Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016017

Physical Location & Seq

Genomic Coordinates Reverse (-)

23223030 .. 23224326

Gene Structure 1297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCGTCGGGGTGGGGGATAACGGGAAACAAAGGGAGGTGTTACGATTTCTGGATGGATTTCAGCGAATGTATGTCTCATTGCAGAGAGCCCAAAGACTGTACTCTTCTTCGTGAAGACTACCTCGAGTGTCTTCACCATTCCAAAGAGTTCCAACGAAGAAACAGGATATACAAAGAAGAACAACGTAAACTAAGAGCTGCATCAAGGAAAGGCGAAGAAACCGGGGATGGGACTCATACTCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0010257 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032981 GO:0032991 GO:0033108 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0065003 GO:0070469 GO:0071840 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Ndufs5

Protein Analysis

83

Amino Acids

9.89

Weight (kDa)

7.7

Isoelectric Point (pI)

66.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndufs5	PF10200	11 - 65	8.3e-06	NADH:ubiquinone oxidoreductase, NDUFS5-15kDa

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47690 AT2G47690 AT2G47690 AT3G62790
fragaria_vesca	FvH4_2g25680
malus_domestica	MD02G1095800.v1.1 MD03G1287600.v1.1
prunus_persica	Prupe.8G260800_v2.0.a1
pyrus_communis	pycom03g22770 pycom11g27130
rosa_chinensis	RchiOBHm_Chr6g0293941
rosa_roxburghii	Rroxscaffold_7G00173820
rosa_samantha	Rh6BG359400 Rh6CG366700 Rh6DG353000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	2 cut(s)	123, 125
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	49, 224
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	250
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	123, 125
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	60, 235
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	60, 235
BstMAI	GTCTC	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	2 cut(s)	123, 125
BtsCI	GGATG	2 cut(s)	60, 235
Csp6I	GTAC	1 cut(s)	102
CviJI	RGCY	2 cut(s)	91, 200
CviKI_1	RGCY	2 cut(s)	91, 200
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	93
FaiI	YATR	3 cut(s)	74, 172, 240
FaqI	GGGAC	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	67, 242
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	250
GluI	GCNGC	1 cut(s)	201
HapII	CCGG	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	52, 113
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	84, 203
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	187
Hsp92I	GRCGYC	1 cut(s)	5
LpnPI	CCDG	3 cut(s)	37, 151, 238
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	250
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	41
MboII	GAAGA	7 cut(s)	98, 101, 125, 128, 171, 191, 230
MhlI	GDGCHC	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	30, 134
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	226
NciI	CCSGG	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	125
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SatI	GCNGC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	4 cut(s)	41, 126, 190, 202
SfaNI	GCATC	1 cut(s)	212
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SspMI	CTAG	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	126
TatI	WGTACW	1 cut(s)	101
TseI	GCWGC	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.