pycom07g18970

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012533
Physical Location & Seq
Reverse (-)
21318479 .. 21319414
936 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18970.1

Sequence Viewer

Length: 936 bp
ATGGCGAATCGATGGTGGGCTGGAAATGTTTCCATGGGCGGAGGAGGTCATGTGGATTCAATCTCCTCGACTCCGCCGTCTCTCCACCTCAGAAACACCGAGGAACAACTCGACGACCAAGACAACACCACCACTACTCCCACCAACAGCAGCACCAGCCCTCACAAGCAGAACAACAAGCACCACGAAGATGGTCGGGACAACAATGACCTGGAAGGCGATGATCAGGGTCCTAACACCGGTAGCGGCAGCCATGACAGCCTCGAGCCAGGAAGTAGCAACCGGAGGCCGCGTGGCCGCCCCCCTGGTTCCAAAAACAAGCCCAAACCGCCCGTTGTCATCACTAAAGAGAGCCCCAACGCTCTCCGAAGCCACGTCTTGGAAATCAGCAGCGGCAGCGACATTGTAGACAGCATTGCCACCTTTTCTCAAAGACGGCATAGAGGCGTCTCTGTCCTGAGCGGCAGCGGCATTGTCGCTAATGTAACTCTTCGGCAACCAGCAGCGCCAACTGGAGTGATTACATTGCACGGAAGGTTTGAGATTCTATCGTTGTCAGGGGCGTTCCTACCTGCCCCATCACCGCCTGGCGCGACAGGACTGACCGTGTACTTGGCGGGCGGCCAGGGGCAGGTGGTGGGAGGCACCGTGATGGGAGCATTGGTGGCTTCTGGTCCGGTGATTGTTATTGCAGCTACGTTCACAAATGCAACATATGAAAGGCTGCCACTCGAGGAAGAGCAAGGTGGAGAAGGAGGAATGCAGATACCGCAGGAACAGCAGCAATCAGGTGTGAATTCGGGATCTCGAGGTGTTGGTGAGAATGCTAGTGCAATGGCTGTTTACAATCTGCCTCCGAATTTACTTGCGAATGGCGGTCAGATCCCTCATGATGTTTTCTGGGGTCCTCCCCCTCCGAGACCTCCATCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

312

Amino Acids

32.42

Weight (kDa)

