CCTTC	2 cut(s)	282, 347
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	2 cut(s)	33, 218
HpyCH4V	TGCA	4 cut(s)	25, 384, 445, 471
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	2 cut(s)	33, 218
Hsp92II	CATG	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	179, 292
LpnPI	CCDG	3 cut(s)	98, 243, 417
Lsp1109I	GCAGC	2 cut(s)	9, 211
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	2 cut(s)	33, 218
MalI	GATC	2 cut(s)	181, 294
MboI	GATC	2 cut(s)	179, 292
MboII	GAAGA	3 cut(s)	421, 424, 427
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	4 cut(s)	47, 71, 144, 387
MlyI	GAGTC	2 cut(s)	277, 470
Mph1103I	ATGCAT	1 cut(s)	386
MseI	TTAA	4 cut(s)	360, 390, 423, 435
Mva1269I	GAATGC	1 cut(s)	473
NdeII	GATC	2 cut(s)	179, 292
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	56, 80, 439
PkrI	GCNGC	2 cut(s)	24, 201
PleI	GAGTC	2 cut(s)	276, 469
PpsI	GAGTC	2 cut(s)	276, 469
PshBI	ATTAAT	1 cut(s)	360
Psp1406I	AACGTT	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	360, 390, 423, 435
SatI	GCNGC	2 cut(s)	23, 200
Sau3AI	GATC	2 cut(s)	179, 292
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	2 cut(s)	277, 470
SetI	ASST	9 cut(s)	36, 95, 216, 221, 312, 348, 358, 453, 481
SfaNI	GCATC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	47, 71, 144, 387
SsiI	CCGC	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	2 cut(s)	36, 221
TaqI	TCGA	2 cut(s)	69, 99
TasI	AATT	4 cut(s)	47, 71, 144, 387
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	56, 80, 439
Tru1I	TTAA	4 cut(s)	360, 390, 423, 435
Tru9I	TTAA	4 cut(s)	360, 390, 423, 435
TseI	GCWGC	2 cut(s)	22, 199
VspI	ATTAAT	1 cut(s)	360
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.