AT3G53980

lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014001
Physical Location & Seq
Reverse (-)
19987562 .. 19988463
902 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53980.1

Sequence Viewer

Length: 345 bp
ATGGCAGCTTCCATGAAATTTCTCTGCATTCTTGGTCTGATTCTCCTCATCGGAACAGTCGTTGACGGTGCAGGGGAGTGTGGTAGATCTTCGCCAGACAATGAGGCGATGAAGCTGGCTCCATGTGCTGGTGCAGCTCAGGACGCTAACTCCGCCGTGCCAGGAGGTTGCTGTACTCAGATTAAGAGATTTTCTCAAAACCCTAAATGTCTCTGCGCCATTCTTCTTTCCGACACGGCCAAAGCCTCCGGTGTCGATCCTGAGGTTGCCCTTACCATCCCTAAACGGTGCAATTTCGCTAACCGTCCCGTCGGTTACAAGTGTGGAGCATACACACTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

114

Amino Acids

11.72

Weight (kDa)

8.4

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 34 - 104 3.9e-11 Probable lipid transfer
Tryp_alpha_amyl PF00234 36 - 108 1.3e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53980 AT3G53980
fragaria_vesca FvH4_6g12710
malus_domestica MD04G1139100.v1.1 MD12G1154900.v1.1
prunus_persica Prupe.6G264700_v2.0.a1
pyrus_communis pycom04g12740
rosa_chinensis RchiOBHm_Chr3g0464631
rosa_laevigata RLG00000024679
rosa_multiflora Rmu_sc0002031.1_g000007 Rmu_sc0014550.1_g000013
rosa_roxburghii Rroxscaffold_6G00415520
rosa_rugosa Rorug03G0073300.1
rosa_samantha Rh3BG135600 Rh3CG138200 Rh3DG137200
rosa_wichuraiana Rw3G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 128
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 128
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 8, 115, 137
AluI AGCT 3 cut(s) 8, 115, 137
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 5, 134
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 261
BbvI GCAGC 2 cut(s) 17, 146
BccI CCATC 1 cut(s) 284
BceAI ACGGC 2 cut(s) 140, 252
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 215
BglII AGATCT 1 cut(s) 86
BisI GCNGC 2 cut(s) 6, 135
BlsI GCNGC 2 cut(s) 7, 136
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 178, 210
Bpu10I CCTNAGC 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse21I CCTNAGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 3 cut(s) 152, 191, 252
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 17, 146
BsgI GTGCAG 2 cut(s) 90, 153
BshFI GGCC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 86, 256
BspACI CCGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 3 cut(s) 151, 190, 253
BspLI GGNNCC 1 cut(s) 120
BspPI GGATC 1 cut(s) 251
BssMI GATC 2 cut(s) 86, 256
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 4 cut(s) 58, 68, 288, 305
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 138, 177, 261
BstF5I GGATG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 2 cut(s) 89, 259
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 86, 256
BstMWI GCNNNNNNNGC 4 cut(s) 125, 134, 143, 152
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 17, 146
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 218
CseI GACGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 174
CviAII CATG 2 cut(s) 13, 123
CviJI RGCY 6 cut(s) 8, 115, 119, 137, 239, 245
CviKI_1 RGCY 6 cut(s) 8, 115, 119, 137, 239, 245
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 3 cut(s) 138, 177, 261
DpnI GATC 2 cut(s) 88, 258
DpnII GATC 2 cut(s) 86, 256
EaeI YGGCCR 1 cut(s) 237
EciI GGCGGA 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 16, 126
FaiI YATR 4 cut(s) 14, 124, 331, 343
FaqI GGGAC 1 cut(s) 291
FatI CATG 2 cut(s) 12, 122
Fnu4HI GCNGC 2 cut(s) 6, 135
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 6, 135
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 6, 135
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 218
Hin1II CATG 2 cut(s) 16, 126
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 39, 53, 180, 232
Hpy188III TCNNGA 2 cut(s) 140, 260
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 4 cut(s) 58, 68, 288, 305
HpyCH4V TGCA 4 cut(s) 27, 71, 134, 291
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 134, 143, 152
HpyF3I CTNAG 3 cut(s) 138, 177, 261
Hsp92II CATG 2 cut(s) 16, 126
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 2 cut(s) 86, 256
LmnI GCTCC 2 cut(s) 124, 326
LpnPI CCDG 9 cut(s) 57, 101, 108, 114, 125, 147, 174, 262, 273
Lsp1109I GCAGC 2 cut(s) 17, 146
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 88, 258
MboI GATC 2 cut(s) 86, 256
MboII GAAGA 2 cut(s) 81, 215
MflI RGATCY 1 cut(s) 86
MluCI AATT 2 cut(s) 17, 292
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 5 cut(s) 56, 97, 158, 256, 256
MseI TTAA 1 cut(s) 183
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 27
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 4 cut(s) 125, 134, 143, 152
NdeII GATC 2 cut(s) 86, 256
NlaIII CATG 2 cut(s) 16, 126
NlaIV GGNNCC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 2 cut(s) 7, 136
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 6, 135
Sau3AI GATC 2 cut(s) 86, 256
ScrFI CCNGG 1 cut(s) 162
SetI ASST 5 cut(s) 10, 117, 139, 169, 267
Sse9I AATT 2 cut(s) 17, 292
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 4 cut(s) 58, 68, 288, 305
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 17, 292
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 2 cut(s) 5, 134
TspDTI ATGAA 2 cut(s) 29, 125
Van91I CCANNNNNTGG 1 cut(s) 128
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.