5.91

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 123 - 236 1.1e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55560
fragaria_vesca FvH4_7g22970
malus_domestica MD01G1138500.v1.1 MD07G1202700.v1.1
prunus_persica Prupe.2G239000_v2.0.a1
pyrus_communis pycom01g15920 pycom07g18970
rosa_chinensis RchiOBHm_Chr1g0368171
rosa_laevigata RLG00000027233
rosa_multiflora Rmu_sc0006814.1_g000001 Rmu_sc0020763.1_g000001 Rmu_sc0035888.1_g000001
rosa_roxburghii Rroxscaffold_4G00288830
rosa_rugosa Rorug01G0339100
rosa_samantha Rh1AG346600 Rh1BG309200 Rh1CG324700 Rh1DG341100
rosa_wichuraiana Rw1G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 622
AasI GACNNNNNNGTC 1 cut(s) 76
Acc36I ACCTGC 2 cut(s) 580, 622
AccB1I GGYRCC 1 cut(s) 644
AccB7I CCANNNNNTGG 1 cut(s) 379
AccBSI CCGCTC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 408
AccII CGCG 2 cut(s) 292, 593
AclWI GGATC 2 cut(s) 811, 877
AcoI YGGCCR 2 cut(s) 295, 622
AcsI RAATTY 2 cut(s) 796, 859
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 3 cut(s) 239, 379, 631
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 1 cut(s) 60
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 5 cut(s) 210, 268, 304, 586, 624
AluBI AGCT 1 cut(s) 695
AluI AGCT 1 cut(s) 695
Alw26I GTCTC 3 cut(s) 84, 454, 913
AlwI GGATC 2 cut(s) 811, 877
Ama87I CYCGRG 3 cut(s) 263, 731, 807
AoxI GGCC 3 cut(s) 287, 295, 622
ApeKI GCWGC 9 cut(s) 150, 249, 390, 396, 465, 503, 692, 724, 781
ApoI RAATTY 2 cut(s) 796, 859
AsiGI ACCGGT 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 28
AspLEI GCGC 2 cut(s) 508, 593
AspS9I GGNCC 3 cut(s) 230, 674, 905
AsuHPI GGTGA 3 cut(s) 573, 691, 830
AvaI CYCGRG 3 cut(s) 263, 731, 807
AvaII GGWCC 3 cut(s) 230, 674, 905
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 356
BbvI GCAGC 9 cut(s) 162, 261, 402, 408, 477, 515, 704, 711, 793
BccI CCATC 5 cut(s) 6, 185, 586, 646, 934
BceAI ACGGC 2 cut(s) 61, 452
BciT130I CCWGG 5 cut(s) 212, 270, 306, 588, 626
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 3 cut(s) 84, 454, 913
BfaI CTAG 1 cut(s) 828
BfoI RGCGCY 1 cut(s) 509
BfuAI ACCTGC 2 cut(s) 580, 622
Bme1390I CCNGG 5 cut(s) 212, 270, 306, 588, 626
Bme18I GGWCC 3 cut(s) 230, 674, 905
BmeT110I CYCGRG 3 cut(s) 263, 731, 807
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 3 cut(s) 230, 674, 905
BmiI GGNNCC 4 cut(s) 231, 310, 646, 906
BmrFI CCNGG 5 cut(s) 212, 270, 306, 588, 626
BpmI CTGGAG 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 4 cut(s) 33, 99, 304, 625
BsaWI WCCGGW 3 cut(s) 239, 282, 676
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 379, 631
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 517
Bse3DI GCAATG 3 cut(s) 414, 524, 840
BseBI CCWGG 5 cut(s) 212, 270, 306, 588, 626
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 4 cut(s) 33, 99, 304, 625
BseLI CCNNNNNNNGG 3 cut(s) 239, 379, 631
BseMI GCAATG 3 cut(s) 414, 524, 840
BseMII CTCAG 2 cut(s) 103, 449
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 2 cut(s) 55, 57
BseXI GCAGC 9 cut(s) 162, 261, 402, 408, 477, 515, 704, 711, 793
Bsh1236I CGCG 2 cut(s) 292, 593
BshFI GGCC 3 cut(s) 289, 297, 624
BshNI GGYRCC 1 cut(s) 644
BshTI ACCGGT 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 10
BsiHKCI CYCGRG 3 cut(s) 263, 731, 807
BsiSI CCGG 3 cut(s) 240, 283, 677
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 239, 379, 631
BsmAI GTCTC 3 cut(s) 84, 454, 913
BsmBI CGTCTC 2 cut(s) 84, 454
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 2 cut(s) 765, 829
BsnI GGCC 3 cut(s) 289, 297, 624
