MD07G1202700.v1.1

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012533
Physical Location & Seq
Reverse (-)
28070433 .. 28071377
945 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1202700.v1.1.491

Sequence Viewer

Length: 945 bp
ATGGCGAATCGATGGTGGGCCGGAAATGTTTCCATGGGCGGAGGAGGTCATGTGGATTCAATCTCCTCGACTCCGCCGTCTCTCCACCTCAGAAACACCGAGGAACAACTCGACGACCAAGACAACACTACTCCCACCAACAGCAGCACCAGCCCACACAAGCAGAACAACAAACACCACGAAGATGGTCGGGACAACAATGACCTGGAAGGCGACGATCAGGGCCCTAACACCGGCAGCGGCAGCCATGACAGCCTCGAGCCAGGAAGTAGCAACCGGAGGCCGCGTGGCCGCCCCCCTGGTTCCAAAAACAAGCCCAAACCGCCCGTTGTCATCACTAAAGAGAGCCCCAACGCTCTCCGAAGCCACGTCTTGGAAATCAGCAGCGGCAGCGACATTGTAGACAGCATTGCCACCTTTTCTCAAAGACGGCATAGAGGCGTCTCTGTCCTCAGCGGCAGCGGAATTGTCGCTAATGTAACTCTTCGGCAACCAGCAGCGCCAACTGGAGTGATTACATTGCACGGAAGGTTTGAGATTCTATCGTTGTCAGGGGCGTTCCTACCTGCCCCGTCACCGCCCGGCGCGACAGGACTGACCGTGTACTTGGCAGGCGGCCAGGGGCAGGTGGTGGGAGGCACCGTGATGGGAGCGTTGGTGGCTTCAGGTCCGGTGATGGTTATTGCAGCTACGTTCACAAATGCAACATATGAGAGGCTGCCACTCGAGGAAGAGCAAGGTGGAGAAGGAGGAATGCAGATACAGCAGCAATCAGGTGTGAATTCGGCAGGGACAGGAGCGAATTCGGGATCTCGAGGTGTGGGTGAGGATCCTAGTGCAATGGCTGCTTACAATCTACCTCCGAATTTACTTGCGAATGGCGGTCAGATCCCTCATGATGTTTTCTGGGGTCCTCCCCCTCCGAGACCTCCTCCATCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

315

Amino Acids

32.54

Weight (kDa)

