Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015874

Physical Location & Seq

Genomic Coordinates Reverse (-)

3481764 .. 3486186

Gene Structure 4423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1031200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTGCAAAGATTCTTGCTAACTTAATTGTGATGGGAACTGGTATAGTGGCAAGGGCTCTAGTTCAAGCATATCGTCAGGCACTTACAAATGCCTCAAAGACTGGTGTTGCCCAAGAAACATTACAGAACGCTGTCCGTAGAAGTAGCAAGGTCATGACAGAGCAGGAAGCTAGGCAGATTCTTAATGTCTCAGAGACGACCACTTGGGAGGAAGTTCTGAAGAGGTACGACACTCTATTTGAAAACAATGCGAAGAACGGGACCTTCTACCTTCAGTCAAAAGTTCACAGGGCGAAGGAATGTTTAGAGGCTGCATATCGAGACAAAGGCCAGAGTACGGGTACCCCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010817 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019866 GO:0030150 GO:0031090 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032101 GO:0032102 GO:0032879 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1900424 GO:1900425 GO:1902007 GO:1902009 GO:1902288 GO:1902289 GO:1990542 GO:2000012 GO:2000377 GO:2000378

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

119

Amino Acids

13.08

Weight (kDa)

9.56

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 110	1.2e-23	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59280 AT3G59280
fragaria_vesca	FvH4_4g11640
malus_domestica	MD04G1031200.v1.1
prunus_persica	Prupe.1G182300_v2.0.a1
pyrus_communis	pycom04g02630
rosa_chinensis	RchiOBHm_Chr4g0408781
rosa_laevigata	RLG00000008630
rosa_roxburghii	Rroxscaffold_5G00353140
rosa_rugosa	Rorug04G0087800
rosa_samantha	Rh4BG149200 Rh4CG160000 Rh4DG145100
rosa_wichuraiana	Rw0G011290 Rw4G012460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	344
AcuI	CTGAAG	2 cut(s)	242, 260
AfaI	GTAC	3 cut(s)	230, 340, 346
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	68, 245
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	3 cut(s)	191, 196, 318
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	5, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp718I	GGTACC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	191, 196, 318
BfaI	CTAG	3 cut(s)	62, 174, 351
BisI	GCNGC	2 cut(s)	6, 315
BlsI	GCNGC	2 cut(s)	7, 316
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	265, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	46, 109
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	46, 109
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	3 cut(s)	191, 196, 318
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	265, 346
BspT107I	GGYRCC	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	46, 109
Bst6I	CTCTTC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	193
BstMAI	GTCTC	3 cut(s)	191, 196, 318
BstV1I	GCAGC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	3 cut(s)	229, 339, 345
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	5 cut(s)	5, 59, 173, 314, 333
CviKI_1	RGCY	5 cut(s)	5, 59, 173, 314, 333
CviQI	GTAC	3 cut(s)	229, 339, 345
DdeI	CTNAG	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	2 cut(s)	242, 260
EcoO109I	RGGNCCY	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	160
FaiI	YATR	4 cut(s)	47, 73, 158, 319
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	6, 315
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	6, 315
FspBI	CTAG	3 cut(s)	62, 174, 351
GluI	GCNGC	2 cut(s)	6, 315
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	2 cut(s)	13, 181
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	196, 222
Hpy188III	TCNNGA	2 cut(s)	157, 323
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	277, 284, 292
HpyCH4V	TGCA	2 cut(s)	8, 317
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	160
KpnI	GGTACC	1 cut(s)	348
LpnPI	CCDG	6 cut(s)	27, 65, 90, 152, 277, 347
Lsp1109I	GCAGC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	62, 174, 351
MboII	GAAGA	2 cut(s)	235, 268
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	4 cut(s)	106, 205, 219, 304
MseI	TTAA	2 cut(s)	26, 186
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	265, 346
PagI	TCATGA	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	13, 181
PkrI	GCNGC	2 cut(s)	7, 316
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	265, 346
PspPI	GGNCC	1 cut(s)	264
PspPPI	RGGWCCY	1 cut(s)	264
RsaI	GTAC	3 cut(s)	230, 340, 346
RsaNI	GTAC	3 cut(s)	229, 339, 345
SaqAI	TTAA	2 cut(s)	26, 186
SatI	GCNGC	2 cut(s)	6, 315
Sau96I	GGNCC	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	5 cut(s)	156, 175, 230, 269, 276
SinI	GGWCC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	27
SspMI	CTAG	3 cut(s)	62, 174, 351
TaqI	TCGA	1 cut(s)	322
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	13, 181
Tru1I	TTAA	2 cut(s)	26, 186
Tru9I	TTAA	2 cut(s)	26, 186
TseI	GCWGC	2 cut(s)	5, 314
TspGWI	ACGGA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	264
XspI	CTAG	3 cut(s)	62, 174, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.