Bso31I GGTCTC 1 cut(s) 913
BsoBI CYCGRG 3 cut(s) 263, 731, 807
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 3 cut(s) 223, 803, 882
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 3 cut(s) 289, 297, 624
BspCNI CTCAG 2 cut(s) 102, 450
BspDI ATCGAT 1 cut(s) 10
BspFNI CGCG 2 cut(s) 292, 593
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 4 cut(s) 231, 310, 646, 906
BspMI ACCTGC 2 cut(s) 580, 622
BspPI GGATC 2 cut(s) 811, 877
BspQI GCTCTTC 1 cut(s) 732
BspT107I GGYRCC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 913
BsrBI CCGCTC 1 cut(s) 462
BsrDI GCAATG 3 cut(s) 414, 524, 840
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 4 cut(s) 33, 99, 304, 625
BssMI GATC 3 cut(s) 223, 803, 882
BssNI GRCGYC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 5 cut(s) 212, 270, 306, 588, 626
Bst4CI ACNGT 2 cut(s) 607, 649
Bst6I CTCTTC 2 cut(s) 495, 732
BstACI GRCGYC 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 89, 458
BstDSI CCRYGG 1 cut(s) 33
BstFNI CGCG 2 cut(s) 292, 593
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 2 cut(s) 508, 593
BstKTI GATC 3 cut(s) 226, 806, 885
BstMAI GTCTC 3 cut(s) 84, 454, 913
BstMBI GATC 3 cut(s) 223, 803, 882
BstMWI GCNNNNNNNGC 8 cut(s) 156, 258, 328, 396, 468, 665, 769, 778
BstNI CCWGG 5 cut(s) 212, 270, 306, 588, 626
BstSCI CCNGG 5 cut(s) 210, 268, 304, 586, 624
BstUI CGCG 2 cut(s) 292, 593
BstV1I GCAGC 9 cut(s) 162, 261, 402, 408, 477, 515, 704, 711, 793
BstX2I RGATCY 2 cut(s) 803, 882
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 2 cut(s) 803, 882
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 3 cut(s) 289, 297, 624
BsuTUI ATCGAT 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 376
BveI ACCTGC 2 cut(s) 580, 622
Cac8I GCNNGC 1 cut(s) 619
CciI TCATGA 1 cut(s) 889
CfoI GCGC 2 cut(s) 508, 593
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 3 cut(s) 230, 674, 905
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 610
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 4 cut(s) 34, 50, 254, 890
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 2 cut(s) 89, 458
DpnI GATC 3 cut(s) 225, 805, 884
DpnII GATC 3 cut(s) 223, 803, 882
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 295, 622
Eam1104I CTCTTC 2 cut(s) 495, 732
EarI CTCTTC 2 cut(s) 495, 732
EciI GGCGGA 2 cut(s) 54, 63
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 913
Eco47I GGWCC 3 cut(s) 230, 674, 905
Eco88I CYCGRG 3 cut(s) 263, 731, 807
EcoO109I RGGNCCY 2 cut(s) 230, 905
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 5 cut(s) 210, 268, 304, 586, 624
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 2 cut(s) 84, 454
FaeI CATG 4 cut(s) 37, 53, 257, 893
FaiI YATR 7 cut(s) 35, 51, 255, 441, 715, 717, 891
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 33, 49, 253, 889
FauI CCCGC 1 cut(s) 610
FauNDI CATATG 1 cut(s) 715
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 408
FriOI GRGCYC 1 cut(s) 356
FspBI CTAG 1 cut(s) 828
GlaI GCGC 2 cut(s) 507, 592
GsuI CTGGAG 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 3 cut(s) 289, 297, 624
HapII CCGG 3 cut(s) 240, 283, 677
HgaI GACGC 1 cut(s) 436
HhaI GCGC 2 cut(s) 508, 593
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 4 cut(s) 37, 53, 257, 893
Hin6I GCGC 2 cut(s) 506, 591
HinP1I GCGC 2 cut(s) 506, 591
HinfI GANTC 4 cut(s) 7, 56, 70, 544
HpaII CCGG 3 cut(s) 240, 283, 677
HphI GGTGA 3 cut(s) 573, 691, 830
Hpy166II GTNNAC 4 cut(s) 409, 610, 702, 844
Hpy188I TCNGA 5 cut(s) 92, 368, 858, 882, 918
Hpy188III TCNNGA 5 cut(s) 197, 457, 801, 807, 890