5.91

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 121 - 234 7.1e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55560
fragaria_vesca FvH4_7g22970
malus_domestica MD01G1138500.v1.1 MD07G1202700.v1.1
prunus_persica Prupe.2G239000_v2.0.a1
pyrus_communis pycom01g15920 pycom07g18970
rosa_chinensis RchiOBHm_Chr1g0368171
rosa_laevigata RLG00000027233
rosa_multiflora Rmu_sc0006814.1_g000001 Rmu_sc0020763.1_g000001 Rmu_sc0035888.1_g000001
rosa_roxburghii Rroxscaffold_4G00288830
rosa_rugosa Rorug01G0339100
rosa_samantha Rh1AG346600 Rh1BG309200 Rh1CG324700 Rh1DG341100
rosa_wichuraiana Rw1G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
AasI GACNNNNNNGTC 1 cut(s) 76
Acc36I ACCTGC 2 cut(s) 574, 616
AccB1I GGYRCC 1 cut(s) 638
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 1 cut(s) 402
AccII CGCG 2 cut(s) 286, 587
AclWI GGATC 4 cut(s) 817, 824, 837, 883
AcoI YGGCCR 2 cut(s) 289, 616
AcsI RAATTY 3 cut(s) 781, 802, 865
AcuI CTGAAG 1 cut(s) 648
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 3 cut(s) 233, 373, 625
AgsI TTSAA 1 cut(s) 60
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 4 cut(s) 204, 262, 298, 618
AluBI AGCT 1 cut(s) 689
AluI AGCT 1 cut(s) 689
Alw26I GTCTC 3 cut(s) 84, 448, 919
AlwI GGATC 4 cut(s) 817, 824, 837, 883
Ama87I CYCGRG 3 cut(s) 257, 725, 813
AoxI GGCC 5 cut(s) 18, 223, 281, 289, 616
ApaI GGGCCC 1 cut(s) 227
ApoI RAATTY 3 cut(s) 781, 802, 865
Asp700I GAANNNNTTC 1 cut(s) 28
AspLEI GCGC 2 cut(s) 502, 587
AspS9I GGNCC 5 cut(s) 18, 223, 224, 668, 911
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 3 cut(s) 567, 685, 836
AvaI CYCGRG 3 cut(s) 257, 725, 813
AvaII GGWCC 2 cut(s) 668, 911
BaeGI GKGCMC 1 cut(s) 227
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 227, 350
BbvCI CCTCAGC 1 cut(s) 452
BccI CCATC 5 cut(s) 6, 179, 640, 670, 943
BceAI ACGGC 2 cut(s) 61, 446
BciT130I CCWGG 4 cut(s) 206, 264, 300, 620
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 3 cut(s) 84, 448, 919
BfaI CTAG 1 cut(s) 834
BfoI RGCGCY 1 cut(s) 503
BfuAI ACCTGC 2 cut(s) 574, 616
Bme1390I CCNGG 5 cut(s) 206, 264, 300, 582, 620
Bme18I GGWCC 2 cut(s) 668, 911
BmeT110I CYCGRG 3 cut(s) 257, 725, 813
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 5 cut(s) 18, 223, 224, 668, 911
BmiI GGNNCC 5 cut(s) 225, 304, 640, 831, 912
BmrFI CCNGG 5 cut(s) 206, 264, 300, 582, 620
BplI GAGNNNNNCTC 1 cut(s) 916
BpmI CTGGAG 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 582
Bsa29I ATCGAT 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 919
BsaJI CCNNGG 4 cut(s) 33, 99, 298, 619
BsaWI WCCGGW 2 cut(s) 276, 670
BsaXI ACNNNNNCTCC 8 cut(s) 36, 66, 271, 301, 627, 642, 657, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 373, 625
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 511
Bse3DI GCAATG 3 cut(s) 408, 518, 846
BseBI CCWGG 4 cut(s) 206, 264, 300, 620
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 4 cut(s) 33, 99, 298, 619
BseLI CCNNNNNNNGG 3 cut(s) 233, 373, 625
BseMI GCAATG 3 cut(s) 408, 518, 846
BseMII CTCAG 2 cut(s) 103, 466
BseNI ACTGG 1 cut(s) 511
BseRI GAGGAG 3 cut(s) 55, 57, 921
BseSI GKGCMC 1 cut(s) 227
Bsh1236I CGCG 2 cut(s) 286, 587
BshFI GGCC 5 cut(s) 20, 225, 283, 291, 618
BshNI GGYRCC 1 cut(s) 638
BshVI ATCGAT 1 cut(s) 10
BsiHKCI CYCGRG 3 cut(s) 257, 725, 813
BsiSI CCGG 5 cut(s) 21, 234, 277, 582, 671
BslFI GGGAC 2 cut(s) 206, 805
BslI CCNNNNNNNGG 3 cut(s) 233, 373, 625
BsmAI GTCTC 3 cut(s) 84, 448, 919
BsmBI CGTCTC 2 cut(s) 84, 448
BsmFI GGGAC 2 cut(s) 206, 805
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 5 cut(s) 20, 225, 283, 291, 618
Bso31I GGTCTC 1 cut(s) 919
