Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015874

Physical Location & Seq

Genomic Coordinates Reverse (-)

35075431 .. 35082991

Gene Structure 7561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG160000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGTTCCGGTATACTGGCGAGGGCCGTAGTTCAGGCATATCGTCAAGCACTTGCAAATGCCTCGAAATCTGGTGTTGCCCAAGAAACGCTACAAAATGCTGCTCGTAAAGCAGGCAAAGTCATGACGGAGCAAGAAGCTAGGCAGATTCTTGGTATCTCAGAGGGAACCACTTGGGAGGAAGCCTTGAAGAAATACGACACATTATTTGAAAACAATGCCAAGAACGGGAGCTTTTACCTCCAGTCAAAAGTTCACAGGGCCAAGGAATGTTTAGAAGCTGCCTATAAAGATAAAGGTCAAGGTACCCCTACCCCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010817 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019866 GO:0030150 GO:0031090 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032101 GO:0032102 GO:0032879 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1900424 GO:1900425 GO:1902007 GO:1902009 GO:1902288 GO:1902289 GO:1990542 GO:2000012 GO:2000377 GO:2000378

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

107

Amino Acids

11.61

Weight (kDa)

9.3

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 98	7.5e-18	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59280 AT3G59280
fragaria_vesca	FvH4_4g11640
malus_domestica	MD04G1031200.v1.1
prunus_persica	Prupe.1G182300_v2.0.a1
pyrus_communis	pycom04g02630
rosa_chinensis	RchiOBHm_Chr4g0408781
rosa_laevigata	RLG00000008630
rosa_roxburghii	Rroxscaffold_5G00353140
rosa_rugosa	Rorug04G0087800
rosa_samantha	Rh4BG149200 Rh4CG160000 Rh4DG145100
rosa_wichuraiana	Rw0G011290 Rw4G012460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	190, 212
AluBI	AGCT	3 cut(s)	140, 234, 281
AluI	AGCT	3 cut(s)	140, 234, 281
AoxI	GGCC	2 cut(s)	24, 261
ApeKI	GCWGC	2 cut(s)	101, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp718I	GGTACC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	24, 261
BanI	GGYRCC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	88, 268
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	2 cut(s)	102, 282
BlsI	GCNGC	2 cut(s)	103, 283
BmgT120I	GGNCC	2 cut(s)	24, 261
BmiI	GGNNCC	3 cut(s)	7, 169, 307
BpmI	CTGGAG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	21, 244
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	21, 244
BseXI	GCAGC	2 cut(s)	88, 268
BshFI	GGCC	2 cut(s)	26, 263
BshNI	GGYRCC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	2 cut(s)	26, 263
BspANI	GGCC	2 cut(s)	26, 263
BspCNI	CTCAG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	7, 169, 307
BspT107I	GGYRCC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	21, 244
BssECI	CCNNGG	1 cut(s)	264
BssNAI	GTATAC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	88, 268
BstZ17I	GTATAC	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	26, 263
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	24, 261
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	6 cut(s)	26, 140, 185, 234, 263, 281
CviKI_1	RGCY	6 cut(s)	26, 140, 185, 234, 263, 281
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	14, 40, 125, 288
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	102, 282
Fsp4HI	GCNGC	2 cut(s)	102, 282
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	2 cut(s)	102, 282
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	26, 263
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	9
Hpy166II	GTNNAC	2 cut(s)	14, 256
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	14, 256
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	127
KpnI	GGTACC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	130, 231
LpnPI	CCDG	7 cut(s)	2, 20, 22, 57, 99, 244, 257
Lsp1109I	GCAGC	2 cut(s)	88, 268
MaeI	CTAG	1 cut(s)	141
MboII	GAAGA	1 cut(s)	202
MnlI	CCTC	5 cut(s)	15, 73, 157, 172, 251
MspI	CCGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	3 cut(s)	7, 169, 307
PagI	TCATGA	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	103, 283
PspN4I	GGNNCC	3 cut(s)	7, 169, 307
PspPI	GGNCC	2 cut(s)	24, 261
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SatI	GCNGC	2 cut(s)	102, 282
Sau96I	GGNCC	2 cut(s)	24, 261
SetI	ASST	6 cut(s)	142, 236, 243, 283, 301, 307
SspMI	CTAG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	264
TaqI	TCGA	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	101, 281
TspGWI	ACGGA	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.