Hpy8I GTNNAC 4 cut(s) 409, 610, 702, 844
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 209, 528, 746
HpyCH4III ACNGT 2 cut(s) 607, 649
HpyCH4IV ACGT 2 cut(s) 375, 698
HpyCH4V TGCA 5 cut(s) 529, 692, 710, 763, 833
HpyF10VI GCNNNNNNNGC 8 cut(s) 156, 258, 328, 396, 468, 665, 769, 778
HpyF3I CTNAG 2 cut(s) 89, 458
HpySE526I ACGT 2 cut(s) 375, 698
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 4 cut(s) 37, 53, 257, 893
HspAI GCGC 2 cut(s) 506, 591
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 223, 803, 882
LguI GCTCTTC 1 cut(s) 732
LmnI GCTCC 1 cut(s) 656
Lsp1109I GCAGC 9 cut(s) 162, 261, 402, 408, 477, 515, 704, 711, 793
MaeI CTAG 1 cut(s) 828
MaeII ACGT 2 cut(s) 375, 698
MaeIII GTNAC 1 cut(s) 484
MalI GATC 3 cut(s) 225, 805, 884
MbiI CCGCTC 1 cut(s) 462
MboI GATC 3 cut(s) 223, 803, 882
MboII GAAGA 3 cut(s) 200, 482, 749
MflI RGATCY 2 cut(s) 803, 882
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 2 cut(s) 796, 859
MlyI GAGTC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 28
MslI CAYNNNNRTG 2 cut(s) 189, 650
MspA1I CMGCKG 2 cut(s) 393, 468
MspI CCGG 3 cut(s) 240, 283, 677
MspR9I CCNGG 5 cut(s) 212, 270, 306, 588, 626
Mva1269I GAATGC 2 cut(s) 765, 829
MvaI CCWGG 5 cut(s) 212, 270, 306, 588, 626
MvnI CGCG 2 cut(s) 292, 593
MwoI GCNNNNNNNGC 8 cut(s) 156, 258, 328, 396, 468, 665, 769, 778
NcoI CCATGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 715
NdeII GATC 3 cut(s) 223, 803, 882
NlaIII CATG 4 cut(s) 37, 53, 257, 893
NlaIV GGNNCC 4 cut(s) 231, 310, 646, 906
PaeR7I CTCGAG 3 cut(s) 263, 731, 807
PagI TCATGA 1 cut(s) 889
PaqCI CACCTGC 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 732
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PctI GAATGC 2 cut(s) 765, 829
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 3 cut(s) 7, 56, 544
PflMI CCANNNNNTGG 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 239
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 2 cut(s) 230, 905
Psp5II RGGWCCY 2 cut(s) 230, 905
Psp6I CCWGG 5 cut(s) 210, 268, 304, 586, 624
PspGI CCWGG 5 cut(s) 210, 268, 304, 586, 624
PspN4I GGNNCC 4 cut(s) 231, 310, 646, 906
PspPI GGNCC 3 cut(s) 230, 674, 905
PspPPI RGGWCCY 2 cut(s) 230, 905
PspXI VCTCGAGB 2 cut(s) 263, 731
PsuI RGATCY 2 cut(s) 803, 882
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 2 cut(s) 189, 650
SapI GCTCTTC 1 cut(s) 732
Sau3AI GATC 3 cut(s) 223, 803, 882
Sau96I GGNCC 3 cut(s) 230, 674, 905
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 5 cut(s) 212, 270, 306, 588, 626
SduI GDGCHC 1 cut(s) 356
Sfr274I CTCGAG 3 cut(s) 263, 731, 807
SinI GGWCC 3 cut(s) 230, 674, 905
SlaI CTCGAG 3 cut(s) 263, 731, 807
SmiMI CAYNNNNRTG 2 cut(s) 189, 650
SmlI CTYRAG 3 cut(s) 263, 731, 807
SmoI CTYRAG 3 cut(s) 263, 731, 807
Sse9I AATT 2 cut(s) 796, 859
SspMI CTAG 1 cut(s) 828
StyD4I CCNGG 5 cut(s) 210, 268, 304, 586, 624
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 607, 649
TaiI ACGT 2 cut(s) 378, 701
TaqI TCGA 6 cut(s) 10, 68, 111, 264, 732, 808
TasI AATT 2 cut(s) 796, 859
TatI WGTACW 1 cut(s) 609
TauI GCSGC 7 cut(s) 249, 292, 300, 396, 465, 471, 624
TfiI GAWTC 3 cut(s) 7, 56, 544
TseI GCWGC 9 cut(s) 150, 249, 390, 396, 465, 503, 692, 724, 781
TspDTI ATGAA 1 cut(s) 732
TspGWI ACGGA 1 cut(s) 546
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 3 cut(s) 230, 674, 905
XapI RAATTY 2 cut(s) 796, 859
XhoI CTCGAG 3 cut(s) 263, 731, 807
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 28
XspI CTAG 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.