Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015874

Physical Location & Seq

Genomic Coordinates Forward (+)

16032534 .. 16036108

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G182300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTAGATAGGAGACAGAGAGGGCAAAGTATATTTGGCTACAGGAGATCCGAAGCCACACGAAGTTTTTCGCTTCCTATGGGCAAACCCATCAACCAAACATCAATAAAACAACATATGCGAAATTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAATTGGAAACCCTAATTTGTACGGAAAAGAAGACAGACAGAGTGATCGATTTGATACTATTCAGCTATGTATAGTGGCAAGGGCTCTAGTTCAAGCATATCGTCAGGCACTTCAAAATGCCTCAAAATCAGGTGTGGCTCAAGAAACATTACAGAATGCTGTTCGTAGAAGCAGCAAGGTCATGACAGAGCAAGAAGCTAGGCAGATTCTTAATGTCTCAGAGACAACCACTTGGGAGGAAGTTATGAAGAGATATGACACTTTATTCGAAAATAATGCCAAGAACGGGACCTTTTACCTTCAGTCAAAAGTTCACAGGGCCAAGGAATGCTTAGAGGCTGCATATCGAGACAAAGGTCAGGGTACGGGTACCCCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010817 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019866 GO:0030150 GO:0031090 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032101 GO:0032102 GO:0032879 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1900424 GO:1900425 GO:1902007 GO:1902009 GO:1902288 GO:1902289 GO:1990542 GO:2000012 GO:2000377 GO:2000378

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

179

Amino Acids

20.46

Weight (kDa)

7.75

Isoelectric Point (pI)

68.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59280 AT3G59280
fragaria_vesca	FvH4_4g11640
malus_domestica	MD04G1031200.v1.1
prunus_persica	Prupe.1G182300_v2.0.a1
pyrus_communis	pycom04g02630
rosa_chinensis	RchiOBHm_Chr4g0408781
rosa_laevigata	RLG00000008630
rosa_roxburghii	Rroxscaffold_5G00353140
rosa_rugosa	Rorug04G0087800
rosa_samantha	Rh4BG149200 Rh4CG160000 Rh4DG145100
rosa_wichuraiana	Rw0G011290 Rw4G012460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	524
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	2 cut(s)	150, 440
AfaI	GTAC	3 cut(s)	176, 520, 526
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	248, 269
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	2 cut(s)	220, 353
AluI	AGCT	2 cut(s)	220, 353
Alw26I	GTCTC	4 cut(s)	7, 371, 376, 498
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	327, 494
ApoI	RAATTY	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
Asp700I	GAANNNNTTC	1 cut(s)	67
Asp718I	GGTACC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	444, 474
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	339, 481
BccI	CCATC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BcoDI	GTCTC	4 cut(s)	7, 371, 376, 498
BfaI	CTAG	3 cut(s)	242, 354, 531
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	2 cut(s)	328, 495
BlsI	GCNGC	2 cut(s)	329, 496
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	444, 474
BmiI	GGNNCC	2 cut(s)	445, 526
BoxI	GACNNNNGTC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMII	CTCAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	339, 481
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	524
BshVI	ATCGAT	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	4 cut(s)	7, 371, 376, 498
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	2 cut(s)	316, 488
BsnI	GGCC	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	47, 199
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	386
BspDI	ATCGAT	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	445, 526
BspPI	GGATC	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	2 cut(s)	47, 199
BssT1I	CCWWGG	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	373, 487
BstKTI	GATC	2 cut(s)	50, 202
BstMAI	GTCTC	4 cut(s)	7, 371, 376, 498
BstMBI	GATC	2 cut(s)	47, 199
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	339, 481
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	476
BsuTUI	ATCGAT	1 cut(s)	202
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	444, 474
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	175, 519, 525
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	8 cut(s)	39, 56, 220, 239, 293, 353, 476, 494
CviKI_1	RGCY	8 cut(s)	39, 56, 220, 239, 293, 353, 476, 494
CviQI	GTAC	3 cut(s)	175, 519, 525
DdeI	CTNAG	2 cut(s)	373, 487
DpnI	GATC	2 cut(s)	49, 201
DpnII	GATC	2 cut(s)	47, 199
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	444
Eco57I	CTGAAG	2 cut(s)	150, 440
EcoO109I	RGGNCCY	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	1 cut(s)	340
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	1 cut(s)	336
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	328, 495
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	328, 495
FspBI	CTAG	3 cut(s)	242, 354, 531
GluI	GCNGC	2 cut(s)	328, 495
HaeIII	GGCC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	340
HinfI	GANTC	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	3 cut(s)	52, 130, 376
Hpy188III	TCNNGA	3 cut(s)	296, 337, 503
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	1 cut(s)	464
HpyCH4V	TGCA	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	373, 487
Hsp92II	CATG	1 cut(s)	340
KpnI	GGTACC	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	47, 199
LpnPI	CCDG	5 cut(s)	28, 245, 270, 457, 500
Lsp1109I	GCAGC	2 cut(s)	339, 481
MaeI	CTAG	3 cut(s)	242, 354, 531
MalI	GATC	2 cut(s)	49, 201
MboI	GATC	2 cut(s)	47, 199
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	124, 156, 169
MnlI	CCTC	4 cut(s)	14, 286, 385, 484
MroXI	GAANNNNTTC	1 cut(s)	67
MseI	TTAA	1 cut(s)	366
Mva1269I	GAATGC	2 cut(s)	316, 488
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	2 cut(s)	47, 199
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	2 cut(s)	445, 526
NspV	TTCGAA	1 cut(s)	423
PagI	TCATGA	1 cut(s)	336
PctI	GAATGC	2 cut(s)	316, 488
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	329, 496
PpuMI	RGGWCCY	1 cut(s)	444
PshAI	GACNNNNGTC	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	445, 526
PspPI	GGNCC	2 cut(s)	444, 474
PspPPI	RGGWCCY	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	3 cut(s)	176, 520, 526
RsaNI	GTAC	3 cut(s)	175, 519, 525
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	328, 495
Sau3AI	GATC	2 cut(s)	47, 199
Sau96I	GGNCC	2 cut(s)	444, 474
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	222, 289, 336, 355, 449, 456, 514
SfcI	CTRYAG	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	124, 156, 169
SspMI	CTAG	3 cut(s)	242, 354, 531
StyI	CCWWGG	1 cut(s)	477
TaqI	TCGA	3 cut(s)	202, 423, 502
TasI	AATT	3 cut(s)	124, 156, 169
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseI	GCWGC	2 cut(s)	327, 494
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	3 cut(s)	242, 354, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.