Prupe.6G264700_v2.0.a1

lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014001
Physical Location & Seq
Reverse (-)
25373275 .. 25375045
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G264700.1

Sequence Viewer

Length: 357 bp
ATGGAGGCTCCAATGAAATTCATTTGCATTCTGGGATTGGTTGCAGTTATATGTACTAGCTGCCTTGAAAGGGTTGATGGGGCTAGCGCATGTGGAAAAGCTAGCCCAGATGATGAGGCCATCAAGCTTGCTCCTTGTGCAAGTGCTGCACAAGATGCAAACGCTCCTGTTTCCAGTGGCTGCTGCCAGCAGGTGAAGAGATTGGGCCAAAACCCTAGCTGCCTCTGTGCTGTTCTGCTCTCTGACACTGCCAAGAACTCTGGTGTCAAGGCTGAGGTTGCCATTACCATTCCCAAACGCTGCAACTTTGCCAACCGCCCTGTTGGCTACAAATGTGGACCTTACACACTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

119

Amino Acids

12.18

Weight (kDa)

8.31

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53980 AT3G53980
fragaria_vesca FvH4_6g12710
malus_domestica MD04G1139100.v1.1 MD12G1154900.v1.1
prunus_persica Prupe.6G264700_v2.0.a1
pyrus_communis pycom04g12740
rosa_chinensis RchiOBHm_Chr3g0464631
rosa_laevigata RLG00000024679
rosa_multiflora Rmu_sc0002031.1_g000007 Rmu_sc0014550.1_g000013
rosa_roxburghii Rroxscaffold_6G00415520
rosa_rugosa Rorug03G0073300.1
rosa_samantha Rh3BG135600 Rh3CG138200 Rh3DG137200
rosa_wichuraiana Rw3G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AciI CCGC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 4 cut(s) 60, 101, 127, 219
AluI AGCT 4 cut(s) 60, 101, 127, 219
AlwNI CAGNNNCTG 1 cut(s) 180
AoxI GGCC 2 cut(s) 117, 205
ApeKI GCWGC 6 cut(s) 60, 146, 180, 183, 219, 300
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 205, 338
AsuHPI GGTGA 1 cut(s) 205
AsuNHI GCTAGC 2 cut(s) 83, 101
AvaII GGWCC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 6 cut(s) 47, 133, 167, 170, 206, 287
BccI CCATC 2 cut(s) 71, 128
BfaI CTAG 4 cut(s) 57, 84, 102, 216
BfuAI ACCTGC 1 cut(s) 181
BglI GCCNNNNNGGC 1 cut(s) 324
BisI GCNGC 6 cut(s) 61, 147, 181, 184, 220, 301
BlsI GCNGC 6 cut(s) 62, 148, 182, 185, 221, 302
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 205, 338
BmiI GGNNCC 1 cut(s) 9
BmsI GCATC 1 cut(s) 145
BmtI GCTAGC 2 cut(s) 87, 105
Bpu10I CCTNAGC 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 6 cut(s) 47, 133, 167, 170, 206, 287
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 2 cut(s) 119, 207
BslI CCNNNNNNNGG 1 cut(s) 70
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 2 cut(s) 119, 207
BspACI CCGC 1 cut(s) 316
BspANI GGCC 2 cut(s) 119, 207
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 181
BspOI GCTAGC 2 cut(s) 87, 105
BsrI ACTGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 2 cut(s) 146, 155
BstC8I GCNNGC 4 cut(s) 85, 103, 129, 188
BstDEI CTNAG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 89
BstMWI GCNNNNNNNGC 5 cut(s) 137, 146, 155, 278, 324
BstNSI RCATGY 1 cut(s) 93
BstV1I GCAGC 6 cut(s) 47, 133, 167, 170, 206, 287
BsuRI GGCC 2 cut(s) 119, 207
BtsI GCAGTG 2 cut(s) 246, 347
BtsIMutI CAGTG 3 cut(s) 181, 246, 347
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 4 cut(s) 85, 103, 129, 188
CaiI CAGNNNCTG 1 cut(s) 180
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 205, 338
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 90, 354
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 338
FaeI CATG 2 cut(s) 93, 357
FaiI YATR 4 cut(s) 50, 52, 91, 355
FatI CATG 2 cut(s) 89, 353
Fnu4HI GCNGC 6 cut(s) 61, 147, 181, 184, 220, 301
Fsp4HI GCNGC 6 cut(s) 61, 147, 181, 184, 220, 301
FspBI CTAG 4 cut(s) 57, 84, 102, 216
GlaI GCGC 1 cut(s) 88
GluI GCNGC 6 cut(s) 61, 147, 181, 184, 220, 301
HaeIII GGCC 2 cut(s) 119, 207
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 93, 357
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 125
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 338
HpyCH4V TGCA 6 cut(s) 27, 44, 140, 149, 158, 303
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 146, 155, 278, 324
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 2 cut(s) 93, 357
HspAI GCGC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 13, 136, 169
LpnPI CCDG 8 cut(s) 17, 120, 176, 180, 187, 200, 246, 333
Lsp1109I GCAGC 6 cut(s) 47, 133, 167, 170, 206, 287
LweI GCATC 1 cut(s) 145
MaeI CTAG 4 cut(s) 57, 84, 102, 216
MboII GAAGA 1 cut(s) 208
MluCI AATT 1 cut(s) 17
MnlI CCTC 3 cut(s) 109, 233, 268
MslI CAYNNNNRTG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 27
MwoI GCNNNNNNNGC 5 cut(s) 137, 146, 155, 278, 324
NheI GCTAGC 2 cut(s) 83, 101
NlaIII CATG 2 cut(s) 93, 357
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 93
PaqCI CACCTGC 1 cut(s) 181
PctI GAATGC 1 cut(s) 27
PkrI GCNGC 6 cut(s) 62, 148, 182, 185, 221, 302
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 205, 338
PstNI CAGNNNCTG 1 cut(s) 180
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 352
SatI GCNGC 6 cut(s) 61, 147, 181, 184, 220, 301
Sau96I GGNCC 2 cut(s) 205, 338
SetI ASST 7 cut(s) 62, 103, 129, 195, 221, 279, 343
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 316
SspMI CTAG 4 cut(s) 57, 84, 102, 216
TasI AATT 1 cut(s) 17
TatI WGTACW 1 cut(s) 53
TscAI CASTG 3 cut(s) 181, 253, 354
TseI GCWGC 6 cut(s) 60, 146, 180, 183, 219, 300
TspDTI ATGAA 2 cut(s) 10, 29
TspRI CASTG 3 cut(s) 181, 253, 354
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 93
XspI CTAG 4 cut(s) 57, 84, 102, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.