FvH4_7g22970

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012533
Physical Location & Seq
Reverse (-)
18027499 .. 18028461
963 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22970.t1

Sequence Viewer

Length: 963 bp
ATGGCGAATCGTTGGTGGGCTGGAAATGTAGCGATGGGAGTGGACTCTCTCACCTCAACGCCGCCGTCTCTTCATCTCAGAAACTCCGAAGCTGAAGACCATAACAACATCAACAACAACACGCCCGCAAACAGCAGCAACAGCGACCCAAACACAACTCCACCTAAGCAGGAAGACGACCAGGACAGCCGCGACAACAACGATCGAGAACTTGACAACCAAGAACCTAGCTCCGGCGGCCACGACAGCCTCGAGCCTGGCTCCAGCAATCGCCGCCCTAGAGGCCGGCCACCGGGCTCAAAGAACAAGCCGAAACCGCCGATAATCATCACCAAAGAGTCTCCCAACGCTCTCCGGAGCCACGTCTTGGAAATCAGCAGCGGCAGCGACATCGTTGACAGTATTGCCACCTTTGCGCAGCGCAGGCACAGAGGAGTCTCCGTCTTGAGCGGCAGCGGCATTGTTTCTAACGTCACTCTCCGTCAGCCGGCTGCGCCGAGTGGAGTCATAACGCTCCATGGAAGGTTCGAGATTCTGTCCTTAAACGGTGCGTTTCTGCCTGCCCCTTCGCCGCCCGGGGCAAGCGGCCTGACCGTGTACTTGGGCGGCGGGCAGGGGCAGGTGGTTGGTGGGACTGTTGTTGGACCACTGGTAGCTTCCGGGCCGGTGATGATCATTGCGGCCACATTTACTAATGCAACTTATGAGAGACTGCCGCTTGAGGAGGAGAGCAATGAAGGGATGCAATTGCAACAGCAACAACAGCAGCAGCAGCAGCAGCAATCCGGTGTGAACTCGGCAGGGACTGGAGGGAATTCGGGGTCTCAGAGTTTGAGTGATCAACAGCAGCAGCAACAACAAGTGCCCATTTACGCTTTGCCTCCTACTTTGCTTCCAAATGGTCAGATGCCGCCTGATGTGTACTGGGGTCCTCCACCGCCTAGACCTCCGCCATCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

321

Amino Acids

33.91

Weight (kDa)

5.36

Isoelectric Point (pI)

