Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015874

Physical Location & Seq

Genomic Coordinates Reverse (-)

21908429 .. 21910738

Gene Structure 2310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTGGGAGACTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGTCGTGCTGTCTTTCAAGCCTATCGTCAAGCACTTGCTAATGCGTCTAAATCTGGTGTTGCGCAGGAAGCAATGCAAAATGGAGTACGTCAAGCAGGGAAAGCCATCACTGAGCAAGAGGCTAGGCAGATTCTTGGTGTAACCGAGAAGACCTCTTGGGAAGAGATATTACAGAAATATGACAAACTGTTTGAGAATAATGCGAAAGCAGGGAGCTTTTACCTTCAATCTAAAGTTCATCGAGCCAAAGAATGTCTAGAAGTTGTGTACAGAAGCCAAGGCAACGGTACACCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010817 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019866 GO:0030150 GO:0031090 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032101 GO:0032102 GO:0032879 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1900424 GO:1900425 GO:1902007 GO:1902009 GO:1902288 GO:1902289 GO:1990542 GO:2000012 GO:2000377 GO:2000378

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

116

Amino Acids

12.68

Weight (kDa)

9.56

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 108	5.3e-22	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59280 AT3G59280
fragaria_vesca	FvH4_4g11640
malus_domestica	MD04G1031200.v1.1
prunus_persica	Prupe.1G182300_v2.0.a1
pyrus_communis	pycom04g02630
rosa_chinensis	RchiOBHm_Chr4g0408781
rosa_laevigata	RLG00000008630
rosa_roxburghii	Rroxscaffold_5G00353140
rosa_rugosa	Rorug04G0087800
rosa_samantha	Rh4BG149200 Rh4CG160000 Rh4DG145100
rosa_wichuraiana	Rw0G011290 Rw4G012460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	3 cut(s)	138, 320, 340
AgsI	TTSAA	2 cut(s)	68, 278
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspLEI	GCGC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbsI	GAAGAC	1 cut(s)	206
BccI	CCATC	2 cut(s)	28, 164
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	3 cut(s)	174, 308, 345
BpiI	GAAGAC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BsaJI	CCNNGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	4
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	240, 338
Bst6I	CTCTTC	1 cut(s)	207
BstAUI	TGTACA	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 152
BstV2I	GAAGAC	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	159
CfoI	GCGC	1 cut(s)	115
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	137, 319, 339
CviJI	RGCY	7 cut(s)	5, 71, 155, 173, 267, 296, 327
CviKI_1	RGCY	7 cut(s)	5, 71, 155, 173, 267, 296, 327
CviQI	GTAC	3 cut(s)	137, 319, 339
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
FaiI	YATR	1 cut(s)	231
FspBI	CTAG	3 cut(s)	174, 308, 345
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	9
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	319, 341
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	319, 341
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	240, 338
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	20, 127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 152
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	139
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	5 cut(s)	27, 90, 101, 132, 246
MaeI	CTAG	3 cut(s)	174, 308, 345
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	211, 224
MluCI	AATT	1 cut(s)	22
MnlI	CCTC	2 cut(s)	163, 214
MseI	TTAA	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	119, 152
NdeII	GATC	1 cut(s)	45
NsbI	TGCGCA	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	5
RsaI	GTAC	3 cut(s)	138, 320, 340
RsaNI	GTAC	3 cut(s)	137, 319, 339
SaqAI	TTAA	1 cut(s)	349
Sau3AI	GATC	1 cut(s)	45
SetI	ASST	5 cut(s)	142, 206, 269, 276, 346
Sse9I	AATT	1 cut(s)	22
SspMI	CTAG	3 cut(s)	174, 308, 345
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	240, 338
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	22
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	22
XbaI	TCTAGA	1 cut(s)	307
XspI	CTAG	3 cut(s)	174, 308, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.