Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014001

Physical Location & Seq

Genomic Coordinates Reverse (-)

15719952 .. 15720502

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAGCTGCAGTGAAATTTATTTGCGTGTTAGGGTTTCTTGCAGTTTTCAGCATTGCTATGATTGAAAGGGCTGATGGGGCAAGTGCTTGTGGAAAAGCTAGTCCAGACGAAGAGGCCGCCAAGCTTGCTCCTTGTGCAGATGCCGCACAAGATGAAAAAGCTGCTGTTTCCGCTAGTTGCTGTCAGCAAGTCAAGAGGATGGGACAAAACCCTAGCTGCCTCTGTGCCATCCTGCTTTCTGACACTGCCAAGAGCTCTGGTGTCAAGCTTGAGGTTGCGATAACCATTCCCAAGCGCTGCAACTTTGCCAACCGCCCAGTCGGTACCAAGTGCGGAGGCTATACTCTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

119

Amino Acids

12.11

Weight (kDa)

8.4

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53980 AT3G53980
fragaria_vesca	FvH4_6g12710
malus_domestica	MD04G1139100.v1.1 MD12G1154900.v1.1
prunus_persica	Prupe.6G264700_v2.0.a1
pyrus_communis	pycom04g12740
rosa_chinensis	RchiOBHm_Chr3g0464631
rosa_laevigata	RLG00000024679
rosa_multiflora	Rmu_sc0002031.1_g000007 Rmu_sc0014550.1_g000013
rosa_roxburghii	Rroxscaffold_6G00415520
rosa_rugosa	Rorug03G0073300.1
rosa_samantha	Rh3BG135600 Rh3CG138200 Rh3DG137200
rosa_wichuraiana	Rw3G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	5 cut(s)	120, 147, 174, 316, 336
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	328
AfeI	AGCGCT	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	7 cut(s)	8, 101, 127, 164, 219, 258, 271
AluI	AGCT	7 cut(s)	8, 101, 127, 164, 219, 258, 271
Alw21I	GWGCWC	1 cut(s)	260
Aor51HI	AGCGCT	1 cut(s)	299
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	5 cut(s)	5, 8, 164, 219, 300
ApoI	RAATTY	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	17, 151, 206, 287
BccI	CCATC	3 cut(s)	71, 196, 239
BceAI	ACGGC	1 cut(s)	337
BfaI	CTAG	3 cut(s)	102, 177, 216
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	7 cut(s)	6, 9, 120, 147, 165, 220, 301
BlsI	GCNGC	7 cut(s)	7, 10, 121, 148, 166, 221, 302
BmiI	GGNNCC	1 cut(s)	328
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	207, 231
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	4 cut(s)	17, 151, 206, 287
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	260
BspACI	CCGC	5 cut(s)	120, 147, 174, 316, 336
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	207, 231
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 128, 137, 146, 173
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	4 cut(s)	17, 151, 206, 287
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	207, 231
BtsI	GCAGTG	2 cut(s)	18, 246
BtsIMutI	CAGTG	2 cut(s)	18, 246
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	327
CviQI	GTAC	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	260
Eco47III	AGCGCT	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	260
FaiI	YATR	2 cut(s)	62, 345
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	7 cut(s)	6, 9, 120, 147, 165, 220, 301
FokI	GGATG	2 cut(s)	214, 218
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	7 cut(s)	6, 9, 120, 147, 165, 220, 301
FspBI	CTAG	3 cut(s)	102, 177, 216
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	7 cut(s)	6, 9, 120, 147, 165, 220, 301
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	125, 269
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	107, 196
HpyCH4V	TGCA	4 cut(s)	11, 44, 140, 303
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 128, 137, 146, 173
HspAI	GCGC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	4 cut(s)	120, 246, 248, 333
Lsp1109I	GCAGC	4 cut(s)	17, 151, 206, 287
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	102, 177, 216
MboII	GAAGA	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	17
MnlI	CCTC	5 cut(s)	109, 192, 233, 268, 332
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	8
MwoI	GCNNNNNNNGC	5 cut(s)	80, 128, 137, 146, 173
NlaIV	GGNNCC	1 cut(s)	328
PkrI	GCNGC	7 cut(s)	7, 10, 121, 148, 166, 221, 302
Psp124BI	GAGCTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	260
SatI	GCNGC	7 cut(s)	6, 9, 120, 147, 165, 220, 301
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	8 cut(s)	10, 103, 129, 166, 221, 260, 273, 279
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	5 cut(s)	120, 147, 174, 316, 336
SspMI	CTAG	3 cut(s)	102, 177, 216
SstI	GAGCTC	1 cut(s)	260
TasI	AATT	1 cut(s)	17
TauI	GCSGC	2 cut(s)	122, 149
TscAI	CASTG	2 cut(s)	18, 253
TseI	GCWGC	5 cut(s)	5, 8, 164, 219, 300
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	18, 253
XapI	RAATTY	1 cut(s)	17
XspI	CTAG	3 cut(s)	102, 177, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.