68.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 119 - 232 1.1e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55560
fragaria_vesca FvH4_7g22970
malus_domestica MD01G1138500.v1.1 MD07G1202700.v1.1
prunus_persica Prupe.2G239000_v2.0.a1
pyrus_communis pycom01g15920 pycom07g18970
rosa_chinensis RchiOBHm_Chr1g0368171
rosa_laevigata RLG00000027233
rosa_multiflora Rmu_sc0006814.1_g000001 Rmu_sc0020763.1_g000001 Rmu_sc0035888.1_g000001
rosa_roxburghii Rroxscaffold_4G00288830
rosa_rugosa Rorug01G0339100
rosa_samantha Rh1AG346600 Rh1BG309200 Rh1CG324700 Rh1DG341100
rosa_wichuraiana Rw1G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
Acc16I TGCGCA 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 367
AccBSI CCGCTC 1 cut(s) 450
AccII CGCG 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 354
AcoI YGGCCR 3 cut(s) 238, 287, 681
AcsI RAATTY 1 cut(s) 814
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 599, 923
AfiI CCNNNNNNNGG 4 cut(s) 233, 292, 367, 487
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 2 cut(s) 180, 256
AluBI AGCT 3 cut(s) 92, 231, 656
AluI AGCT 3 cut(s) 92, 231, 656
Alw26I GTCTC 5 cut(s) 72, 345, 442, 703, 828
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 2 cut(s) 251, 575
Aor13HI TCCGGA 1 cut(s) 354
AoxI GGCC 6 cut(s) 238, 283, 287, 586, 662, 681
ApoI RAATTY 1 cut(s) 814
AspLEI GCGC 3 cut(s) 418, 423, 496
AspS9I GGNCC 3 cut(s) 644, 662, 929
AsuC2I CCSGG 4 cut(s) 294, 576, 577, 661
AsuHPI GGTGA 3 cut(s) 43, 322, 679
AvaI CYCGRG 2 cut(s) 251, 575
AvaII GGWCC 2 cut(s) 644, 929
BaeGI GKGCMC 1 cut(s) 867
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 2 cut(s) 102, 180
BccI CCATC 2 cut(s) 28, 961
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 2 cut(s) 182, 258
BclI TGATCA 2 cut(s) 672, 838
BcnI CCSGG 4 cut(s) 294, 576, 577, 661
BcoDI GTCTC 5 cut(s) 72, 345, 442, 703, 828
BfaI CTAG 3 cut(s) 228, 279, 942
BfuAI ACCTGC 1 cut(s) 610
BglI GCCNNNNNGGC 1 cut(s) 282
Bme1390I CCNGG 6 cut(s) 182, 258, 294, 576, 577, 661
Bme18I GGWCC 2 cut(s) 644, 929
BmeT110I CYCGRG 2 cut(s) 251, 575
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 3 cut(s) 644, 662, 929
BmiI GGNNCC 3 cut(s) 262, 359, 930
BmrFI CCNGG 6 cut(s) 182, 258, 294, 576, 577, 661
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 2 cut(s) 732, 897
BmuI ACTGGG 1 cut(s) 934
BpiI GAAGAC 2 cut(s) 102, 180
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 2 cut(s) 247, 828
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 466, 740
BpuMI CCSGG 4 cut(s) 294, 576, 577, 661
BsaBI GATNNNNATC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 828
BsaJI CCNNGG 3 cut(s) 517, 575, 576
BsaWI WCCGGW 2 cut(s) 354, 785
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 292, 367, 487
Bse118I RCCGGY 3 cut(s) 285, 487, 664
Bse1I ACTGG 3 cut(s) 654, 811, 929
Bse3DI GCAATG 2 cut(s) 675, 739
Bse8I GATNNNNATC 1 cut(s) 326
BseAI TCCGGA 1 cut(s) 354
BseBI CCWGG 2 cut(s) 182, 258
BseDI CCNNGG 3 cut(s) 517, 575, 576
BseGI GGATG 1 cut(s) 747
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 4 cut(s) 233, 292, 367, 487
BseMI GCAATG 2 cut(s) 675, 739
BseMII CTCAG 2 cut(s) 91, 839
BseNI ACTGG 3 cut(s) 654, 811, 929
BseRI GAGGAG 3 cut(s) 447, 737, 740
BseSI GKGCMC 1 cut(s) 867
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 6 cut(s) 240, 285, 289, 588, 664, 683
BsiEI CGRYCG 1 cut(s) 205
BsiHKCI CYCGRG 2 cut(s) 251, 575
BsiSI CCGG 9 cut(s) 234, 286, 293, 355, 488, 576, 660, 665, 786
BslFI GGGAC 2 cut(s) 646, 817
BslI CCNNNNNNNGG 4 cut(s) 233, 292, 367, 487
