Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012533

Physical Location & Seq

Genomic Coordinates Reverse (-)

20604616 .. 20606650

Gene Structure 2035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGAATCCTTGGTGGGTAGGGAATGTTGCGATCGGTGGAGTTGAGAGTCCAGTGACGTCATCAGCTCCTTCTTTGCACCACAGAAACAGTAACAACAACAACCCACCGACTATGACTCGTTCGGATCCAAGATTGGACCATGACTTCACCACCAACAACAGTGGAAGCCCTAATACCCAGACTCAGAGCCAAGAAGAACAGAACAGCAGAGACGAGCAACCAGCTGTTGAACCCGGATCCGGATCCGGGTCTACGGGTCGTCGTCCTAGAGGTAGACCTCCTGGTTCCAAGAACAAACCAAAGAGTCCAGTTGTTGTTACCAAAGAAAGCCCTAACTCTCTCCAGAGCCATGTTCTTGAGATTGCTACGGGAGCTGACGTGGCGGAAAGCTTAAACGCCTTTGCTCGTAGACGCGGCCGGGGCGTTTCGGTGCTGAGCGGTAGTGGTTTGGTTACTAATGTTACTCTGCGTCAGCCTGCTGCATCCGGTGGAGTTGTTAGTTTACGTGGTCAGTTTGAGATCTTGTCTATGTGTGGGGCTTTTCTTCCTACGTCTGGCTCTCCTGCTGCAGCCGCTGGTTTAACCATTTACTTAGCTGGAGCTCAAGGTCAAGTTGTGGGAGGTGGAGTTGCTGGCCCGCTTATTGCCTCTGGACCCGTTATTGTGATAGCTGCTACGTTTTGCAATGCCACTTATGAGAGGTTACCGATTGAGGAAGAACAACAGCAAGAGCAGCCGCTTCAACTAGAAGATGGGAAGAAGCAGAAAGAAGAGAATGATGATAACGAGAGTGGGAATAACGGAAACGAAGGATCGATGCAGCCGCCGATGTATAATATGCCTCCTAATTTTATCCCAAATGGTCATCAAATGGCTCAACACGACGTGTATTGGGGTGGTCCTCCGCCTCGTGCTCCTCCTTCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

310

Amino Acids

32.6

Weight (kDa)