BsoBI CYCGRG 3 cut(s) 257, 725, 813
Bsp120I GGGCCC 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 227, 350
Bsp143I GATC 4 cut(s) 217, 809, 829, 888
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 5 cut(s) 20, 225, 283, 291, 618
BspCNI CTCAG 2 cut(s) 102, 465
BspDI ATCGAT 1 cut(s) 10
BspFNI CGCG 2 cut(s) 286, 587
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 5 cut(s) 225, 304, 640, 831, 912
BspMI ACCTGC 2 cut(s) 574, 616
BspPI GGATC 4 cut(s) 817, 824, 837, 883
BspQI GCTCTTC 1 cut(s) 726
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 919
BsrDI GCAATG 3 cut(s) 408, 518, 846
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 511
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 4 cut(s) 33, 99, 298, 619
BssMI GATC 4 cut(s) 217, 809, 829, 888
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 4 cut(s) 206, 264, 300, 620
Bst4CI ACNGT 2 cut(s) 601, 643
Bst6I CTCTTC 2 cut(s) 489, 726
BstACI GRCGYC 1 cut(s) 441
BstAPI GCANNNNNTGC 1 cut(s) 845
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 2 cut(s) 89, 452
BstDSI CCRYGG 1 cut(s) 33
BstFNI CGCG 2 cut(s) 286, 587
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 2 cut(s) 502, 587
BstKTI GATC 4 cut(s) 220, 812, 832, 891
BstMAI GTCTC 3 cut(s) 84, 448, 919
BstMBI GATC 4 cut(s) 217, 809, 829, 888
BstMWI GCNNNNNNNGC 8 cut(s) 150, 243, 252, 322, 390, 659, 763, 845
BstNI CCWGG 4 cut(s) 206, 264, 300, 620
BstSCI CCNGG 5 cut(s) 204, 262, 298, 580, 618
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 2 cut(s) 286, 587
BstX2I RGATCY 3 cut(s) 809, 829, 888
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 3 cut(s) 809, 829, 888
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 5 cut(s) 20, 225, 283, 291, 618
BsuTUI ATCGAT 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 370
BveI ACCTGC 2 cut(s) 574, 616
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 1 cut(s) 895
CfoI GCGC 2 cut(s) 502, 587
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 5 cut(s) 18, 223, 224, 668, 911
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 604
CviAII CATG 4 cut(s) 34, 50, 248, 896
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 2 cut(s) 89, 452
DpnI GATC 4 cut(s) 219, 811, 831, 890
DpnII GATC 4 cut(s) 217, 809, 829, 888
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 289, 616
Eam1104I CTCTTC 2 cut(s) 489, 726
EarI CTCTTC 2 cut(s) 489, 726
EciI GGCGGA 2 cut(s) 54, 63
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 227, 350
Eco31I GGTCTC 1 cut(s) 919
Eco47I GGWCC 2 cut(s) 668, 911
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 3 cut(s) 257, 725, 813
EcoO109I RGGNCCY 3 cut(s) 223, 224, 911
EcoRI GAATTC 2 cut(s) 781, 802
EcoRII CCWGG 4 cut(s) 204, 262, 298, 618
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 2 cut(s) 227, 350
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 2 cut(s) 84, 448
FaeI CATG 4 cut(s) 37, 53, 251, 899
FaiI YATR 7 cut(s) 35, 51, 249, 435, 709, 711, 897
FaqI GGGAC 2 cut(s) 206, 805
FatI CATG 4 cut(s) 33, 49, 247, 895
FauNDI CATATG 1 cut(s) 709
FblI GTMKAC 1 cut(s) 402
FriOI GRGCYC 2 cut(s) 227, 350
FspBI CTAG 1 cut(s) 834
GlaI GCGC 2 cut(s) 501, 586
GsuI CTGGAG 1 cut(s) 528
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 5 cut(s) 20, 225, 283, 291, 618
HapII CCGG 5 cut(s) 21, 234, 277, 582, 671
HgaI GACGC 1 cut(s) 430
HhaI GCGC 2 cut(s) 502, 587
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 4 cut(s) 37, 53, 251, 899
Hin6I GCGC 2 cut(s) 500, 585
HinP1I GCGC 2 cut(s) 500, 585
HinfI GANTC 4 cut(s) 7, 56, 70, 538
HpaII CCGG 5 cut(s) 21, 234, 277, 582, 671
HphI GGTGA 3 cut(s) 567, 685, 836