BsmAI GTCTC 5 cut(s) 72, 345, 442, 703, 828
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 2 cut(s) 646, 817
BsnI GGCC 6 cut(s) 240, 285, 289, 588, 664, 683
Bso31I GGTCTC 1 cut(s) 828
BsoBI CYCGRG 2 cut(s) 251, 575
Bsp1286I GDGCHC 2 cut(s) 299, 867
Bsp13I TCCGGA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 202, 672, 838
Bsp19I CCATGG 1 cut(s) 517
BspANI GGCC 6 cut(s) 240, 285, 289, 588, 664, 683
BspCNI CTCAG 2 cut(s) 90, 838
BspEI TCCGGA 1 cut(s) 354
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 262, 359, 930
BspMI ACCTGC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 828
BsrBI CCGCTC 1 cut(s) 450
BsrDI GCAATG 2 cut(s) 675, 739
BsrFI RCCGGY 3 cut(s) 285, 487, 664
BsrI ACTGG 3 cut(s) 654, 811, 929
BssAI RCCGGY 3 cut(s) 285, 487, 664
BssECI CCNNGG 3 cut(s) 517, 575, 576
BssMI GATC 3 cut(s) 202, 672, 838
BssT1I CCWWGG 1 cut(s) 517
Bst2UI CCWGG 2 cut(s) 182, 258
Bst4CI ACNGT 4 cut(s) 401, 548, 595, 637
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 7 cut(s) 126, 287, 425, 489, 561, 583, 611
BstDEI CTNAG 3 cut(s) 77, 165, 825
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 1 cut(s) 747
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 3 cut(s) 418, 423, 496
BstKTI GATC 3 cut(s) 205, 675, 841
BstMAI GTCTC 5 cut(s) 72, 345, 442, 703, 828
BstMBI GATC 3 cut(s) 202, 672, 838
BstMCI CGRYCG 1 cut(s) 205
BstNI CCWGG 2 cut(s) 182, 258
BstSCI CCNGG 6 cut(s) 180, 256, 292, 574, 575, 659
BstSLI GKGCMC 1 cut(s) 867
BstUI CGCG 1 cut(s) 192
BstV2I GAAGAC 2 cut(s) 102, 180
BsuRI GGCC 6 cut(s) 240, 285, 289, 588, 664, 683
BtgI CCRYGG 1 cut(s) 517
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 747
BtsIMutI CAGTG 1 cut(s) 647
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 7 cut(s) 126, 287, 425, 489, 561, 583, 611
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 3 cut(s) 418, 423, 496
Cfr10I RCCGGY 3 cut(s) 285, 487, 664
Cfr13I GGNCC 3 cut(s) 644, 662, 929
Cfr9I CCCGGG 1 cut(s) 575
Csp6I GTAC 2 cut(s) 598, 922
CviAII CATG 1 cut(s) 518
CviQI GTAC 2 cut(s) 598, 922
DdeI CTNAG 3 cut(s) 77, 165, 825
DpnI GATC 3 cut(s) 204, 674, 840
DpnII GATC 3 cut(s) 202, 672, 838
EaeI YGGCCR 3 cut(s) 238, 287, 681
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 939
Eco130I CCWWGG 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 828
Eco47I GGWCC 2 cut(s) 644, 929
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 2 cut(s) 251, 575
EcoO109I RGGNCCY 1 cut(s) 929
EcoRI GAATTC 1 cut(s) 814
EcoRII CCWGG 2 cut(s) 180, 256
EcoT14I CCWWGG 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 517
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 1 cut(s) 521
FaiI YATR 4 cut(s) 102, 509, 519, 705
FaqI GGGAC 2 cut(s) 646, 817
FatI CATG 1 cut(s) 517
FauI CCCGC 2 cut(s) 133, 602
FbaI TGATCA 2 cut(s) 672, 838
FokI GGATG 1 cut(s) 754
FriOI GRGCYC 1 cut(s) 299
FseI GGCCGGCC 1 cut(s) 289
FspBI CTAG 3 cut(s) 228, 279, 942
FspI TGCGCA 1 cut(s) 417
GlaI GCGC 3 cut(s) 417, 422, 495
GsuI CTGGAG 2 cut(s) 247, 828
HaeIII GGCC 6 cut(s) 240, 285, 289, 588, 664, 683
HapII CCGG 9 cut(s) 234, 286, 293, 355, 488, 576, 660, 665, 786
HhaI GCGC 3 cut(s) 418, 423, 496
Hin1II CATG 1 cut(s) 521
Hin6I GCGC 3 cut(s) 416, 421, 494
HinP1I GCGC 3 cut(s) 416, 421, 494
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 6 cut(s) 7, 44, 338, 435, 504, 532
HpaII CCGG 9 cut(s) 234, 286, 293, 355, 488, 576, 660, 665, 786
HphI GGTGA 3 cut(s) 43, 322, 679
Hpy166II GTNNAC 5 cut(s) 43, 397, 598, 793, 922
Hpy188I TCNGA 4 cut(s) 80, 88, 828, 906