5.72

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	117 - 228	9.8e-22	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55560
fragaria_vesca	FvH4_7g22970
malus_domestica	MD01G1138500.v1.1 MD07G1202700.v1.1
prunus_persica	Prupe.2G239000_v2.0.a1
pyrus_communis	pycom01g15920 pycom07g18970
rosa_chinensis	RchiOBHm_Chr1g0368171
rosa_laevigata	RLG00000027233
rosa_multiflora	Rmu_sc0006814.1_g000001 Rmu_sc0020763.1_g000001 Rmu_sc0035888.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288830
rosa_rugosa	Rorug01G0339100
rosa_samantha	Rh1AG346600 Rh1BG309200 Rh1CG324700 Rh1DG341100
rosa_wichuraiana	Rw1G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	3 cut(s)	254, 277, 412
AccII	CGCG	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	8 cut(s)	386, 417, 441, 576, 641, 740, 827, 908
AclWI	GGATC	7 cut(s)	122, 135, 234, 240, 247, 253, 823
AcoI	YGGCCR	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	889
AfiI	CCNNNNNNNGG	3 cut(s)	242, 249, 557
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	2 cut(s)	233, 746
AjiI	CACGTC	2 cut(s)	382, 889
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	7 cut(s)	68, 227, 377, 393, 599, 605, 674
AluI	AGCT	7 cut(s)	68, 227, 377, 393, 599, 605, 674
Alw21I	GWGCWC	2 cut(s)	607, 919
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	7 cut(s)	122, 135, 234, 240, 247, 253, 823
AlwNI	CAGNNNCTG	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	2 cut(s)	418, 637
ApeKI	GCWGC	6 cut(s)	482, 569, 572, 674, 736, 823
AspS9I	GGNCC	4 cut(s)	139, 638, 656, 902
AsuC2I	CCSGG	3 cut(s)	237, 250, 422
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	3 cut(s)	139, 656, 902
BamHI	GGATCC	3 cut(s)	127, 239, 245
BanII	GRGCYC	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	160, 192
BauI	CACGAG	1 cut(s)	912
Bbv12I	GWGCWC	2 cut(s)	607, 919
BbvI	GCAGC	6 cut(s)	469, 556, 584, 661, 748, 835
BccI	CCATC	1 cut(s)	749
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	3 cut(s)	237, 250, 422
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	270, 749
BfmI	CTRYAG	1 cut(s)	570
BglII	AGATCT	1 cut(s)	522
BlpI	GCTNAGC	1 cut(s)	437
Bme1390I	CCNGG	4 cut(s)	237, 250, 285, 422
Bme18I	GGWCC	3 cut(s)	139, 656, 902
BmgBI	CACGTC	2 cut(s)	382, 889
BmgT120I	GGNCC	4 cut(s)	139, 638, 656, 902
BmiI	GGNNCC	5 cut(s)	129, 241, 247, 289, 658
BmrFI	CCNGG	4 cut(s)	237, 250, 285, 422
BmsI	GCATC	2 cut(s)	494, 810
BpmI	CTGGAG	2 cut(s)	329, 621
Bpu1102I	GCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	380, 591
BpuMI	CCSGG	3 cut(s)	237, 250, 422
Bsa29I	ATCGAT	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	11, 421
BsaWI	WCCGGW	2 cut(s)	242, 488
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 249, 557
Bse1I	ACTGG	2 cut(s)	53, 311
Bse3DI	GCAATG	1 cut(s)	694
Bse8I	GATNNNNATC	1 cut(s)	244
BseAI	TCCGGA	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	818
BseDI	CCNNGG	2 cut(s)	11, 421
BseGI	GGATG	1 cut(s)	485
BseJI	GATNNNNATC	1 cut(s)	244
BseLI	CCNNNNNNNGG	3 cut(s)	242, 249, 557
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	2 cut(s)	200, 428
BseNI	ACTGG	2 cut(s)	53, 311
BseRI	GAGGAG	1 cut(s)	909
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	6 cut(s)	469, 556, 584, 661, 748, 835
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	2 cut(s)	36, 421
BshFI	GGCC	2 cut(s)	420, 639
BshVI	ATCGAT	1 cut(s)	818
BsiEI	CGRYCG	2 cut(s)	36, 421
BsiHKAI	GWGCWC	2 cut(s)	607, 919
BsiSI	CCGG	5 cut(s)	237, 243, 249, 421, 489
BslI	CCNNNNNNNGG	3 cut(s)	242, 249, 557
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	420, 639
Bsp1286I	GDGCHC	2 cut(s)	607, 919
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
Bsp1720I	GCTNAGC	1 cut(s)	437
BspACI	CCGC	8 cut(s)	386, 417, 441, 576, 641, 740, 827, 908
BspANI	GGCC	2 cut(s)	420, 639
BspCNI	CTCAG	2 cut(s)	199, 429
BspDI	ATCGAT	1 cut(s)	818
BspEI	TCCGGA	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	5 cut(s)	129, 241, 247, 289, 658
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	7 cut(s)	122, 135, 234, 240, 247, 253, 823
BsrBI	CCGCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	2 cut(s)	53, 311
BssECI	CCNNGG	2 cut(s)	11, 421
BssMI	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	912
BssT1I	CCWWGG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	92, 164
Bst6I	CTCTTC	1 cut(s)	768
BstACI	GRCGYC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	480, 637, 641
BstDEI	CTNAG	3 cut(s)	186, 437, 595
BstEII	GGTNACC	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	6 cut(s)	36, 130, 242, 248, 525, 818
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
BstMCI	CGRYCG	2 cut(s)	36, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	374, 383, 423, 575, 736
BstNI	CCWGG	1 cut(s)	285
BstPI	GGTNACC	1 cut(s)	705
BstSCI	CCNGG	4 cut(s)	235, 248, 283, 420
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	6 cut(s)	469, 556, 584, 661, 748, 835
BstX2I	RGATCY	4 cut(s)	127, 239, 245, 522
BstYI	RGATCY	4 cut(s)	127, 239, 245, 522