Hpy166II GTNNAC 3 cut(s) 403, 604, 696
Hpy188I TCNGA 5 cut(s) 92, 362, 864, 888, 924
Hpy188III TCNNGA 4 cut(s) 191, 807, 813, 896
Hpy8I GTNNAC 3 cut(s) 403, 604, 696
Hpy99I CGWCG 2 cut(s) 116, 218
HpyAV CCTTC 3 cut(s) 203, 522, 740
HpyCH4III ACNGT 2 cut(s) 601, 643
HpyCH4IV ACGT 2 cut(s) 369, 692
HpyCH4V TGCA 5 cut(s) 523, 686, 704, 757, 839
HpyF10VI GCNNNNNNNGC 8 cut(s) 150, 243, 252, 322, 390, 659, 763, 845
HpyF3I CTNAG 2 cut(s) 89, 452
HpySE526I ACGT 2 cut(s) 369, 692
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 4 cut(s) 37, 53, 251, 899
HspAI GCGC 2 cut(s) 500, 585
Kzo9I GATC 4 cut(s) 217, 809, 829, 888
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 2 cut(s) 650, 797
MaeI CTAG 1 cut(s) 834
MaeII ACGT 2 cut(s) 369, 692
MaeIII GTNAC 2 cut(s) 478, 573
MalI GATC 4 cut(s) 219, 811, 831, 890
MboI GATC 4 cut(s) 217, 809, 829, 888
MboII GAAGA 3 cut(s) 194, 476, 743
MflI RGATCY 3 cut(s) 809, 829, 888
MhlI GDGCHC 2 cut(s) 227, 350
MluCI AATT 4 cut(s) 465, 781, 802, 865
MlyI GAGTC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 28
MslI CAYNNNNRTG 2 cut(s) 183, 644
MspA1I CMGCKG 4 cut(s) 240, 387, 456, 462
MspI CCGG 5 cut(s) 21, 234, 277, 582, 671
MspR9I CCNGG 5 cut(s) 206, 264, 300, 582, 620
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 4 cut(s) 206, 264, 300, 620
MvnI CGCG 2 cut(s) 286, 587
MwoI GCNNNNNNNGC 8 cut(s) 150, 243, 252, 322, 390, 659, 763, 845
NciI CCSGG 1 cut(s) 582
NcoI CCATGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 709
NdeII GATC 4 cut(s) 217, 809, 829, 888
NlaIII CATG 4 cut(s) 37, 53, 251, 899
NlaIV GGNNCC 5 cut(s) 225, 304, 640, 831, 912
NmuCI GTSAC 1 cut(s) 573
PaeR7I CTCGAG 3 cut(s) 257, 725, 813
PagI TCATGA 1 cut(s) 895
PaqCI CACCTGC 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 726
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PctI GAATGC 1 cut(s) 759
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 3 cut(s) 7, 56, 538
PflMI CCANNNNNTGG 1 cut(s) 373
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 911
Psp5II RGGWCCY 1 cut(s) 911
Psp6I CCWGG 4 cut(s) 204, 262, 298, 618
PspGI CCWGG 4 cut(s) 204, 262, 298, 618
PspN4I GGNNCC 5 cut(s) 225, 304, 640, 831, 912
PspOMI GGGCCC 1 cut(s) 223
PspPI GGNCC 5 cut(s) 18, 223, 224, 668, 911
PspPPI RGGWCCY 1 cut(s) 911
PspXI VCTCGAGB 2 cut(s) 257, 725
PsuI RGATCY 3 cut(s) 809, 829, 888
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
RseI CAYNNNNRTG 2 cut(s) 183, 644
SapI GCTCTTC 1 cut(s) 726
Sau3AI GATC 4 cut(s) 217, 809, 829, 888
Sau96I GGNCC 5 cut(s) 18, 223, 224, 668, 911
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 5 cut(s) 206, 264, 300, 582, 620
SduI GDGCHC 2 cut(s) 227, 350
Sfr274I CTCGAG 3 cut(s) 257, 725, 813
SinI GGWCC 2 cut(s) 668, 911
SlaI CTCGAG 3 cut(s) 257, 725, 813
SmiMI CAYNNNNRTG 2 cut(s) 183, 644
SmlI CTYRAG 3 cut(s) 257, 725, 813
SmoI CTYRAG 3 cut(s) 257, 725, 813
Sse9I AATT 4 cut(s) 465, 781, 802, 865
SspMI CTAG 1 cut(s) 834
StyD4I CCNGG 5 cut(s) 204, 262, 298, 580, 618
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 601, 643
TaiI ACGT 2 cut(s) 372, 695
TaqI TCGA 6 cut(s) 10, 68, 111, 258, 726, 814
TasI AATT 4 cut(s) 465, 781, 802, 865
TatI WGTACW 1 cut(s) 603
TauI GCSGC 6 cut(s) 243, 286, 294, 390, 459, 618
TfiI GAWTC 3 cut(s) 7, 56, 538
TseFI GTSAC 1 cut(s) 573
Tsp45I GTSAC 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 540
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 668, 911
XapI RAATTY 3 cut(s) 781, 802, 865
XhoI CTCGAG 3 cut(s) 257, 725, 813
XmiI GTMKAC 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 28
XspI CTAG 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.