Hpy188III TCNNGA 4 cut(s) 206, 355, 445, 529
Hpy8I GTNNAC 5 cut(s) 43, 397, 598, 793, 922
HpyAV CCTTC 3 cut(s) 516, 576, 731
HpyCH4III ACNGT 4 cut(s) 401, 548, 595, 637
HpyCH4IV ACGT 2 cut(s) 363, 471
HpyCH4V TGCA 3 cut(s) 698, 745, 751
HpyF3I CTNAG 3 cut(s) 77, 165, 825
HpySE526I ACGT 2 cut(s) 363, 471
Hsp92II CATG 1 cut(s) 521
HspAI GCGC 3 cut(s) 416, 421, 494
Kpn2I TCCGGA 1 cut(s) 354
KroI GCCGGC 2 cut(s) 285, 487
KroNI GCCGGC 2 cut(s) 287, 489
Ksp22I TGATCA 2 cut(s) 672, 838
Kzo9I GATC 3 cut(s) 202, 672, 838
LmnI GCTCC 4 cut(s) 236, 266, 357, 519
LweI GCATC 2 cut(s) 732, 897
MaeI CTAG 3 cut(s) 228, 279, 942
MaeII ACGT 2 cut(s) 363, 471
MaeIII GTNAC 1 cut(s) 472
MalI GATC 3 cut(s) 204, 674, 840
MbiI CCGCTC 1 cut(s) 450
MboI GATC 3 cut(s) 202, 672, 838
MboII GAAGA 3 cut(s) 62, 107, 185
MfeI CAATTG 1 cut(s) 746
MhlI GDGCHC 2 cut(s) 299, 867
MluCI AATT 2 cut(s) 746, 814
MlyI GAGTC 4 cut(s) 38, 347, 444, 513
MmeI TCCRAC 1 cut(s) 622
MroI TCCGGA 1 cut(s) 354
MroNI GCCGGC 2 cut(s) 285, 487
MseI TTAA 1 cut(s) 542
MspA1I CMGCKG 2 cut(s) 381, 456
MspI CCGG 9 cut(s) 234, 286, 293, 355, 488, 576, 660, 665, 786
MspR9I CCNGG 6 cut(s) 182, 258, 294, 576, 577, 661
MteI GCGCNGCGC 1 cut(s) 419
MunI CAATTG 1 cut(s) 746
MvaI CCWGG 2 cut(s) 182, 258
MvnI CGCG 1 cut(s) 192
NaeI GCCGGC 2 cut(s) 287, 489
NciI CCSGG 4 cut(s) 294, 576, 577, 661
NcoI CCATGG 1 cut(s) 517
NdeII GATC 3 cut(s) 202, 672, 838
NgoMIV GCCGGC 2 cut(s) 285, 487
NlaIII CATG 1 cut(s) 521
NlaIV GGNNCC 3 cut(s) 262, 359, 930
NmeAIII GCCGAG 2 cut(s) 522, 776
NmuCI GTSAC 1 cut(s) 472
NsbI TGCGCA 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdiI GCCGGC 2 cut(s) 287, 489
PfeI GAWTC 2 cut(s) 7, 532
PflMI CCANNNNNTGG 1 cut(s) 367
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 4 cut(s) 38, 346, 443, 512
PpsI GAGTC 4 cut(s) 38, 346, 443, 512
PpuMI RGGWCCY 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 929
Psp6I CCWGG 2 cut(s) 180, 256
PspGI CCWGG 2 cut(s) 180, 256
PspN4I GGNNCC 3 cut(s) 262, 359, 930
PspPI GGNCC 3 cut(s) 644, 662, 929
PspPPI RGGWCCY 1 cut(s) 929
PspXI VCTCGAGB 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 806
PvuI CGATCG 1 cut(s) 205
RigI GGCCGGCC 1 cut(s) 289
RsaI GTAC 2 cut(s) 599, 923
RsaNI GTAC 2 cut(s) 598, 922
SaqAI TTAA 1 cut(s) 542
Sau3AI GATC 3 cut(s) 202, 672, 838
Sau96I GGNCC 3 cut(s) 644, 662, 929
SchI GAGTC 4 cut(s) 38, 347, 444, 513
ScrFI CCNGG 6 cut(s) 182, 258, 294, 576, 577, 661
SduI GDGCHC 2 cut(s) 299, 867
SfaNI GCATC 2 cut(s) 732, 897
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 2 cut(s) 644, 929
SlaI CTCGAG 1 cut(s) 251
SmaI CCCGGG 1 cut(s) 577
SmlI CTYRAG 3 cut(s) 251, 445, 719
SmoI CTYRAG 3 cut(s) 251, 445, 719
Sse9I AATT 2 cut(s) 746, 814
SspMI CTAG 3 cut(s) 228, 279, 942
StyD4I CCNGG 6 cut(s) 180, 256, 292, 574, 575, 659
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 4 cut(s) 401, 548, 595, 637
TaiI ACGT 2 cut(s) 366, 474
TaqI TCGA 3 cut(s) 205, 252, 528
TasI AATT 2 cut(s) 746, 814
TatI WGTACW 2 cut(s) 597, 921
TfiI GAWTC 2 cut(s) 7, 532
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 1 cut(s) 472
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 2 cut(s) 62, 750
TspGWI ACGGA 2 cut(s) 430, 470
TspMI CCCGGG 1 cut(s) 575
TspRI CASTG 1 cut(s) 654
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 2 cut(s) 644, 929
XapI RAATTY 1 cut(s) 814
XhoI CTCGAG 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 575
XspI CTAG 3 cut(s) 228, 279, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.