BstZI	CGGCCG	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	818
BsuRI	GGCC	2 cut(s)	420, 639
BsuTUI	ATCGAT	1 cut(s)	818
BtrI	CACGTC	2 cut(s)	382, 889
BtsCI	GGATG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	60, 169
Cac8I	GCNNGC	3 cut(s)	480, 637, 641
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	4 cut(s)	139, 638, 656, 902
ClaI	ATCGAT	1 cut(s)	818
CseI	GACGC	2 cut(s)	423, 461
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	2 cut(s)	143, 353
DdeI	CTNAG	3 cut(s)	186, 437, 595
DpnI	GATC	6 cut(s)	35, 129, 241, 247, 524, 817
DpnII	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
DraIII	CACNNNGTG	1 cut(s)	889
EaeI	YGGCCR	1 cut(s)	418
EagI	CGGCCG	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
EciI	GGCGGA	2 cut(s)	401, 897
Ecl136II	GAGCTC	1 cut(s)	605
EclXI	CGGCCG	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	139, 656, 902
Eco52I	CGGCCG	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	705
EcoICRI	GAGCTC	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	2 cut(s)	146, 356
FaiI	YATR	7 cut(s)	116, 144, 354, 533, 699, 837, 842
FatI	CATG	2 cut(s)	142, 352
FauI	CCCGC	1 cut(s)	648
FblI	GTMKAC	3 cut(s)	254, 277, 412
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	607
FspBI	CTAG	2 cut(s)	270, 749
GsuI	CTGGAG	2 cut(s)	329, 621
HaeIII	GGCC	2 cut(s)	420, 639
HapII	CCGG	5 cut(s)	237, 243, 249, 421, 489
HgaI	GACGC	2 cut(s)	423, 461
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	146, 356
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	5 cut(s)	7, 49, 118, 184, 307
HpaII	CCGG	5 cut(s)	237, 243, 249, 421, 489
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	4 cut(s)	255, 278, 413, 506
Hpy188I	TCNGA	2 cut(s)	127, 189
Hpy188III	TCNNGA	4 cut(s)	243, 346, 359, 654
Hpy8I	GTNNAC	4 cut(s)	255, 278, 413, 506
Hpy99I	CGWCG	2 cut(s)	267, 890
HpyAV	CCTTC	3 cut(s)	81, 806, 933
HpyCH4III	ACNGT	2 cut(s)	92, 164
HpyCH4IV	ACGT	6 cut(s)	59, 381, 508, 554, 680, 888
HpyCH4V	TGCA	5 cut(s)	79, 485, 572, 687, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	374, 383, 423, 575, 736
HpyF3I	CTNAG	3 cut(s)	186, 437, 595
HpySE526I	ACGT	6 cut(s)	59, 381, 508, 554, 680, 888
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	146, 356
Kpn2I	TCCGGA	1 cut(s)	242
Kzo9I	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
LmnI	GCTCC	4 cut(s)	73, 374, 602, 922
Lsp1109I	GCAGC	6 cut(s)	469, 556, 584, 661, 748, 835
LweI	GCATC	2 cut(s)	494, 810
MaeI	CTAG	2 cut(s)	270, 749
MaeII	ACGT	6 cut(s)	59, 381, 508, 554, 680, 888
MaeIII	GTNAC	6 cut(s)	55, 92, 319, 454, 463, 705
MalI	GATC	6 cut(s)	35, 129, 241, 247, 524, 817
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
MboII	GAAGA	6 cut(s)	209, 539, 731, 764, 772, 785
MflI	RGATCY	4 cut(s)	127, 239, 245, 522
MhlI	GDGCHC	2 cut(s)	607, 919
MluCI	AATT	1 cut(s)	850
MlyI	GAGTC	4 cut(s)	58, 112, 178, 316
MroI	TCCGGA	1 cut(s)	242
MseI	TTAA	2 cut(s)	395, 584
MspA1I	CMGCKG	2 cut(s)	227, 578
MspI	CCGG	5 cut(s)	237, 243, 249, 421, 489
MspR9I	CCNGG	4 cut(s)	237, 250, 285, 422
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	374, 383, 423, 575, 736
NciI	CCSGG	3 cut(s)	237, 250, 422
NdeII	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
NlaIII	CATG	2 cut(s)	146, 356
NlaIV	GGNNCC	5 cut(s)	129, 241, 247, 289, 658
NmuCI	GTSAC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	7
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	4 cut(s)	57, 112, 178, 315
PpsI	GAGTC	4 cut(s)	57, 112, 178, 315
Ppu21I	YACGTR	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	5 cut(s)	129, 241, 247, 289, 658
PspPI	GGNCC	4 cut(s)	139, 638, 656, 902
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	4 cut(s)	127, 239, 245, 522
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	2 cut(s)	395, 584
Sau3AI	GATC	6 cut(s)	33, 127, 239, 245, 522, 815
Sau96I	GGNCC	4 cut(s)	139, 638, 656, 902
SchI	GAGTC	4 cut(s)	58, 112, 178, 316
ScrFI	CCNGG	4 cut(s)	237, 250, 285, 422
SduI	GDGCHC	2 cut(s)	607, 919
SfaNI	GCATC	2 cut(s)	494, 810
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	3 cut(s)	139, 656, 902
SmlI	CTYRAG	2 cut(s)	359, 606
SmoI	CTYRAG	2 cut(s)	359, 606
Sse9I	AATT	1 cut(s)	850
SsiI	CCGC	8 cut(s)	386, 417, 441, 576, 641, 740, 827, 908
SspMI	CTAG	2 cut(s)	270, 749
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	4 cut(s)	235, 248, 283, 420
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	92, 164
TaiI	ACGT	6 cut(s)	62, 384, 511, 557, 683, 891
TaqI	TCGA	1 cut(s)	818
TasI	AATT	1 cut(s)	850
TauI	GCSGC	4 cut(s)	420, 578, 742, 829
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	395, 584
Tru9I	TTAA	2 cut(s)	395, 584
TscAI	CASTG	2 cut(s)	60, 169
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	6 cut(s)	482, 569, 572, 674, 736, 823
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	2 cut(s)	60, 169
VpaK11BI	GGWCC	3 cut(s)	139, 656, 902
XmiI	GTMKAC	3 cut(s)	254, 277, 412
XspI	CTAG	2 cut(s)	270, 749
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.